View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2608_low_6 (Length: 464)
Name: NF2608_low_6
Description: NF2608
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2608_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 409; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 409; E-Value: 0
Query Start/End: Original strand, 16 - 456
Target Start/End: Original strand, 45936033 - 45936473
Alignment:
| Q |
16 |
atatgattgattgtgaatttttgatagtgtaaattttcctctattcactgattccatatttttccaatgtaggaaggaaccgaaagttttcagtttgaag |
115 |
Q |
| |
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||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
45936033 |
atatgattgattgtgaattgttgatagtgtaaattttcctctactcactgattccatatttttccaatgtaggaaggaaccgaaagttttcggtttgaag |
45936132 |
T |
|
| Q |
116 |
agaacatgaaattttgcgaattcagattatttcctttccctgttagctcaattttacagacttggaacatagaacaggaatagaaaattcaaatacaaaa |
215 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
45936133 |
agaacatgaaattttgcgaattctgattatttcctttccctgttagctcaattttacagacttggaacatagaacaggaatggaaaattcaaatacaaaa |
45936232 |
T |
|
| Q |
216 |
tctaggcaatggctaaaacagcatttttattttacattttgaattgacaaatttatgtcagcattgtatatgtatcatatgagtatagattcacaaagca |
315 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45936233 |
tctaggcaatggctaaaacagcatttttattttacattttgaaatgacatatttatgtcagcattgtatatgtatcatatgagtatagattcacaaagca |
45936332 |
T |
|
| Q |
316 |
tgtgatgagatatatgttgtgggagaaggtgaaacactcaacacaatcagtgaaaagtgtggtgacccgtttattgtagagaggaatccacatatccatg |
415 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45936333 |
tgtgatgagatatatgttgtgggagaaggtgaaacactcaacacaatcagtgaaaagtgtggtgacccgtttattgtagagaggaatccacatatccatg |
45936432 |
T |
|
| Q |
416 |
atccagatgatgttttccctggtcttgttatcagtattatc |
456 |
Q |
| |
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|
| T |
45936433 |
atccagatgatgttttccctggtcttgttatcagaattatc |
45936473 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 306 - 456
Target Start/End: Original strand, 45924375 - 45924525
Alignment:
| Q |
306 |
tcacaaagcatgtgatgagatatatgttgtgggagaaggtgaaacactcaacacaatcagtgaaaagtgtggtgacccgtttattgtagagaggaatcca |
405 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45924375 |
tcacaaagcatgtgatgagatatatgttgtgggagaaggtgaaacactcaacacaatcagtgaaaagtgtggtgacccgtttattgtagagaggaatcca |
45924474 |
T |
|
| Q |
406 |
catatccatgatccagatgatgttttccctggtcttgttatcagtattatc |
456 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |||||| |
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|
| T |
45924475 |
catatccatgatccagatgatgttttccctggtcttgttatcagaattatc |
45924525 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 316 - 448
Target Start/End: Original strand, 26303197 - 26303329
Alignment:
| Q |
316 |
tgtgatgagatatatgttgtgggagaaggtgaaacactcaacacaatcagtgaaaagtgtggtgacccgtttattgtagagaggaatccacatatccatg |
415 |
Q |
| |
|
|||||||||||||| ||||| || || || || ||||| | ||||| ||||||||||||||||| || | |||||| || |||||||||||| |||| |
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|
| T |
26303197 |
tgtgatgagatatacgttgttggcgagggagagacacttcaaacaataagtgaaaagtgtggtgatccttatattgttgaagagaatccacatattcatg |
26303296 |
T |
|
| Q |
416 |
atccagatgatgttttccctggtcttgttatca |
448 |
Q |
| |
|
|||| ||||||||||||||||| |||||||||| |
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|
| T |
26303297 |
atcctgatgatgttttccctggccttgttatca |
26303329 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 213; Significance: 1e-116; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 213; E-Value: 1e-116
Query Start/End: Original strand, 43 - 303
Target Start/End: Original strand, 15818079 - 15818339
Alignment:
| Q |
43 |
tgtaaattttcctctattcactgattccatatttttccaatgtaggaaggaaccgaaagttttcagtttgaagagaacatgaaattttgcgaattcagat |
142 |
Q |
| |
|
|||||||||||||||| ||||||||||| |||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||| |||||| ||| |
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|
| T |
15818079 |
tgtaaattttcctctactcactgattccctatttttccaatgtaggaaggaaccggaagttttcggtttgaagagaacatgaaattttgggaattctgat |
15818178 |
T |
|
| Q |
143 |
tatttcctttccctgttagctcaattttacagacttggaacatagaacaggaatagaaaattcaaatacaaaatctaggcaatggctaaaacagcatttt |
242 |
Q |
| |
|
|| ||||||||||||||||||||||||||| ||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
15818179 |
tacttcctttccctgttagctcaattttactgacttagaacatagaacaggaatggaaaattcaaatacaaaatctaggcaatggctaaaacagcatttt |
15818278 |
T |
|
| Q |
243 |
tattttacattttgaattgacaaatttatgtcagcattgtatatgtatcatatgagtatag |
303 |
Q |
| |
|
|||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||| |
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|
| T |
15818279 |
tattttacattttgaaatgacatatttatgtcagcattgtatatgtatcatatgagtatag |
15818339 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 120 - 303
Target Start/End: Original strand, 15831266 - 15831448
Alignment:
| Q |
120 |
catgaaattttgcgaattcagattatttcctttccctgttagctcaattttacagacttggaacatagaacaggaatagaaaattcaaatacaaaatcta |
219 |
Q |
| |
|
|||||| ||||| |||||| ||||||||||||||||||||||||||||||||| ||||| |||| |||||||||||| || ||||||||||||||||||| |
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|
| T |
15831266 |
catgaatttttgggaattctgattatttcctttccctgttagctcaattttactgacttagaacgtagaacaggaatggataattcaaatacaaaatcta |
15831365 |
T |
|
| Q |
220 |
ggcaatggctaaaacagcatttttattttacattttgaattgacaaatttatgtcagcattgtatatgtatcatatgagtatag |
303 |
Q |
| |
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|||||||||| |||||||||||||||||| ||||||||| ||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
15831366 |
ggcaatggct-aaacagcatttttatttttcattttgaaatgacatatttatgtcagcattgtatatgtatcatatgagtatag |
15831448 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 63; Significance: 3e-27; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 49 - 228
Target Start/End: Original strand, 5186340 - 5186523
Alignment:
| Q |
49 |
ttttcctctattcactgattccatattttt----ccaatgtaggaaggaaccgaaagttttcagtttgaagagaacatgaaattttgcgaattcagatta |
144 |
Q |
| |
|
||||||||| ||||||||||||| ||||| || ||||| | | ||| |||||||||||||||||||||||| | ||| ||| | || ||| |
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|
| T |
5186340 |
ttttcctctcctcactgattccattttttttcttccgatgtaagcatgaatcgaaagttttcagtttgaagagaataagaattttggggagttctctgat |
5186439 |
T |
|
| Q |
145 |
tttcctttccctgttagctcaattttacagacttggaacatagaacaggaatagaaaattcaaatacaaaatctaggcaatggc |
228 |
Q |
| |
|
||||||| ||||||||||||||||| || ||||| |||||||||| |||||| ||||||||||||||||||||||||||||||| |
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|
| T |
5186440 |
tttccttaccctgttagctcaatttcactgacttagaacatagaagaggaatggaaaattcaaatacaaaatctaggcaatggc |
5186523 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 180 - 242
Target Start/End: Original strand, 5164621 - 5164683
Alignment:
| Q |
180 |
gaacatagaacaggaatagaaaattcaaatacaaaatctaggcaatggctaaaacagcatttt |
242 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||| |
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|
| T |
5164621 |
gaacatagaacaggaatggaaaattcaaatacaaaatttaggcaatggctaaaacagcatttt |
5164683 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 49 - 165
Target Start/End: Original strand, 5191949 - 5192064
Alignment:
| Q |
49 |
ttttcctctattcactgattccatatttt-tccaatgtaggaaggaaccgaaagttttcagtttgaagagaacatgaaattttgcgaattcagattattt |
147 |
Q |
| |
|
||||||||| ||||||||||| |||||| ||| ||||||||||| ||||||||||||||||||||||||||| ||| ||||| || ||| ||| ||| |
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|
| T |
5191949 |
ttttcctctcctcactgattccttattttgtccgatgtaggaaggtcccgaaagttttcagtttgaagagaacaagaatttttgggagttctgat--ttt |
5192046 |
T |
|
| Q |
148 |
cctttccctgttagctca |
165 |
Q |
| |
|
||||||||| |||||||| |
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|
| T |
5192047 |
cctttccctattagctca |
5192064 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 49 - 122
Target Start/End: Original strand, 5164552 - 5164626
Alignment:
| Q |
49 |
ttttcctctattcactgattccatat-ttttccaatgtaggaaggaaccgaaagttttcagtttgaagagaacat |
122 |
Q |
| |
|
||||||||| ||||||||||| ||| |||| ||||||||| |||||||||||||||||||||||| |||||||| |
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|
| T |
5164552 |
ttttcctctcctcactgattccttatatttttcaatgtaggcaggaaccgaaagttttcagtttgatgagaacat |
5164626 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 190 - 242
Target Start/End: Original strand, 5192063 - 5192115
Alignment:
| Q |
190 |
caggaatagaaaattcaaatacaaaatctaggcaatggctaaaacagcatttt |
242 |
Q |
| |
|
||||||| ||||||||| ||| ||||||||||||||||||||||||||||||| |
|
|
| T |
5192063 |
caggaatggaaaattcatataaaaaatctaggcaatggctaaaacagcatttt |
5192115 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 53; Significance: 3e-21; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 308 - 448
Target Start/End: Complemental strand, 42240290 - 42240150
Alignment:
| Q |
308 |
acaaagcatgtgatgagatatatgttgtgggagaaggtgaaacactcaacacaatcagtgaaaagtgtggtgacccgtttattgtagagaggaatccaca |
407 |
Q |
| |
|
||||||| ||||||||||||||||| || | ||||| || || || | ||||| |||||||| |||||||| || ||||||||||| ||||||||| |
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| T |
42240290 |
acaaagcgtgtgatgagatatatgtggttcgtgaaggagagactcttcatacaataagtgaaaaatgtggtgatccatttattgtagaagagaatccaca |
42240191 |
T |
|
| Q |
408 |
tatccatgatccagatgatgttttccctggtcttgttatca |
448 |
Q |
| |
|
||| ||||| |||||||||||||| || ||||||||||||| |
|
|
| T |
42240190 |
tattcatgacccagatgatgtttttccaggtcttgttatca |
42240150 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 340 - 448
Target Start/End: Complemental strand, 12631380 - 12631272
Alignment:
| Q |
340 |
gaaggtgaaacactcaacacaatcagtgaaaagtgtggtgacccgtttattgtagagaggaatccacatatccatgatccagatgatgttttccctggtc |
439 |
Q |
| |
|
|||||||| ||||| |||||||| ||||| |||||| ||| || |||||||| |||| ||||| ||||| ||||| || |||||||| |||||||||| |
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|
| T |
12631380 |
gaaggtgagacacttaacacaattagtgataagtgtaatgatccttttattgttgagaataatcctcatattcatgaccctgatgatgtcttccctggtc |
12631281 |
T |
|
| Q |
440 |
ttgttatca |
448 |
Q |
| |
|
||||||||| |
|
|
| T |
12631280 |
ttgttatca |
12631272 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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