View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2608_low_26 (Length: 204)
Name: NF2608_low_26
Description: NF2608
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2608_low_26 |
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Alignment Details
Target: chr1 (Bit Score: 129; Significance: 6e-67; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 129; E-Value: 6e-67
Query Start/End: Original strand, 18 - 190
Target Start/End: Complemental strand, 26845479 - 26845316
Alignment:
| Q |
18 |
gtactgttgtcagaaattagaaaggagtattattatggccttacattaattttttatctttacaatttatgctgaaaacttacaagttttgtctttgttt |
117 |
Q |
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| T |
26845479 |
gtacagttgtcagaaattagaaaggagtattattatggccttacattaattttttatctttacaatttgtgctgaaaacttacaagtt---------ttt |
26845389 |
T |
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| Q |
118 |
tcttcttgagttgggagttagctaggtgcatggagttatcaaaagacatttttagttattctgttagaattat |
190 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
26845388 |
tcttcttgagttgggagttagctaggtgcatggagttatcaaaagacatttttagttattctgttggaattat |
26845316 |
T |
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