View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2608_low_9 (Length: 312)
Name: NF2608_low_9
Description: NF2608
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2608_low_9 |
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Alignment Details
Target: chr8 (Bit Score: 237; Significance: 1e-131; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 16 - 297
Target Start/End: Complemental strand, 328406 - 328112
Alignment:
| Q |
16 |
caaaggttcaagatatatcatttattttatccaaaagaatgtaagagtcaacaacaacacatcacacattaccaagtgagccaaagga------------ |
103 |
Q |
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| T |
328406 |
caaaggttcaagatatatcatttattttatccaaaagaatgtaagagtcaacaacaacacatcacacattaccaagtgagccaaaggatgcttgcaaaag |
328307 |
T |
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| Q |
104 |
--aaataattgagaaggtagataatatttcatctcgtaggatatttgagaatataagtttatggagaaaagaataaagacctggagttaaacaaatagat |
201 |
Q |
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| T |
328306 |
gaaaataattgagaaggtagataatatttcatctcctaggatatttgagaatataagtttatggagaaaagaataaagacctggagttaaacaaatagat |
328207 |
T |
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| Q |
202 |
ggctcagtggtctcttggaaacttgcacagattgccttgagtactgctgcttttgacagtttgcctaaataccagttcaaaacaaaatatgatatt |
297 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
328206 |
ggctcagtggtctcttggaaacttgcacagattgccttgagtactgctgcttttgacagtttgcct-aataccagttcaaaacaaaatatgatatt |
328112 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 47; Significance: 8e-18; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 177 - 259
Target Start/End: Original strand, 27412548 - 27412630
Alignment:
| Q |
177 |
aagacctggagttaaacaaatagatggctcagtggtctcttggaaacttgcacagattgccttgagtactgctgcttttgaca |
259 |
Q |
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||||||||||||||| ||||| ||||| ||||||||||||||||||| |||||| ||||||||||| || |||| | |||||| |
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| T |
27412548 |
aagacctggagttaagcaaattgatggttcagtggtctcttggaaacctgcacacattgccttgagaaccgctggtcttgaca |
27412630 |
T |
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