View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2608_high_5 (Length: 475)
Name: NF2608_high_5
Description: NF2608
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2608_high_5 |
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Alignment Details
Target: chr1 (Bit Score: 294; Significance: 1e-165; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 18 - 378
Target Start/End: Complemental strand, 26845479 - 26845127
Alignment:
| Q |
18 |
gtactgttgtcagaaattagaaaggagtattattatggccttacattaattttttatctttacaatttatgctgaaaacttacaagttttgtctttgttt |
117 |
Q |
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| T |
26845479 |
gtacagttgtcagaaattagaaaggagtattattatggccttacattaattttttatctttacaatttgtgctgaaaacttacaagtttt---------t |
26845389 |
T |
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| Q |
118 |
tcttcttgagttgggagttagctaggtgcatggagttatcaaaagacatttttagttattctgttagaattatttcagtcaaactacttctattattttt |
217 |
Q |
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| T |
26845388 |
tcttcttgagttgggagttagctaggtgcatggagttatcaaaagacatttttagttattctgttggaattatttcagtcaaactatttctattattttt |
26845289 |
T |
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| Q |
218 |
cattatatttgaacattttggcctttt-attcgatgagtgttgttcacaacgaatctaacacgaaaccaaatctatcagttcctacggctgctgcaccat |
316 |
Q |
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| T |
26845288 |
cattatatttgaacattttggcctttttatttgacgagtgttgttcacaacgaatctaacacgaaaccaaatctatcagttcctaccgctgctgcaccat |
26845189 |
T |
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| Q |
317 |
aaagtggccgtagaggatccaaatctatcggttaaacattaacatcacaagtgatatgttga |
378 |
Q |
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| T |
26845188 |
aaagtggccgtagaggatccaaatctatcggttaaacattaacatcacaagtgatatgttga |
26845127 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 406 - 466
Target Start/End: Complemental strand, 26845110 - 26845054
Alignment:
| Q |
406 |
aatataatcaaataaatagttggaatgcaaatattttgaaattaaattatgacatattctt |
466 |
Q |
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| T |
26845110 |
aatataatcaaata----gttggaatgcaaatattttgaaattaaattatgacattttctt |
26845054 |
T |
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