View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2609-Insertion-2 (Length: 724)
Name: NF2609-Insertion-2
Description: NF2609
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2609-Insertion-2 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 579; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 579; E-Value: 0
Query Start/End: Original strand, 8 - 724
Target Start/End: Original strand, 5135737 - 5136462
Alignment:
| Q |
8 |
ttcttctcatattcctgccaccctaggaaatatgaagaatcttggccatgagagttgcatgtggcttttgtagatagcaacttcannnnnnn---ctttt |
104 |
Q |
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| T |
5135737 |
ttcttctcatattcctgccaccctaggaaatatgaagaatcttggccatgagagttgcatgtggcttttgtagatagcaacttcattttttttttctttt |
5135836 |
T |
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| Q |
105 |
gtggtaggggattactaaggaaatgaaaaatttaaagaaagaatgtatgagagggactagactatnnnnnnnnnnnnnngggagatacttgatctttgga |
204 |
Q |
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||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||| |
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| T |
5135837 |
gtggtaggggattactactgaaatgaaaaatttaaagaaagaatgtatgagagggactagacta-----gagagagagagagagatacttgatctttgga |
5135931 |
T |
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| Q |
205 |
ctaaaatgttagaagatggatggat---tggtgtatgatgttgtagtgaggcaagtatttatatatgcaaaatcaatcacatacccaaaggttaccacgt |
301 |
Q |
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| T |
5135932 |
ctaaaatgttagaagatagatggatgattggtgtatgatgttgtagtgaggcaaatatttatatatgcaaaatcaatcacatacccaaaggttaccacgt |
5136031 |
T |
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| Q |
302 |
gatgctgaaaataacacttttgaccaaagtaatagtctcactctcattgccaacgcggaaagataaagtgatatatatggtggaaagttgcaaaaccctt |
401 |
Q |
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| T |
5136032 |
gatgctgaaaataacacttttgaccaaagtaatagtctcactctcattgccaacgcggaaagataaagtgatatatatggtggaaagttgcaaaaccctt |
5136131 |
T |
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| Q |
402 |
atga--------atgaatgtgttaatgttttgtattttacgcactatacccaccgtcccatacaattcacgcaaaatatacaaactccctaatattgctc |
493 |
Q |
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| T |
5136132 |
atgaatgaatgaatgaatgtgttaatgttttgtattttacgcactatacccaccgtcccatacaattcacgcaaaatatacaaactccctaatattgctc |
5136231 |
T |
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| Q |
494 |
tcaattggtcagcttataaaatatcatttatttgtcatccactggctacactttccatcttaatcttaacacaaaaattatgtgttacttactccaaaga |
593 |
Q |
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| T |
5136232 |
tcaattggtcagcttataaaatatcatttatttgtcatccactggctacactttccatcttaatcttaacacaaaaattatgtgttacttactccaaaga |
5136331 |
T |
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| Q |
594 |
tttatttctatgttggtaaatatttttagaatgtaactagggttagggttaatatttagaaaaacagaaagaaacaaaagtgagtaaacttgtgatggga |
693 |
Q |
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| T |
5136332 |
tttatttctatgttagtaaatatttttagaatgtaactagggttagggttaatatttagaaaaacagaaagaaacaaaagtgagtaaacttgtgatggga |
5136431 |
T |
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| Q |
694 |
gggatatagtagactttttagtggcgccgag |
724 |
Q |
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| T |
5136432 |
gggatatagtagactttttagtggcgccgag |
5136462 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 9 - 68
Target Start/End: Complemental strand, 38879757 - 38879698
Alignment:
| Q |
9 |
tcttctcatattcctgccaccctaggaaatatgaagaatcttggccatgagagttgcatg |
68 |
Q |
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||||||||||||||||||||||||| ||||| |||||||| |||| |||||||||||||| |
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| T |
38879757 |
tcttctcatattcctgccaccctagaaaatacgaagaatcatggcaatgagagttgcatg |
38879698 |
T |
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