View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2609R-Insertion-16 (Length: 800)
Name: NF2609R-Insertion-16
Description: NF2609R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2609R-Insertion-16 |
 | |
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Alignment Details
Target: chr5 (Bit Score: 545; Significance: 0; HSPs: 9)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 545; E-Value: 0
Query Start/End: Original strand, 9 - 617
Target Start/End: Original strand, 27217849 - 27218457
Alignment:
| Q |
9 |
tttgttgcagaacagttgggctaaatacaatacattgagtacaagatactcccccctttgataaattgtttctttcgcgaagaagtacaagagcacacgg |
108 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27217849 |
tttgttgcagaacagttgggctaaatacaatacattgagtacaagatactcccccctttgataaattgtttctttcgcgaagaagtacaagagcacacgg |
27217948 |
T |
|
| Q |
109 |
aatcatactaaccagattcgttacataaccctttttcttctggctattctcgttataactactatgtcaggtttcgagtttccatttgcagcaagactcc |
208 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
27217949 |
aatcatactaaccagattcgttacataaccctttttcttctgattattctcgttataactactatgtcaggttttgagtttccatttgcagcaagactct |
27218048 |
T |
|
| Q |
209 |
cattgctaaatccatgtccaataaaccacatcttgaatgaagcactttccacttcctcttcagaagggccattcttgccgaaattacataaggtaaagac |
308 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27218049 |
cattgctaaatccatgtccaataaagcacatcttgaatgaagcactttccacttcctcttcagaagggccattcttgccgaaattacataaggtaaagat |
27218148 |
T |
|
| Q |
309 |
tgaaggatatttcaaaagaagcatccatcacaccagaaaggccattcttcctaaaatacctaggattattccaaatgtaatcctgaaatgcccaacaaag |
408 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27218149 |
tgaaggatatttcaaaagaagcatccgtcacaccagaaaggccattcttcctaaaatacctaggattattccaaatgtaatcctgaaatgcccaacaaag |
27218248 |
T |
|
| Q |
409 |
attttgaacttagcttcagaccaaaatgtaccggcttcacaggtgaccaaaaaactttccctttttgaattgtctcggggttctcatttaatccggagag |
508 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||| |
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|
| T |
27218249 |
attttgaacttagcttcagaccaaaatgtaccggcttcacaggtgaccaaaaaactttccctttttgaattgtctcggggttatcatttaatccggggag |
27218348 |
T |
|
| Q |
509 |
accattggcgtgttctgttagaataaataatacttttccaataacggttgcatctgctgaaggtagtgttattccccaaaggccaattttcttcttgtgt |
608 |
Q |
| |
|
|||||| ||||||| ||||||||| || ||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
27218349 |
accattagcgtgttttgttagaatcaaaaatacttttccaacaacggttgcatttgctgaaggtagtgttattccccaaaggccaattttcttcttgtgt |
27218448 |
T |
|
| Q |
609 |
tctgatatt |
617 |
Q |
| |
|
||| ||||| |
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|
| T |
27218449 |
tctaatatt |
27218457 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 151; E-Value: 2e-79
Query Start/End: Original strand, 611 - 772
Target Start/End: Original strand, 27218598 - 27218760
Alignment:
| Q |
611 |
tgatattatagataatagaaacaccatgtcaattaaaagagggttcaatattttaacattcaaaatgacctaaattcaacagtttgcagatgaaaatatg |
710 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
27218598 |
tgatattatagataatagaaacaccatgtcaattaaaagagggttcaatattttaacattcaaaatgacctaaattcaacagtttgcagatgaaaatatg |
27218697 |
T |
|
| Q |
711 |
atgctcagctgaagagattgtaatataaagtcaattacacaaggtt-atcaacaacttgcaga |
772 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||| |
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|
| T |
27218698 |
atgctcagctgaagagattgtaatttaaagtcaattacacaaggttaatcaacaacttgcaga |
27218760 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 119; E-Value: 2e-60
Query Start/End: Original strand, 172 - 368
Target Start/End: Original strand, 27202224 - 27202421
Alignment:
| Q |
172 |
atgtcaggtttcgagtttccatttgcagcaagactcccattgctaaatccatgtccaataaaccacatcttgaatgaagcactttccacttcctcttcag |
271 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||| |||||||||||| || |||||||||||||||||||||||||||||||||||||||||||| || |
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|
| T |
27202224 |
atgtcaggtt--gagtttccatttgcagcaagactctcattgctaaatctatatccaataaaccacatcttgaatgaagcactttccacttcctctttag |
27202321 |
T |
|
| Q |
272 |
aagggccattcttgccgaaat---tacataaggtaaagactgaaggatatttcaaaagaagcatccatcacaccagaaaggccattcttcctaaaatacc |
368 |
Q |
| |
|
||||||||||||||| || | |||| |||||||||| |||||||||||| |||||||||||| ||||||||||| |||||| |||||||||||||| |
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|
| T |
27202322 |
aagggccattcttgcgaaactacgtacagaaggtaaagattgaaggatatttagaaagaagcatccttcacaccagaagggccatccttcctaaaatacc |
27202421 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 105; E-Value: 5e-52
Query Start/End: Original strand, 611 - 751
Target Start/End: Original strand, 27211630 - 27211769
Alignment:
| Q |
611 |
tgatattatagataatagaaacaccatgtcaattaaaagagggttcaatattttaacattcaaaatgacctaaattcaacagtttgcagatgaaaatatg |
710 |
Q |
| |
|
|||||||||| |||| ||| ||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||| | |
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|
| T |
27211630 |
tgatattataaataacagatacaccatgtcaattaaa-gaggattcaatattttaacattcaaaatgacctaaattcaacagcttgcagatgaaaatacg |
27211728 |
T |
|
| Q |
711 |
atgctcagctgaagagattgtaatataaagtcaattacaca |
751 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||||||| |
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|
| T |
27211729 |
atgttcagctgaagagattgtaatataaagtcaattacaca |
27211769 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 58; E-Value: 6e-24
Query Start/End: Original strand, 389 - 530
Target Start/End: Original strand, 27202410 - 27202551
Alignment:
| Q |
389 |
tcctgaaatgcccaacaaagattttgaacttagcttcagaccaaaatgtaccggcttcacaggtgaccaaaaaactttccctttttgaattgtctcgggg |
488 |
Q |
| |
|
|||| |||| ||||||||||| ||||| | |||||||||||||| ||| || | ||| |||||||||| ||||||||||| |||||||| ||| | ||| |
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|
| T |
27202410 |
tcctaaaatacccaacaaagaatttgagcctagcttcagaccaatatgcacagcctttacaggtgacccaaaaactttccttttttgaactgttttggga |
27202509 |
T |
|
| Q |
489 |
ttctcatttaatccggagagaccattggcgtgttctgttaga |
530 |
Q |
| |
|
||||| || ||||| | |||||||||||| |||||||||||| |
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|
| T |
27202510 |
ttctcgttcaatccagggagaccattggcatgttctgttaga |
27202551 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 542 - 603
Target Start/End: Original strand, 27211406 - 27211467
Alignment:
| Q |
542 |
ttttccaataacggttgcatctgctgaaggtagtgttattccccaaaggccaattttcttct |
603 |
Q |
| |
|
|||||||| ||| |||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
27211406 |
ttttccaacaacagttgcatctgctgaaggtagtgttattctccaaaggccaattttcttct |
27211467 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 557 - 605
Target Start/End: Original strand, 24091473 - 24091521
Alignment:
| Q |
557 |
tgcatctgctgaaggtagtgttattccccaaaggccaattttcttcttg |
605 |
Q |
| |
|
||||||||||||||||||||||| ||| || || ||||||||||||||| |
|
|
| T |
24091473 |
tgcatctgctgaaggtagtgttactccacatagtccaattttcttcttg |
24091521 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 766 - 796
Target Start/End: Original strand, 27211847 - 27211877
Alignment:
| Q |
766 |
ttgcagatgaatatacaatgttcagctgaag |
796 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
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|
| T |
27211847 |
ttgcagatgaatatacaatgttcagctgaag |
27211877 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 766 - 796
Target Start/End: Original strand, 27218767 - 27218797
Alignment:
| Q |
766 |
ttgcagatgaatatacaatgttcagctgaag |
796 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
27218767 |
ttgcagatgaatatacaatgttcagctgaag |
27218797 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 110; Significance: 5e-55; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 110; E-Value: 5e-55
Query Start/End: Original strand, 153 - 603
Target Start/End: Original strand, 37578911 - 37579359
Alignment:
| Q |
153 |
tattctcgttataactactatgtcaggtttcgagtttccatttgcagcaagactcccattgctaaatccatgtccaataaaccacatcttgaatgaagca |
252 |
Q |
| |
|
|||||| ||||||||| | ||||||||||| |||| | | ||||||||||||||| || ||||||| |||||||||| |||||||||||| ||||||||| |
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|
| T |
37578911 |
tattcttgttataacttccatgtcaggttttgagtctgcttttgcagcaagactctcactgctaaaaccatgtccaacaaaccacatcttaaatgaagca |
37579010 |
T |
|
| Q |
253 |
ctttccacttcctcttcagaagggccattcttgccgaaattacataaggtaaagactgaaggatatttcaaaagaagcatccatcacaccagaaaggcca |
352 |
Q |
| |
|
|||| |||||| ||||||||||| || | ||||| ||| || || | |||| | ||||||||||||||||||||| ||||| | ||| | | |
|
|
| T |
37579011 |
cttttcacttcttcttcagaaggaccctgcttgctaaaaccacctaggctaaaaattgaaggatatttcaaaagaag---ccatcttccaagactg---a |
37579104 |
T |
|
| Q |
353 |
ttcttcctaaaatacctaggattattccaaatgt----aatcctgaaatgcccaacaaagattttgaacttagcttcagaccaaaatgtaccggcttcac |
448 |
Q |
| |
|
| ||||| |||| |||||||||||||||||| || || | |||| || |||| ||||||||| | || ||||| |||||||||||||||| |||| |
|
|
| T |
37579105 |
tacttccaaaaagacctaggattattccaaaagtgatgtatgcgaaaattcctaacagagattttgagcctatcttcacaccaaaatgtaccggcctcac |
37579204 |
T |
|
| Q |
449 |
aggtgaccaaaaaactttccctttttgaattgtctcggggttctcatttaatccggagagaccattggcgtgttctgttagaataaataatacttttcca |
548 |
Q |
| |
|
|| ||||||||| ||||||| || | || |||| ||| ||||||| ||||| | |||||| | | || ||||||||||| | ||| ||||||| |
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|
| T |
37579205 |
agatgaccaaaagactttcctcttctcaacagtcttgggactctcattcaatcctgggagaccttcagggttttctgttagaaccgaaaatgtttttcca |
37579304 |
T |
|
| Q |
549 |
ataacggttgcatctgctgaaggtagtgttattccccaaaggccaattttcttct |
603 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
37579305 |
acaacggttgcatctgctgaaggtagtgttattccccaaagaccaattttcttct |
37579359 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 172 - 284
Target Start/End: Complemental strand, 3296948 - 3296836
Alignment:
| Q |
172 |
atgtcaggtttcgagtttccatttgcagcaagactcccattgctaaatccatgtccaataaaccacatcttgaatgaagcactttccacttcctcttcag |
271 |
Q |
| |
|
||||||||||| | |||||| | || |||||||||| | || ||||| || |||| | ||||||||||||||| ||||| ||||| || |||||||| | |
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|
| T |
3296948 |
atgtcaggttttgtgtttccttgtgaagcaagactctcgttactaaaaccgcgtccgacaaaccacatcttgaacgaagcgctttctacctcctcttctg |
3296849 |
T |
|
| Q |
272 |
aagggccattctt |
284 |
Q |
| |
|
|||||| ||||| |
|
|
| T |
3296848 |
cagggccgttctt |
3296836 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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