View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2608_low_7 (Length: 390)

Name: NF2608_low_7
Description: NF2608
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2608_low_7
NF2608_low_7
[»] chr4 (3 HSPs)
chr4 (16-196)||(42756424-42756606)
chr4 (279-373)||(42756689-42756785)
chr4 (322-373)||(13909906-13909957)
[»] chr6 (2 HSPs)
chr6 (16-203)||(24360617-24360807)
chr6 (279-321)||(24360883-24360925)
[»] chr2 (6 HSPs)
chr2 (16-203)||(20442981-20443171)
chr2 (279-373)||(6467033-6467129)
chr2 (100-203)||(6467206-6467311)
chr2 (279-321)||(20442863-20442905)
chr2 (334-371)||(41752905-41752942)
chr2 (322-371)||(45661220-45661269)
[»] scaffold1315 (2 HSPs)
scaffold1315 (16-203)||(1547-1733)
scaffold1315 (279-373)||(1375-1471)
[»] scaffold1293 (2 HSPs)
scaffold1293 (16-203)||(338-524)
scaffold1293 (279-373)||(600-696)
[»] chr8 (1 HSPs)
chr8 (329-374)||(38291340-38291385)
[»] scaffold0211 (1 HSPs)
scaffold0211 (337-373)||(16017-16053)
[»] scaffold0024 (1 HSPs)
scaffold0024 (329-369)||(46261-46301)


Alignment Details
Target: chr4 (Bit Score: 136; Significance: 8e-71; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 136; E-Value: 8e-71
Query Start/End: Original strand, 16 - 196
Target Start/End: Original strand, 42756424 - 42756606
Alignment:
Q  16 atagacacaagaaataaagtgccacatcattttaagacgtcactttgtcaaccacatcattttgttgtagatgttaacgcaactcttttcttttatctag 115  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||| ||| ||||| |||||||||||||| |    
T  42756424 atagacacaagaaataaagtgccacatcattttaaaacgtcactttgtcaaccacatcattttcttgtagatggtaatgcaacccttttcttttatctgg 42756523  T
Q  116 gattgggacc--aagactacagtaaacaagattaaagttcaaaagttgaggtatttgaaagaaaaaaggttgaataaaagcaa 196  Q
    ||||||| ||  |||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42756524 gattggggccataagaataccgtaaacaagattaaagttcaaaagttgaggtatttgaaagaaaaaaggttgaataaaagcaa 42756606  T

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Target: chr4; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 279 - 373
Target Start/End: Original strand, 42756689 - 42756785
Alignment:
Q  279 tttatcataatgattggagctccgagggagcctgtaatgactt--atcattgcatttggctaagagaaatcccataagtgagattgacaccacatct 373  Q
    |||||||||||||||||||||||||||||||||||||||||||  |||||  ||||||||| ||||||| |||||||||||||||||||||||||||    
T  42756689 tttatcataatgattggagctccgagggagcctgtaatgacttgaatcatcacatttggcttagagaaaccccataagtgagattgacaccacatct 42756785  T

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Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 322 - 373
Target Start/End: Complemental strand, 13909957 - 13909906
Alignment:
Q  322 atcattgcatttggctaagagaaatcccataagtgagattgacaccacatct 373  Q
    |||||| |||||| |||||||||| |||| || |||||||||||||||||||    
T  13909957 atcattacatttgtctaagagaaaccccacaaatgagattgacaccacatct 13909906  T

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Target: chr6 (Bit Score: 133; Significance: 5e-69; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 133; E-Value: 5e-69
Query Start/End: Original strand, 16 - 203
Target Start/End: Original strand, 24360617 - 24360807
Alignment:
Q  16 atagacacaagaaataaagtgccacatcattttaagacgtcactttgtcaaccacatcattttgttgtagatgttaacgcaactcttttcttttatctag 115  Q
    ||||||||||||||||||||||||||||||||||| ||  |||||||||||||||||||||||||||||||||||||| |||| |||||||||||||| |    
T  24360617 atagacacaagaaataaagtgccacatcattttaaaacaccactttgtcaaccacatcattttgttgtagatgttaacacaacccttttcttttatctgg 24360716  T
Q  116 gattgggaccaagactacagtaaacaagattaaagttcaaaagttgaggtatttgaaag---aaaaaaggttgaataaaagcaattgcatg 203  Q
    ||||||||||||| || |  |||||||||||||||||||||||||||||||||||||||   |||||| ||||||||||||||||||||||    
T  24360717 gattgggaccaaggctgccataaacaagattaaagttcaaaagttgaggtatttgaaaggaaaaaaaaagttgaataaaagcaattgcatg 24360807  T

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Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 279 - 321
Target Start/End: Original strand, 24360883 - 24360925
Alignment:
Q  279 tttatcataatgattggagctccgagggagcctgtaatgactt 321  Q
    ||||||||||||||||||||||  |||||||||||||||||||    
T  24360883 tttatcataatgattggagctctaagggagcctgtaatgactt 24360925  T

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Target: chr2 (Bit Score: 133; Significance: 5e-69; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 133; E-Value: 5e-69
Query Start/End: Original strand, 16 - 203
Target Start/End: Complemental strand, 20443171 - 20442981
Alignment:
Q  16 atagacacaagaaataaagtgccacatcattttaagacgtcactttgtcaaccacatcattttgttgtagatgttaacgcaactcttttcttttatctag 115  Q
    ||||||||||||||||||||||||||||||||||| ||  |||||||||||||||||||||||||||||||||||||| |||| |||||||||||||| |    
T  20443171 atagacacaagaaataaagtgccacatcattttaaaacaccactttgtcaaccacatcattttgttgtagatgttaacacaacccttttcttttatctgg 20443072  T
Q  116 gattgggaccaagactacagtaaacaagattaaagttcaaaagttgaggtatttgaaag---aaaaaaggttgaataaaagcaattgcatg 203  Q
    ||||||||||||| || |  |||||||||||||||||||||||||||||||||||||||   |||||| ||||||||||||||||||||||    
T  20443071 gattgggaccaaggctgccataaacaagattaaagttcaaaagttgaggtatttgaaaggaaaaaaaaagttgaataaaagcaattgcatg 20442981  T

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Target: chr2; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 279 - 373
Target Start/End: Complemental strand, 6467129 - 6467033
Alignment:
Q  279 tttatcataatgattggagctccgagggagcctgtaatgactt--atcattgcatttggctaagagaaatcccataagtgagattgacaccacatct 373  Q
    |||||||||||  |||||||||||||||| |||||||||||||  |||||   |||||| ||||||||| |  ||||||||||||||||||||||||    
T  6467129 tttatcataatatttggagctccgagggatcctgtaatgacttggatcatcatatttggataagagaaacctgataagtgagattgacaccacatct 6467033  T

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Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 100 - 203
Target Start/End: Complemental strand, 6467311 - 6467206
Alignment:
Q  100 cttttcttttatctaggattgggaccaagactacagtaaacaagattaaagttcaaaagttgaggtatttgaaagaaaaaaggttg--aataaaagcaat 197  Q
    ||||||||||||||||||||| ||| ||| |||    ||||||||||| ||||||||||| |  ||||||||||||| | ||||||   | |||||||||    
T  6467311 cttttcttttatctaggattgcgactaaggctatcacaaacaagattagagttcaaaagtggctgtatttgaaagaacataggttgtttaaaaaagcaat 6467212  T
Q  198 tgcatg 203  Q
    ||||||    
T  6467211 tgcatg 6467206  T

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Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 279 - 321
Target Start/End: Complemental strand, 20442905 - 20442863
Alignment:
Q  279 tttatcataatgattggagctccgagggagcctgtaatgactt 321  Q
    ||||||||||||||||||||||  |||||||||||||||||||    
T  20442905 tttatcataatgattggagctctaagggagcctgtaatgactt 20442863  T

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Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 334 - 371
Target Start/End: Original strand, 41752905 - 41752942
Alignment:
Q  334 ggctaagagaaatcccataagtgagattgacaccacat 371  Q
    ||||||||||| |||||||| |||||||||||||||||    
T  41752905 ggctaagagaattcccataaatgagattgacaccacat 41752942  T

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Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 322 - 371
Target Start/End: Complemental strand, 45661269 - 45661220
Alignment:
Q  322 atcattgcatttggctaagagaaatcccataagtgagattgacaccacat 371  Q
    |||||| |||||| |||||||||| ||||||| |||||||||||| ||||    
T  45661269 atcattacatttgtctaagagaaaccccataaatgagattgacactacat 45661220  T

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Target: scaffold1315 (Bit Score: 128; Significance: 4e-66; HSPs: 2)
Name: scaffold1315
Description:

Target: scaffold1315; HSP #1
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 16 - 203
Target Start/End: Complemental strand, 1733 - 1547
Alignment:
Q  16 atagacacaagaaataaagtgccacatcattttaagacgtcactttgtcaaccacatcattttgttgtagatgttaacgcaactcttttcttttatctag 115  Q
    ||||||||||||||||| ||||||||||||||||| ||||| |||||| |||||||||||||||||||||||||||| ||| | | ||||||| |||| |    
T  1733 atagacacaagaaataa-gtgccacatcattttaaaacgtcgctttgttaaccacatcattttgttgtagatgttaaagcagcccgtttctttaatctgg 1635  T
Q  116 gattgggaccaagactacagtaaacaagattaaagttcaaaagttgaggtatttgaaagaaaaaaggttgaataaaagcaattgcatg 203  Q
    ||||||||||||| ||||  |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1634 gattgggaccaaggctaccataaataagattaaagttcaaaagttgaggtatttgaaagaaaaaaggttgaataaaagcaattgcatg 1547  T

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Target: scaffold1315; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 279 - 373
Target Start/End: Complemental strand, 1471 - 1375
Alignment:
Q  279 tttatcataatgattggagctccgagggagcctgtaatgactt--atcattgcatttggctaagagaaatcccataagtgagattgacaccacatct 373  Q
    ||||||||||||||| |||||| ||||||| || |||||||||  |||||  ||||||||||||||||| |||||||||||||||||||||||||||    
T  1471 tttatcataatgattagagctctgagggagtctataatgacttgaatcatcacatttggctaagagaaaccccataagtgagattgacaccacatct 1375  T

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Target: scaffold1293 (Bit Score: 128; Significance: 4e-66; HSPs: 2)
Name: scaffold1293
Description:

Target: scaffold1293; HSP #1
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 16 - 203
Target Start/End: Original strand, 338 - 524
Alignment:
Q  16 atagacacaagaaataaagtgccacatcattttaagacgtcactttgtcaaccacatcattttgttgtagatgttaacgcaactcttttcttttatctag 115  Q
    ||||||||||||||||| ||||||||||||||||| ||||| |||||| |||||||||||||||||||||||||||| ||| | | ||||||| |||| |    
T  338 atagacacaagaaataa-gtgccacatcattttaaaacgtcgctttgttaaccacatcattttgttgtagatgttaaagcagcccgtttctttaatctgg 436  T
Q  116 gattgggaccaagactacagtaaacaagattaaagttcaaaagttgaggtatttgaaagaaaaaaggttgaataaaagcaattgcatg 203  Q
    ||||||||||||| ||||  |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  437 gattgggaccaaggctaccataaataagattaaagttcaaaagttgaggtatttgaaagaaaaaaggttgaataaaagcaattgcatg 524  T

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Target: scaffold1293; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 279 - 373
Target Start/End: Original strand, 600 - 696
Alignment:
Q  279 tttatcataatgattggagctccgagggagcctgtaatgactt--atcattgcatttggctaagagaaatcccataagtgagattgacaccacatct 373  Q
    ||||||||||||||| |||||| ||||||| || |||||||||  |||||  ||||||||||||||||| |||||||||||||||||||||||||||    
T  600 tttatcataatgattagagctctgagggagtctataatgacttgaatcatcacatttggctaagagaaaccccataagtgagattgacaccacatct 696  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 329 - 374
Target Start/End: Complemental strand, 38291385 - 38291340
Alignment:
Q  329 catttggctaagagaaatcccataagtgagattgacaccacatctg 374  Q
    |||||| |||||||||||||||||| | ||||||||||||||||||    
T  38291385 catttgactaagagaaatcccataaataagattgacaccacatctg 38291340  T

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Target: scaffold0211 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0211
Description:

Target: scaffold0211; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 337 - 373
Target Start/End: Original strand, 16017 - 16053
Alignment:
Q  337 taagagaaatcccataagtgagattgacaccacatct 373  Q
    ||||||||||| || ||||||||||||||||||||||    
T  16017 taagagaaatcacacaagtgagattgacaccacatct 16053  T

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Target: scaffold0024 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 329 - 369
Target Start/End: Original strand, 46261 - 46301
Alignment:
Q  329 catttggctaagagaaatcccataagtgagattgacaccac 369  Q
    |||||| ||||||||||| |||||||||| |||||||||||    
T  46261 catttgactaagagaaatgccataagtgatattgacaccac 46301  T

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