View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2609-Insertion-3 (Length: 628)
Name: NF2609-Insertion-3
Description: NF2609
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2609-Insertion-3 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 574; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 574; E-Value: 0
Query Start/End: Original strand, 7 - 628
Target Start/End: Complemental strand, 751250 - 750630
Alignment:
| Q |
7 |
attaattttgttttgacttaaattaaaacaacaaattaatatgaaaattgtattaatatattgtggtgacatgcatgcaggtggtgtgacatctatgcac |
106 |
Q |
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| T |
751250 |
attaattttgttttgacttaaattaaaacaacaaattaatatgaaaattatattaatatattgtggtgacatgca----ggtggtgtgacatctatgcac |
751155 |
T |
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| Q |
107 |
ccatttctgaagaagtttttcccagcagtatacagaaagacagtgttagaggcaggattagatagtaattactgcaaatatgataatcaaggattgcagt |
206 |
Q |
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| T |
751154 |
ccatttctgaagaagtttttcccagcagtatacagaaagacagtgttagaggcaggattagatagtaattactgcaaatatgataatcaaggattgcagt |
751055 |
T |
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| Q |
207 |
tatttacatcatccttatacctagctgcattaacttcaactttctttgcatcctatacaactcgaacaatggggagaagactcaccatgttgattgccgg |
306 |
Q |
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| T |
751054 |
tatttacatcatccttatacctagctgcattaacttcaactttctttgcatcctatacaactcgaacaatggggagaagactcaccatgttgattgccgg |
750955 |
T |
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| Q |
307 |
atttttcttcattgctggagttgcattcaatgctgctgctcaaaaccttgctatgctcattgttggcagaatcttacttggttgtggtgttggttttgct |
406 |
Q |
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| T |
750954 |
atttttcttcattgctggagttgcattcaatgctgctgctcaaaaccttgccatgctcattgttggcagaatcttacttggttgtggtgttggttttgct |
750855 |
T |
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| Q |
407 |
aatcaggtactattcaaatctcaattaattaattatccaacttttactgtatacatgtgattctttcgttcattattgttttaaaatgtttgcttaatta |
506 |
Q |
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| T |
750854 |
aatcaggtactattcaaatcttaattaatcaattatccaacttttactgtatacatgtgattctttcgttcattattgttttaaaatgtttgcttaatta |
750755 |
T |
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| Q |
507 |
tagtcattaggatcaatgttattttaagtatcattgatatttgttttgtgcttcatgaacatgc---taatgtcggtattagtgtctttcttcatctaat |
603 |
Q |
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| T |
750754 |
tagtcattaggatcaatgttattttaagtatcattgatatttgttttgtgcttcatgaacatgctaataatgtcggtataagtgtctttcttcatctaat |
750655 |
T |
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| Q |
604 |
cacatgcattaacgtgtagttttaa |
628 |
Q |
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| T |
750654 |
cacatgcattaacgtgtagttttaa |
750630 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 98; Significance: 6e-48; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 98; E-Value: 6e-48
Query Start/End: Original strand, 192 - 389
Target Start/End: Complemental strand, 10794497 - 10794317
Alignment:
| Q |
192 |
atcaaggattgcagttatttacatcatccttatacctagctgcattaacttcaactttctttgcatcctatacaactcgaacaatggggagaagactcac |
291 |
Q |
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| T |
10794497 |
atcaaggattgcagttatttacatcatccttgtaactagctgcattaacttccactttctttgcatcctataccactcgtacgttggggggaagactcac |
10794398 |
T |
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| Q |
292 |
catgttgattgccggatttttcttcattgctggagttgcattcaatgctgctgctcaaaaccttgctatgctcattgttggcagaatcttacttggtt |
389 |
Q |
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| T |
10794397 |
catgt-----------------ttcattgctggagttgcattcaatgctgcagctcagaaccttgctatgctcattattggcagaatcttacttggtt |
10794317 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 45; Significance: 2e-16; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 170 - 414
Target Start/End: Original strand, 47207951 - 47208195
Alignment:
| Q |
170 |
agtaattactgcaaatatgataatcaaggattgcagttatttacatcatccttatacctagctgcattaacttcaactttctttgcatcctatacaactc |
269 |
Q |
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| T |
47207951 |
agtaactactgcaaatacgataatcaagggctgcagctattcacttcatcattgtatttggcgggtttaacagtaaccttcttcgcgtcttatacaactc |
47208050 |
T |
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| Q |
270 |
gaacaatggggagaagactcaccatgttgattgccggatttttcttcattgctggagttgcattcaatgctgctgctcaaaaccttgctatgctcattgt |
369 |
Q |
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| T |
47208051 |
gagtactagggagaaggctcacaatgttgattgctggctttttcttcatagctggagttagtcttaatgcatctgctcaaaaccttctcatgctcatcgt |
47208150 |
T |
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| Q |
370 |
tggcagaatcttacttggttgtggtgttggttttgctaatcaggt |
414 |
Q |
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| T |
47208151 |
tggtagggtcttacttggctgtggaattggttttgcaaaccaggt |
47208195 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 363 - 414
Target Start/End: Original strand, 47184357 - 47184408
Alignment:
| Q |
363 |
tcattgttggcagaatcttacttggttgtggtgttggttttgctaatcaggt |
414 |
Q |
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| T |
47184357 |
tcattcttggcagaatcatacttggttgtggtgttggtttcgccaatcaggt |
47184408 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 362 - 414
Target Start/End: Original strand, 47197393 - 47197445
Alignment:
| Q |
362 |
ctcattgttggcagaatcttacttggttgtggtgttggttttgctaatcaggt |
414 |
Q |
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| T |
47197393 |
ctcatttttggcagaatcttacttggttgcggagttggttttgccaaccaggt |
47197445 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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