View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2609-Insertion-4 (Length: 499)

Name: NF2609-Insertion-4
Description: NF2609
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2609-Insertion-4
NF2609-Insertion-4
[»] chr1 (1 HSPs)
chr1 (8-499)||(49727105-49727599)


Alignment Details
Target: chr1 (Bit Score: 397; Significance: 0; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 397; E-Value: 0
Query Start/End: Original strand, 8 - 499
Target Start/End: Original strand, 49727105 - 49727599
Alignment:
Q  8 tttaaggtgttaagcggtgaaatttccatcaaattacaagtttctcagaattgttctagctgccatgatctttatggtggtcaatgtctacttgataaca 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49727105 tttaaggtgttaagcggtgaaatttccatcaaattacaagtttctcagaattgttctagctgccatgatctttatggtggtcaatgtctacttgataaca 49727204  T
Q  108 atggccagttttattgtaaacaaggtaaggtaccatctcaaattactcaaattattatactctattcttgccacaaattcaatccagattaatgttgttg 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49727205 atggccagttttattgtaaacaaggtaaggtaccatctcaaattactcaaattattatactctattcttgccacaaattcaatccagattaatgttgttg 49727304  T
Q  208 ggaatttttgtttcgtttcatttctgttgttgacttttatc-aacnnnnnnnncctggtgttgacttgtattttttatttaaagatgataaataagtaga 306  Q
    ||||||||||||||||||||||||||||||||||||||||| |||        ||||  |||||||||||||||||||||||||||||||||||||||||    
T  49727305 ggaatttttgtttcgtttcatttctgttgttgacttttatcaaacaaaaaaaacctg--gttgacttgtattttttatttaaagatgataaataagtaga 49727402  T
Q  307 aaatgaaaattttgaatttattaaggcctcccattcgaccaactaccactttacaacgtttacgcaatgttctttgagattaaaagtcttaaca----nn 402  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||          
T  49727403 aaatgaaaattttgaatttattaaggcctcccattcgaccaactaccactttacaacgtttacgcaatgttctttgagattaaaagtcttaacatttttt 49727502  T
Q  403 nnnnnnnnnngacaagaaaagtctaacatgttaacactgattctgagttgatatctcttcagaaattatgttgttatattgctgaatctttatttta 499  Q
              ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  49727503 atttttttttgacaagaaaagtctaacatgttaacactgattctgagttgacatctcttcagaaattatgttgttatattgctgaatctttatttta 49727599  T

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