View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2608_high_1 (Length: 633)
Name: NF2608_high_1
Description: NF2608
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2608_high_1 |
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Alignment Details
Target: chr1 (Bit Score: 365; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 365; E-Value: 0
Query Start/End: Original strand, 203 - 620
Target Start/End: Complemental strand, 5233902 - 5233484
Alignment:
| Q |
203 |
gtgattttatagtcggattttgtcccagagatgttgagcaatgtaaactccattaacaatctctcgcatttcctctctttctccctttgaagtttcttcc |
302 |
Q |
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| T |
5233902 |
gtgattttattgtcggattttgtcccagagatgttgagcaatgtaaactccgttaacaatctctcgcatttcctctctttctccctttgaagtttcttcc |
5233803 |
T |
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| Q |
303 |
attttttcttgcattatcgattatgattttactcaattgtttctgtgagcttttgcaattgtgt--tcattgannnnnnnnncattcattgaatcttgat |
400 |
Q |
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| T |
5233802 |
attttttcttgcattatcgattatgattttactcaattgtttctgtgagcttttgcaattgtgtgttcattgatttttttt-cattcattgaatcttgat |
5233704 |
T |
|
| Q |
401 |
taacaaagtcacaacatttatgtaagatatgttgattgtgatgtaataagacaaattttcaaaagccatttgcaagcaactttcatccctctcaatttgt |
500 |
Q |
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| T |
5233703 |
taacaaagtcacaacatttatgtaagatttgttgattgtgatgtaataagacaaattttcaaaagccatttgcaagcaactttcatccctctcaatttgt |
5233604 |
T |
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| Q |
501 |
tctttacatgattccaatgtaaagagaaacaaatttatttatggcaaaatggagcaataaatagtgctcaatcttctcagttacaagctctataattcat |
600 |
Q |
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| T |
5233603 |
tctttacatgattccaatgtaaagagaaacaaatttatttatggcaaaatggagcaataaatagtgctcaatcttctcagttacaagctctataattcat |
5233504 |
T |
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| Q |
601 |
ggaacaatattcaccaaaat |
620 |
Q |
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| T |
5233503 |
ggaacaatattcaccaaaat |
5233484 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 175; E-Value: 7e-94
Query Start/End: Original strand, 1 - 202
Target Start/End: Complemental strand, 5234083 - 5233879
Alignment:
| Q |
1 |
catagggtagtggctataagtatatataaagccgtaggactaacaatcatgagaacattttgtacatgagataaaagcattggagaagtaaagaataagg |
100 |
Q |
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| T |
5234083 |
catagggtagtggctataagtatatataaagccgtaggactaacaatcatgagaacattttgtacatgagataaaagcattggagaagtaaagaataagg |
5233984 |
T |
|
| Q |
101 |
gaaacggccgtgagagaacttttatgatttcatagttgaatcatacatgaaatttaaggtgtaactctcatat---tcatagtgattttattgtcggatt |
197 |
Q |
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| T |
5233983 |
gaaactgttgtgagagaacttttatgatttcatagttgaatcatacttgaaatttaaggtgtaactctcatattcatcatagtgattttattgtcggatt |
5233884 |
T |
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| Q |
198 |
ttgtc |
202 |
Q |
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| T |
5233883 |
ttgtc |
5233879 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 474 - 540
Target Start/End: Complemental strand, 17129903 - 17129837
Alignment:
| Q |
474 |
aagcaactttcatccctctcaatttgttctttacatgattccaatgtaaagagaaacaaatttattt |
540 |
Q |
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|||||||||| ||| || |||||||||||||||||| | ||| ||||||| | |||||||||||||| |
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| T |
17129903 |
aagcaacttttatcactttcaatttgttctttacataactcctatgtaaaaacaaacaaatttattt |
17129837 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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