View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2608_low_19 (Length: 232)

Name: NF2608_low_19
Description: NF2608
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2608_low_19
NF2608_low_19
[»] chr1 (5 HSPs)
chr1 (15-177)||(33053638-33053800)
chr1 (45-173)||(22580863-22580991)
chr1 (34-151)||(34059543-34059660)
chr1 (176-214)||(33053566-33053604)
chr1 (175-208)||(22581026-22581059)
[»] chr4 (5 HSPs)
chr4 (15-177)||(41501539-41501701)
chr4 (82-173)||(19140638-19140729)
chr4 (100-162)||(34294869-34294931)
chr4 (176-214)||(41501467-41501505)
chr4 (175-208)||(19140764-19140797)
[»] chr5 (2 HSPs)
chr5 (15-177)||(29635862-29636024)
chr5 (176-214)||(29636056-29636094)
[»] scaffold0049 (2 HSPs)
scaffold0049 (15-177)||(45530-45692)
scaffold0049 (176-208)||(45724-45756)
[»] chr3 (2 HSPs)
chr3 (34-173)||(678388-678527)
chr3 (175-208)||(678320-678353)
[»] chr7 (1 HSPs)
chr7 (17-173)||(39052249-39052405)
[»] chr8 (1 HSPs)
chr8 (17-147)||(3694802-3694932)


Alignment Details
Target: chr1 (Bit Score: 127; Significance: 1e-65; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 15 - 177
Target Start/End: Complemental strand, 33053800 - 33053638
Alignment:
Q  15 tcaaaaatcagttgcaataaaccaccaccatctccaccttatttcctcgtcctccgcggtcgtgcaaccacaaaggggtattcaaaagccttcaaagaca 114  Q
    ||||||||||||||||||||||||||||| |||||||| ||||||  |||||||||  ||||||||||||||||||||||||||||||||||||||||||    
T  33053800 tcaaaaatcagttgcaataaaccaccaccgtctccaccgtatttcgccgtcctccgacgtcgtgcaaccacaaaggggtattcaaaagccttcaaagaca 33053701  T
Q  115 ttgaatctaccaccaaggtaatcaattaaaaatctttggtttagggttttgaaatttggattt 177  Q
    ||||| | ||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  33053700 ttgaaccaaccaccaaggtaatcaattaaaaatctttggtttaaggttttgaaatttggattt 33053638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 45 - 173
Target Start/End: Original strand, 22580863 - 22580991
Alignment:
Q  45 tctccaccttatttcctcgtcctccgcggtcgtgcaaccacaaaggggtattcaaaagccttcaaagacattgaatctaccaccaaggtaatcaattaaa 144  Q
    ||||| ||||||||| |||||||| || |||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  22580863 tctccgccttatttcgtcgtcctctgccgtcgtgcaaccacaaagggacattcaaaagccttcaaagacattgaatctaccaccaaggtaatcaattata 22580962  T
Q  145 aatctttggtttagggttttgaaatttgg 173  Q
    |||||||||||||||||||| ||||||||    
T  22580963 aatctttggtttagggtttttaaatttgg 22580991  T

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Target: chr1; HSP #3
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 34 - 151
Target Start/End: Original strand, 34059543 - 34059660
Alignment:
Q  34 aaccaccaccatctccaccttatttcctcgtcctccgcggtcgtgcaaccacaaaggggtattcaaaagccttcaaagacattgaatctaccaccaaggt 133  Q
    |||||||||  ||||| ||||||||| |||||||| || ||||||||||||||||| |  ||||||||||||||||||||||||||||||||||||||||    
T  34059543 aaccaccactttctccgccttatttcgtcgtcctctgccgtcgtgcaaccacaaagtgacattcaaaagccttcaaagacattgaatctaccaccaaggt 34059642  T
Q  134 aatcaattaaaaatcttt 151  Q
    ||||||||| ||||||||    
T  34059643 aatcaattataaatcttt 34059660  T

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Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 176 - 214
Target Start/End: Complemental strand, 33053604 - 33053566
Alignment:
Q  176 ttgattgaatatgcaattgagggtcctaatgatgtgtct 214  Q
    ||||||||||||||||||||||||||||||||| |||||    
T  33053604 ttgattgaatatgcaattgagggtcctaatgatatgtct 33053566  T

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Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 175 - 208
Target Start/End: Original strand, 22581026 - 22581059
Alignment:
Q  175 tttgattgaatatgcaattgagggtcctaatgat 208  Q
    ||||||||||||||||||||||||||||||||||    
T  22581026 tttgattgaatatgcaattgagggtcctaatgat 22581059  T

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Target: chr4 (Bit Score: 123; Significance: 2e-63; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 123; E-Value: 2e-63
Query Start/End: Original strand, 15 - 177
Target Start/End: Complemental strand, 41501701 - 41501539
Alignment:
Q  15 tcaaaaatcagttgcaataaaccaccaccatctccaccttatttcctcgtcctccgcggtcgtgcaaccacaaaggggtattcaaaagccttcaaagaca 114  Q
    ||||||||||||||||||||| ||||||| ||||||||||||||   |||||||||| ||||||||||| |||||||  |||||||||| ||||||||||    
T  41501701 tcaaaaatcagttgcaataaatcaccaccgtctccaccttattttgccgtcctccgccgtcgtgcaaccgcaaagggacattcaaaagctttcaaagaca 41501602  T
Q  115 ttgaatctaccaccaaggtaatcaattaaaaatctttggtttagggttttgaaatttggattt 177  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41501601 ttgaatctaccaccaaggtaatcaattaaaaatctttggtttagggttttgaaatttggattt 41501539  T

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Target: chr4; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 82 - 173
Target Start/End: Original strand, 19140638 - 19140729
Alignment:
Q  82 ccacaaaggggtattcaaaagccttcaaagacattgaatctaccaccaaggtaatcaattaaaaatctttggtttagggttttgaaatttgg 173  Q
    ||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||    
T  19140638 ccacaaagggacattcaaaagccttcaaagacattgaatctaccaccaaggtaatcaattataaatctttggtttagggtttttaaatttgg 19140729  T

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Target: chr4; HSP #3
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 100 - 162
Target Start/End: Original strand, 34294869 - 34294931
Alignment:
Q  100 aagccttcaaagacattgaatctaccaccaaggtaatcaattaaaaatctttggtttagggtt 162  Q
    |||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||    
T  34294869 aagccttcaaagacattgaatctaccactaaggtaatcaattcaaaatctttggtttagggtt 34294931  T

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Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 176 - 214
Target Start/End: Complemental strand, 41501505 - 41501467
Alignment:
Q  176 ttgattgaatatgcaattgagggtcctaatgatgtgtct 214  Q
    ||||||||||||||||||||||||||||||||| |||||    
T  41501505 ttgattgaatatgcaattgagggtcctaatgatatgtct 41501467  T

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Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 175 - 208
Target Start/End: Original strand, 19140764 - 19140797
Alignment:
Q  175 tttgattgaatatgcaattgagggtcctaatgat 208  Q
    |||||||||||||| |||||||||||||||||||    
T  19140764 tttgattgaatatgaaattgagggtcctaatgat 19140797  T

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Target: chr5 (Bit Score: 119; Significance: 6e-61; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 15 - 177
Target Start/End: Original strand, 29635862 - 29636024
Alignment:
Q  15 tcaaaaatcagttgcaataaaccaccaccatctccaccttatttcctcgtcctccgcggtcgtgcaaccacaaaggggtattcaaaagccttcaaagaca 114  Q
    ||||||||||||||| ||||| ||||||| |||||||||||||||  |||||||||| ||||||||||| |||||||  |||||||||| ||||||||||    
T  29635862 tcaaaaatcagttgcgataaatcaccaccgtctccaccttatttcgccgtcctccgccgtcgtgcaaccgcaaagggacattcaaaagctttcaaagaca 29635961  T
Q  115 ttgaatctaccaccaaggtaatcaattaaaaatctttggtttagggttttgaaatttggattt 177  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29635962 ttgaatctaccaacaaggtaatcaattaaaaatctttggtttagggttttgaaatttggattt 29636024  T

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Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 176 - 214
Target Start/End: Original strand, 29636056 - 29636094
Alignment:
Q  176 ttgattgaatatgcaattgagggtcctaatgatgtgtct 214  Q
    ||||||||||||||||||||||||||||||||| |||||    
T  29636056 ttgattgaatatgcaattgagggtcctaatgatatgtct 29636094  T

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Target: scaffold0049 (Bit Score: 115; Significance: 1e-58; HSPs: 2)
Name: scaffold0049
Description:

Target: scaffold0049; HSP #1
Raw Score: 115; E-Value: 1e-58
Query Start/End: Original strand, 15 - 177
Target Start/End: Original strand, 45530 - 45692
Alignment:
Q  15 tcaaaaatcagttgcaataaaccaccaccatctccaccttatttcctcgtcctccgcggtcgtgcaaccacaaaggggtattcaaaagccttcaaagaca 114  Q
    ||||||||||||||||||||| ||||||| |||||||||||||||  |||||||||| ||||| ||||  |||||||  |||||||||| ||||||||||    
T  45530 tcaaaaatcagttgcaataaatcaccaccgtctccaccttatttcaccgtcctccgccgtcgtacaactgcaaagggacattcaaaagctttcaaagaca 45629  T
Q  115 ttgaatctaccaccaaggtaatcaattaaaaatctttggtttagggttttgaaatttggattt 177  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  45630 ttgaatctaccaccaaggtaatcaattaaaaatatttggtttagggttttgaaatttggattt 45692  T

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Target: scaffold0049; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 176 - 208
Target Start/End: Original strand, 45724 - 45756
Alignment:
Q  176 ttgattgaatatgcaattgagggtcctaatgat 208  Q
    |||||||||||| ||||||||||||||||||||    
T  45724 ttgattgaatattcaattgagggtcctaatgat 45756  T

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Target: chr3 (Bit Score: 96; Significance: 3e-47; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 34 - 173
Target Start/End: Complemental strand, 678527 - 678388
Alignment:
Q  34 aaccaccaccatctccaccttatttcctcgtcctccgcggtcgtgcaaccacaaaggggtattcaaaagccttcaaagacattgaatctaccaccaaggt 133  Q
    |||||||||  ||||| ||||||||| |||||||| |  |||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||    
T  678527 aaccaccactttctccgccttatttcgtcgtcctctgtcgtcgtgcaaccacaaagggacattcaaaagccttcaaagacattgaatctaccaccaaggt 678428  T
Q  134 aatcaattaaaaatctttggtttagggttttgaaatttgg 173  Q
    ||||||||| ||||||||||||||||||||| ||||||||    
T  678427 aatcaattataaatctttggtttagggtttttaaatttgg 678388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 175 - 208
Target Start/End: Complemental strand, 678353 - 678320
Alignment:
Q  175 tttgattgaatatgcaattgagggtcctaatgat 208  Q
    |||||||||||||| |||||||||||||||||||    
T  678353 tttgattgaatatgtaattgagggtcctaatgat 678320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 85; Significance: 1e-40; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 17 - 173
Target Start/End: Complemental strand, 39052405 - 39052249
Alignment:
Q  17 aaaaatcagttgcaataaaccaccaccatctccaccttatttcctcgtcctccgcggtcgtgcaaccacaaaggggtattcaaaagccttcaaagacatt 116  Q
    ||||||| ||||||  ||| ||||||  |||||| | ||||||  ||| |||||| |||||||||||||||||||  ||||| || |||| ||||||| |    
T  39052405 aaaaatctgttgcagcaaatcaccacggtctccatcctatttcgccgttctccgccgtcgtgcaaccacaaagggacattcagaaacctttaaagacact 39052306  T
Q  117 gaatctaccaccaaggtaatcaattaaaaatctttggtttagggttttgaaatttgg 173  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39052305 gaatctaccaccaaggtaatcaattaaaaatctttggtttagggttttgaaatttgg 39052249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 67; Significance: 6e-30; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 17 - 147
Target Start/End: Complemental strand, 3694932 - 3694802
Alignment:
Q  17 aaaaatcagttgcaataaaccaccaccatctccaccttatttcctcgtcctccgcggtcgtgcaaccacaaaggggtattcaaaagccttcaaagacatt 116  Q
    ||||||| ||||||  ||| ||||||  |||||||| ||||||  ||| |||||| |||||||||||||||||||| ||||| || |||| ||||||| |    
T  3694932 aaaaatctgttgcagcaaatcaccacggtctccaccctatttcgccgttctccgccgtcgtgcaaccacaaaggggcattcagaaacctttaaagacact 3694833  T
Q  117 gaatctaccaccaaggtaatcaattaaaaat 147  Q
    |||||||||||||||||||||||||||||||    
T  3694832 gaatctaccaccaaggtaatcaattaaaaat 3694802  T

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