View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2608_high_13 (Length: 251)

Name: NF2608_high_13
Description: NF2608
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2608_high_13
NF2608_high_13
[»] chr5 (14 HSPs)
chr5 (47-240)||(37411727-37411920)
chr5 (63-211)||(37698368-37698516)
chr5 (63-211)||(37534675-37534823)
chr5 (63-224)||(37391378-37391539)
chr5 (62-211)||(37641456-37641605)
chr5 (70-211)||(37595905-37596049)
chr5 (63-211)||(37437276-37437424)
chr5 (74-206)||(37704248-37704380)
chr5 (63-211)||(37713199-37713347)
chr5 (49-209)||(37430334-37430494)
chr5 (99-206)||(37399276-37399383)
chr5 (52-211)||(37441519-37441677)
chr5 (99-211)||(37380796-37380908)
chr5 (117-211)||(37825488-37825582)
[»] chr3 (1 HSPs)
chr3 (63-211)||(14554634-14554779)
[»] chr4 (2 HSPs)
chr4 (70-224)||(24216181-24216335)
chr4 (63-211)||(16841316-16841464)


Alignment Details
Target: chr5 (Bit Score: 182; Significance: 2e-98; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 47 - 240
Target Start/End: Original strand, 37411727 - 37411920
Alignment:
Q  47 tatcaagaagagagtttaagttgctctaaatggggtcctgttttgttctattgtcctattttacctttcacttgttcttgatgctgctgtttactcattt 146  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  37411727 tatcaagaagagagtttaagttgctctaaatggggtcctgttttgttctattgtcctattttacctttcacttgttcttgttgctgctgtttactcattt 37411826  T
Q  147 tacttcctacaccttctcattatgcaactatcatgacagctttgccttgttacaattcaagaacttacttcttgtcaatgtcacttcatctcag 240  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||    
T  37411827 tacttcctacaccttctcattatgcaactatcatgacagctttgccttgttacaattcaagaacttacttcttgtcaatggcatttcatctcag 37411920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 63 - 211
Target Start/End: Complemental strand, 37698516 - 37698368
Alignment:
Q  63 taagttgctctaaatggggtcctgttttgttctattgtcctattttacctttcacttgttcttgatgctgctgtttactcattttacttcctacaccttc 162  Q
    ||||||||||||||||||||||| |||| |||||||| | |||||| |||||||||| |||||| || || || ||||||||||||||||||||||  ||    
T  37698516 taagttgctctaaatggggtccttttttattctattgccttattttgcctttcactttttcttgttgttgttgcttactcattttacttcctacacactc 37698417  T
Q  163 tcattatgcaactatcatgacagctttgccttgttacaattcaagaact 211  Q
    |||||||||||| |||||||||| | |||||||||||||||||| ||||    
T  37698416 tcattatgcaaccatcatgacagttctgccttgttacaattcaaaaact 37698368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 63 - 211
Target Start/End: Complemental strand, 37534823 - 37534675
Alignment:
Q  63 taagttgctctaaatggggtcctgttttgttctattgtcctattttacctttcacttgttcttgatgctgctgtttactcattttacttcctacaccttc 162  Q
    |||||| ||||||||||| |||| |||| ||| |||| | ||||||||||||||||| |||||| || || || |||||||||||||||||||||| |||    
T  37534823 taagtttctctaaatgggatccttttttattccattgccttattttacctttcactttttcttgttgttgttgattactcattttacttcctacactttc 37534724  T
Q  163 tcattatgcaactatcatgacagctttgccttgttacaattcaagaact 211  Q
    ||| | |||||| | ||||||| || |||||||||||||||||| ||||    
T  37534723 tcactgtgcaacaaacatgacaactctgccttgttacaattcaaaaact 37534675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 63 - 224
Target Start/End: Original strand, 37391378 - 37391539
Alignment:
Q  63 taagttgctctaaatggggtcctgttttgttctattgtcctattttacctttcacttgttcttgatgctgctgtttactcattttacttcctacaccttc 162  Q
    |||||||||||||||||||||||  ||| || ||||| | ||||||||||||||||||||| || || || || ||||||||||||||||||| ||  ||    
T  37391378 taagttgctctaaatggggtccttgtttattttattgccttattttacctttcacttgttcatgttgttgttgcttactcattttacttcctatactctc 37391477  T
Q  163 tcattatgcaactatcatgacagctttgccttgttacaattcaagaacttacttcttgtcaa 224  Q
    ||||| ||||||  |||||| |||| ||||||| |||||||||| |||| | || |||||||    
T  37391478 tcattgtgcaaccttcatgatagctctgccttgctacaattcaaaaactcattttttgtcaa 37391539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 62 - 211
Target Start/End: Complemental strand, 37641605 - 37641456
Alignment:
Q  62 ttaagttgctctaaatggggtcctgttttgttctattgtcctattttacctttcacttgttcttgatgctgctgtttactcattttacttcctacacctt 161  Q
    ||||||| ||||||||||| |||| |||| ||| |||| | ||||||||||||||||| || ||| || || || |||||||||||||||||||||| ||    
T  37641605 ttaagtttctctaaatgggatccttttttattccattgccttattttacctttcacttcttgttgttgttgttgattactcattttacttcctacacttt 37641506  T
Q  162 ctcattatgcaactatcatgacagctttgccttgttacaattcaagaact 211  Q
    |||| | |||||| | ||||||| || |||||||||||||||||| ||||    
T  37641505 ctcactgtgcaaccaacatgacacctctgccttgttacaattcaaaaact 37641456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 70 - 211
Target Start/End: Complemental strand, 37596049 - 37595905
Alignment:
Q  70 ctctaaatggggtcctgttttgttctattgtcctattttacctttcacttgttcttgatgctg---ctgtttactcattttacttcctacaccttctcat 166  Q
    ||||||||||| |||| |||| ||| |||| | ||||||||||||||||| |||||| || ||   ||| |||||||||||||||||||||| |||||||    
T  37596049 ctctaaatgggatccttttttattccattgccttattttacctttcactttttcttgttgttgttgctgcttactcattttacttcctacactttctcat 37595950  T
Q  167 tatgcaactatcatgacagctttgccttgttacaattcaagaact 211  Q
    | |||||| | ||||||| || |||||||||||||||||| ||||    
T  37595949 tgtgcaacaaacatgacaactctgccttgttacaattcaaaaact 37595905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 63 - 211
Target Start/End: Complemental strand, 37437424 - 37437276
Alignment:
Q  63 taagttgctctaaatggggtcctgttttgttctattgtcctattttacctttcacttgttcttgatgctgctgtttactcattttacttcctacaccttc 162  Q
    ||||||||||||||||||||||| |||| |||| ||| | | |||| || |||||||||||| | || || || ||||||| |||||| || |||| |||    
T  37437424 taagttgctctaaatggggtccttttttattcttttgccttgttttgcccttcacttgttctcgttgttgttgcttactcactttactacccacactttc 37437325  T
Q  163 tcattatgcaactatcatgacagctttgccttgttacaattcaagaact 211  Q
    |||||||||||| ||||||||| || |||||| ||||||||||| ||||    
T  37437324 tcattatgcaaccatcatgacacctctgccttattacaattcaaaaact 37437276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 74 - 206
Target Start/End: Complemental strand, 37704380 - 37704248
Alignment:
Q  74 aaatggggtcctgttttgttctattgtcctattttacctttcacttgttcttgatgctgctgtttactcattttacttcctacaccttctcattatgcaa 173  Q
    ||||| |||||| |||| |||||||| | |||||||| ||||||||||||||| |  ||||| |||||||||||||||||||||| |||||||| ||||     
T  37704380 aaatgcggtccttttttattctattgccttattttacttttcacttgttcttgttattgctgcttactcattttacttcctacactttctcattgtgcag 37704281  T
Q  174 ctatcatgacagctttgccttgttacaattcaa 206  Q
    | | ||||| ||||  |||||||||||||||||    
T  37704280 ccaacatgatagctccgccttgttacaattcaa 37704248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 63 - 211
Target Start/End: Complemental strand, 37713347 - 37713199
Alignment:
Q  63 taagttgctctaaatggggtcctgttttgttctattgtcctattttacctttcacttgttcttgatgctgctgtttactcattttacttcctacaccttc 162  Q
    |||||| ||||||||||| |||| |||| ||| |||| | ||||||||||||||||| |||| | || || || ||||||||||||||||| |||| |||    
T  37713347 taagtttctctaaatgggatccttttttattccattgccttattttacctttcacttcttctcgttgttgttgcttactcattttacttcccacactttc 37713248  T
Q  163 tcattatgcaactatcatgacagctttgccttgttacaattcaagaact 211  Q
    ||| | |||||| | ||||||| || |||||||||||||||||| ||||    
T  37713247 tcactgtgcaacaaacatgacaactctgccttgttacaattcaaaaact 37713199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 49 - 209
Target Start/End: Complemental strand, 37430494 - 37430334
Alignment:
Q  49 tcaagaagagagtttaagttgctctaaatggggtcctgttttgttctattgtcctattttacctttcacttgttcttgatgctgctgtttactcatttta 148  Q
    ||||||||||||| ||  || |||||||||||||||| || | |||||||  | ||| || ||||||||||||||||| || ||||| | |||| |||||    
T  37430494 tcaagaagagagtatagtttcctctaaatggggtccttttgttttctatttccttatcttgcctttcacttgttcttgttgatgctgctaactcttttta 37430395  T
Q  149 cttcctacaccttctcattatgcaactatcatgacagctttgccttgttacaattcaagaa 209  Q
    ||||||| || || ||| | |||||  |||||||||| | |||||||||||||||||||||    
T  37430394 cttcctatacattttcaatgtgcaagcatcatgacagttctgccttgttacaattcaagaa 37430334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 99 - 206
Target Start/End: Original strand, 37399276 - 37399383
Alignment:
Q  99 gtcctattttacctttcacttgttcttgatgctgctgtttactcattttacttcctacaccttctcattatgcaactatcatgacagctttgccttgtta 198  Q
    ||||| |||||  ||||||||||||||| || || || |||||||||||||||| ||||| |||||| |||||||| ||||||||| || ||||||||||    
T  37399276 gtccttttttaaatttcacttgttcttgttgttgttgattactcattttacttcatacactttctcactatgcaaccatcatgacacctctgccttgtta 37399375  T
Q  199 caattcaa 206  Q
    ||||||||    
T  37399376 caattcaa 37399383  T

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Target: chr5; HSP #12
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 52 - 211
Target Start/End: Complemental strand, 37441677 - 37441519
Alignment:
Q  52 agaagagagtttaagttgctctaaatggggtcctgttttgttctattgtcctattttacctttcacttgttcttgatgctgctgtttactcattttactt 151  Q
    |||||| ||| |||||  ||||||||||| |||| |||| || ||||| | ||||||||||||||| |||||||  || ||||| |||||||||||||||    
T  37441677 agaagaaagtgtaagtatctctaaatggg-tccttttttattttattgccttattttacctttcacatgttcttcttgttgctgcttactcattttactt 37441579  T
Q  152 cctacaccttctcattatgcaactatcatgacagctttgccttgttacaattcaagaact 211  Q
    |||| || |||||| | || ||| | ||||||| || |||||||||||||||||| ||||    
T  37441578 cctatactttctcactgtgaaacaaacatgacacctctgccttgttacaattcaaaaact 37441519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 99 - 211
Target Start/End: Original strand, 37380796 - 37380908
Alignment:
Q  99 gtcctattttacctttcacttgttcttgatgctgctgtttactcattttacttcctacaccttctcattatgcaactatcatgacagctttgccttgtta 198  Q
    ||||| |||||||||||||||||||||| || || || ||||||||||||||||| |||| |||||||| |||||| | ||||| |  | ||||||||||    
T  37380796 gtccttttttacctttcacttgttcttgttgttgttgcttactcattttacttcccacactttctcattgtgcaaccaacatgatacatctgccttgtta 37380895  T
Q  199 caattcaagaact 211  Q
    || ||||| ||||    
T  37380896 catttcaaaaact 37380908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 117 - 211
Target Start/End: Complemental strand, 37825582 - 37825488
Alignment:
Q  117 cttgttcttgatgctgctgtttactcattttacttcctacaccttctcattatgcaactatcatgacagctttgccttgttacaattcaagaact 211  Q
    |||||||||| || || || |||||||||||||||||||||| |||||| | |||||| | ||||||| || |||||||||||||||||| ||||    
T  37825582 cttgttcttgttgttgttgattactcattttacttcctacactttctcactgtgcaacaaacatgacaactctgccttgttacaattcaaaaact 37825488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 63 - 211
Target Start/End: Complemental strand, 14554779 - 14554634
Alignment:
Q  63 taagttgctctaaatggggtcctgttttgttctattgtcctattttacctttcacttgttcttgatgctgctgtttactcattttacttcctacaccttc 162  Q
    |||||| ||||||||||| |||| |||| |||||||| | ||||||||||||||||| |||||  || ||||   |||||||||||||||||| || |||    
T  14554779 taagtttctctaaatgggatccttttttattctattgccttattttacctttcactttttcttattgttgct---tactcattttacttcctatactttc 14554683  T
Q  163 tcattatgcaactatcatgacagctttgccttgttacaattcaagaact 211  Q
    ||||| |||||| | ||||||| || |||||||||||||||||| ||||    
T  14554682 tcattgtgcaaccaacatgacacctctgccttgttacaattcaaaaact 14554634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 55; Significance: 1e-22; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 70 - 224
Target Start/End: Original strand, 24216181 - 24216335
Alignment:
Q  70 ctctaaatggggtcctgttttgttctattgtcctattttacctttcacttgttcttgatgctgctgtttactcattttacttcctacaccttctcattat 169  Q
    ||||| ||||| |||| |||| ||||| || |  |||| ||||||||||||||| || || || || |||||||||||||||| ||||| | |||||| |    
T  24216181 ctctatatgggttccttttttattctaatgcctcatttgacctttcacttgttcatgttgttgttgcttactcattttacttcttacacttactcattct 24216280  T
Q  170 gcaactatcatgacagctttgccttgttacaattcaagaacttacttcttgtcaa 224  Q
    ||||| |||||||||| | ||| ||||||||||||||||||| | || |||||||    
T  24216281 gcaaccatcatgacagttctgcattgttacaattcaagaactcatttgttgtcaa 24216335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 63 - 211
Target Start/End: Original strand, 16841316 - 16841464
Alignment:
Q  63 taagttgctctaaatggggtcctgttttgttctattgtcctattttacctttcacttgttcttgatgctgctgtttactcattttacttcctacaccttc 162  Q
    ||||||||||||||||||||||| |||| || | ||| | | |||| || |||||||||||||  |||||||| ||||||| ||||||||  |||| ||     
T  16841316 taagttgctctaaatggggtccttttttattgttttgccttgttttgcccttcacttgttctttgtgctgctgcttactcactttacttcacacactttg 16841415  T
Q  163 tcattatgcaactatcatgacagctttgccttgttacaattcaagaact 211  Q
    ||||| |||||| | |||||||||| ||| |||||||| ||||| ||||    
T  16841416 tcattctgcaaccaacatgacagctctgctttgttacatttcaaaaact 16841464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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