View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2608_high_2 (Length: 609)
Name: NF2608_high_2
Description: NF2608
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2608_high_2 |
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Alignment Details
Target: chr2 (Bit Score: 549; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 549; E-Value: 0
Query Start/End: Original strand, 20 - 601
Target Start/End: Original strand, 170812 - 171394
Alignment:
| Q |
20 |
gtattctcagtgaattgactcaacaatttgtttaccaactgtttttctcagtcaatgacattttgtgtctagttcttcacatcaaagccacttccttgtg |
119 |
Q |
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| T |
170812 |
gtattctcagtgaattgactcaacaatttgtttaccaactgtttttctcagtcaatgacattttgtgtctagttcttcacatcaaagccacttccttgtg |
170911 |
T |
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| Q |
120 |
atccatcaactttgccaaagtacccaccaagtaaggagtttgatgccaaacttcgagaagaggaagctagaaggtattccttctttgattcttgttatca |
219 |
Q |
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| T |
170912 |
atccatcaactttgccaaagtacccaccaagtaaggagtttgat-ccaaacttcgagaagaggaagcgagaaggtattccttctttgattcttgttatca |
171010 |
T |
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| Q |
220 |
tcatagattcccatgcgattttgtcatatctgatgcttgcattatcagcagaaatagcaaaaccttgtgctgctagtgtagtagggtatgctttggtgat |
319 |
Q |
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| T |
171011 |
tcatagattcccatgcgattttgtcatatctgatgcttgcattatctgcagaaatagcaaaacgttgtgctgctagtgtagtagggtatgctttggtgat |
171110 |
T |
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| Q |
320 |
aatttgtcttttatattgatatgggaaactaaaatctcaaggggaatggaattatttatt--caaaatttgatgtgcaatcaatgactagaatgatagaa |
417 |
Q |
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| T |
171111 |
aatttgtcttttatattgatatgggaaactaaaatctcaaggggaatggaattatttattttcaaaatttgatgtgcaatcaatgactagaatgatagaa |
171210 |
T |
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| Q |
418 |
aggttctcatttctccctttggcattctcttggagatattgcttttctgaacctataactcacgtaacaagcatcttaatgtttttcccctctatttttt |
517 |
Q |
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| T |
171211 |
aggttctcatttcttcctttggcattctcttggagatattgcttttctgaacctataactcacgtaacaagcatcttaatgtttttcccctctatttttt |
171310 |
T |
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| Q |
518 |
ggccgcctttattttgagatagcacctttattctgttttgtttctataatctttttctttaacaatacttgttatttgtctgtg |
601 |
Q |
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| T |
171311 |
ggccgcctttattttgagatagcacctttattctgttttgtttctataatctttttctttaacaatacttgttatttgtctgtg |
171394 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 90 - 196
Target Start/End: Complemental strand, 33269301 - 33269195
Alignment:
| Q |
90 |
agttcttcacatcaaagccacttccttgtgatccatcaactttgccaaagtacccaccaagtaaggagtttgatgccaaacttcgagaagaggaagctag |
189 |
Q |
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| T |
33269301 |
agttcttctcaacaaagcctctaccttgtgatccttcaagcttgccgaagtatcctccaagcaaagaatttgatgctaaagtacgggatgaagaagctag |
33269202 |
T |
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| Q |
190 |
aaggtat |
196 |
Q |
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| T |
33269201 |
aaggtat |
33269195 |
T |
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