View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2608_low_11 (Length: 282)
Name: NF2608_low_11
Description: NF2608
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2608_low_11 |
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Alignment Details
Target: chr4 (Bit Score: 202; Significance: 1e-110; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 1 - 277
Target Start/End: Complemental strand, 33994299 - 33994020
Alignment:
| Q |
1 |
caacatgtataatactacagctttactttcccagctagctcagtcagtacgaccacgatacattttctcaatcaattcgccataataaatgactcttctt |
100 |
Q |
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|||||| ||||||||||| ||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||| || |
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| T |
33994299 |
caacatatataatactactgctttactttcccagctagctcagttagtacgaccataatacattttctcaatcaattcgccataataaatgactctcctg |
33994200 |
T |
|
| Q |
101 |
ttaagatcatcaattgttttgttgacagttaccaaggtcacca---cctcatcattcgagttttggtcgacctggttcacctcagcggcatcagggataa |
197 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||| ||||||||| |||||||||||||||||| ||||||||| | ||||||||||||| |
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| T |
33994199 |
ttaagatcatcaatttttttgttgacagttaccaaggtcaccacctcctcatcatccgagttttggtcgacctgattcacctcatcagcatcagggataa |
33994100 |
T |
|
| Q |
198 |
caactgtatcaatcggcttctttgactccttcttctttttctcaatctgcaaattctttttcttcagagttctctgctcc |
277 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||| ||||||| |||||||| |
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| T |
33994099 |
caactgtatcaatcgacttctttgactccttcttctttttctcaatctgcaaattcttattctccagagttttctgctcc |
33994020 |
T |
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