View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2608_low_22 (Length: 223)
Name: NF2608_low_22
Description: NF2608
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2608_low_22 |
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Alignment Details
Target: chr6 (Bit Score: 141; Significance: 4e-74; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 141; E-Value: 4e-74
Query Start/End: Original strand, 60 - 208
Target Start/End: Original strand, 5612666 - 5612814
Alignment:
| Q |
60 |
atctctatttcgtgcccttgaagcccttcataagaggttttatgagagaaggaaattacaaaagattaaggaataaatttgtgggtaatacacagattac |
159 |
Q |
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| T |
5612666 |
atctctattacgtgcccttgaagcccttcataagaggttttatgagagaaggaaattacaaaagattaaggaataaatttgtgggtaatacacagattac |
5612765 |
T |
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| Q |
160 |
atcaaaccgaagcttgagagttaaatataaacatgaagattgaagaatc |
208 |
Q |
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| T |
5612766 |
atcaaaccgaagcttgagagttaaaaataaacatgaagattgaagaatc |
5612814 |
T |
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Target: chr1 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 155 - 208
Target Start/End: Original strand, 30385621 - 30385674
Alignment:
| Q |
155 |
attacatcaaaccgaagcttgagagttaaatataaacatgaagattgaagaatc |
208 |
Q |
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| T |
30385621 |
attacatcaaaccgaagcttgtgagctaaagataaacaaggagatcgaagaatc |
30385674 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 96 - 124
Target Start/End: Original strand, 6411777 - 6411805
Alignment:
| Q |
96 |
gttttatgagagaaggaaattacaaaaga |
124 |
Q |
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| T |
6411777 |
gttttatgagagaaggaaattacaaaaga |
6411805 |
T |
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