View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2608_high_16 (Length: 237)
Name: NF2608_high_16
Description: NF2608
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2608_high_16 |
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Alignment Details
Target: chr1 (Bit Score: 196; Significance: 1e-107; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 45935702 - 45935482
Alignment:
| Q |
1 |
ctcactgaagcccatagtttagcccacttcaagagtcccctgcatgtttgtgcaatcttgattgcaaaagagaaagnnnnnnntgttataatttcaggga |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| | |
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| T |
45935702 |
ctcactgaagcccatagtttagcccacttcaagagtcccctgcatgtttgtgcaatcttgattgcaaaagagaaagaaaaaaatgttataatttcaggaa |
45935603 |
T |
|
| Q |
101 |
ttaaaatcatatttaaaccacaacttcttttgcagagaccaaaacaaaatgaagcatatttaaagacttaaaaatatatctaagcctctataaaatcttc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45935602 |
ttaaaatcatatttaaaccacaacttcttttgcagagaccaaaacaaaatgaagcatatttaaagacttaaaaatatatctaagcctctataaaatcttc |
45935503 |
T |
|
| Q |
201 |
ttcaatcttcctaatacatat |
221 |
Q |
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||||||||||||||||||||| |
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| T |
45935502 |
ttcaatcttcctaatacatat |
45935482 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 102; Significance: 9e-51; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 1 - 162
Target Start/End: Complemental strand, 15817783 - 15817624
Alignment:
| Q |
1 |
ctcactgaagcccatagtttagcccacttcaagagtcccctgcatgtttgtgcaatcttgattgcaaaagagaaagnnnnnnntgttataatttcaggga |
100 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||| || ||||||||||||||||| |
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| T |
15817783 |
ctcactgaagcccatagtttcgcccacttcaagagtcccctacatgtttgtgcaatcttgattgcaaaagag--agaaaaaaatgttataatttcaggga |
15817686 |
T |
|
| Q |
101 |
ttaaaatcatatttaaaccacaacttcttttgcagagaccaaaacaaaatgaagcatattta |
162 |
Q |
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||||||||||||||||||| ||||| |||||||||||| ||||||||| |||||||||||| |
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| T |
15817685 |
ttaaaatcatatttaaaccgaaactttttttgcagagactaaaacaaaaagaagcatattta |
15817624 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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