View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2609R-Insertion-18 (Length: 875)
Name: NF2609R-Insertion-18
Description: NF2609R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2609R-Insertion-18 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 582; Significance: 0; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 582; E-Value: 0
Query Start/End: Original strand, 179 - 860
Target Start/End: Original strand, 2334165 - 2334845
Alignment:
| Q |
179 |
caaattgattttatttacctaccaattgtttgttaaaatcttggccacaattgttatttactttaggaatatttcaaccacaaacaaaattaatgcacat |
278 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
2334165 |
caaattgattttatttacctacca-ttgtttgttaaaatcttggccacaattgttatttactttaggaatatttcaaccacgaacaaaattaatgcacat |
2334263 |
T |
|
| Q |
279 |
tatttgacaaacaattcttcgtacccgccattgcatgaattggagccatataaaaaataacgcaaaaaggaaatcaattctccatactaaaaattggagc |
378 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
2334264 |
tatttgacaaacaattcttcgtacccgccattgcatgaattggagccatataaaaaataacgcaaaaaggaaatcaattctccatataaaaaattggagc |
2334363 |
T |
|
| Q |
379 |
catttcataaatctactgagaaataatcttcttttaggtattattttatctacatacatttttattttcttcacgggtaactcttgattacaaagaaaaa |
478 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2334364 |
catttcataaatctactgacaaataatcttcttttaggtattattttctctacatacttttttattttcttcacgggtaactcttgattacaaagaaaaa |
2334463 |
T |
|
| Q |
479 |
acattaaatcagagaaagttttatcttacatagtatgtaaaaattagatttgcagacacggatgtaatggaagaggtggtgtgggaggagagagagatga |
578 |
Q |
| |
|
||||||||||||||||||||||||||| | |||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2334464 |
acattaaatcagagaaagttttatcttccgtagtatgtaaaaattagatttggagacacgaatgtaatggaagaggtggtgtgggaggagagagagatga |
2334563 |
T |
|
| Q |
579 |
aatatagatttgaaaggatgaaaacaaacaataacataatttaaaataggaccggagggagtacttaatttaaaatgcttaaagagtgccccactacccc |
678 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||| |||||| ||||| |
|
|
| T |
2334564 |
aaaatagatttgaaaggatgaaaacaaacaataacataatttaaaataggatcggatggagtacttaatttaaaatgcttaaagaatgccccgataccca |
2334663 |
T |
|
| Q |
679 |
aggcatcaacaaatgccacctcctaaagagcaccacacagttcccactcatagcatcatctcaagagacaatcatttgccgcggcaaaactttaattttc |
778 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
2334664 |
aggcatctacaaatgccacctcctaaagagcaccacacaattcccactcatagcatcatctcaagagacaatcagttgccgcggcaaaactttaattttc |
2334763 |
T |
|
| Q |
779 |
tccaccaattctttctcctttttaattatatttttgaaaatacaatcatttctcgctttctaaattattaaaatagccacac |
860 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||| |
|
|
| T |
2334764 |
tccaccaattctttcgcctttttaattatatttttgaaaatacaatcatttctcactttctaaattatcaaaatagccacac |
2334845 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 7 - 64
Target Start/End: Original strand, 2333786 - 2333843
Alignment:
| Q |
7 |
cacttatcaattcaatagagtatgcatgtccatatgtggaaaagaaacaagagcatac |
64 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2333786 |
cacttatcaattcaatagattatgcatgtccatatgtggaaaagaaacaagagcatac |
2333843 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 99 - 134
Target Start/End: Original strand, 2333868 - 2333903
Alignment:
| Q |
99 |
taatatatgccttatttccacgtttataattttaag |
134 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
|
|
| T |
2333868 |
taatatatgccttatttccacgtttataattttaag |
2333903 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 151; Significance: 2e-79; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 151; E-Value: 2e-79
Query Start/End: Original strand, 160 - 618
Target Start/End: Complemental strand, 54183104 - 54182650
Alignment:
| Q |
160 |
taaagatgtattacttatccaaattgattttatttacctaccaattgtttgttaaaatcttggccacaattgttatttactttaggaatatttcaaccac |
259 |
Q |
| |
|
|||||||||| ||||||| |||||||||||||||||||||||| |||||||||||||||| |||| |||||||||||||||| |||| ||||| |
|
|
| T |
54183104 |
taaagatgtaatacttatacaaattgattttatttacctacca-ttgtttgttaaaatctaggcc--------tatttactttaggaatgtttccaccac |
54183014 |
T |
|
| Q |
260 |
aa-acaaaattaatgcacattatttgacaaacaattcttcgtacccgccattgcatgaattggagccatataaaaaataac--------gcaaaaaggaa |
350 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||| || |||||||||||||||||||||||| | | || | ||||||||| |
|
|
| T |
54183013 |
gttacaaaattaatgtacattatttgacaaacaattcttcatagccgccattgcatgaattggagccagagttgagatcctctgtatttgtaaaaaggaa |
54182914 |
T |
|
| Q |
351 |
atcaattctccatactaaaaattggagccatttcataaatctactgagaaataatcttcttttaggtattattttatctacatacatttttattttcttc |
450 |
Q |
| |
|
||||| | | |||| ||||||||||||||||||||||||||||| |||||||||| ||||||||||| || | ||||| ||| |||||||||| |
|
|
| T |
54182913 |
atcaaattttcatat---aaattggagccatttcataaatctactgaaaaataatctt---ttaggtattatcttcttcacatatttttatattttcttc |
54182820 |
T |
|
| Q |
451 |
acgggtaactcttgattacaaagaaaaaacattaaatcagagaaagttttatcttacatagtatgtaaaa---attagatttgcagacacggatgtaatg |
547 |
Q |
| |
|
|| | ||||||||||||||||||||||| |||||||||||||||| |||||||||| ||||||||| || | ||| || |||||| |||||||||| |
|
|
| T |
54182819 |
acagataactcttgattacaaagaaaaatcattaaatcagagaaa-ttttatcttatgtagtatgtagaaactagtagccttacagacatggatgtaatg |
54182721 |
T |
|
| Q |
548 |
gaagaggtggtgtgggaggagagagagatgaaatatagatttgaaaggatgaaaacaaacaataacataat |
618 |
Q |
| |
|
||||||||||||||||||| ||||||||||||| | |||||||||||||||||||| |||||| |||||| |
|
|
| T |
54182720 |
gaagaggtggtgtgggaggtgagagagatgaaaattggatttgaaaggatgaaaacagacaatatcataat |
54182650 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 95 - 160
Target Start/End: Complemental strand, 54183408 - 54183343
Alignment:
| Q |
95 |
tttctaatatatgccttatttccacgtttataattttaagcttttgacggtatcgatccgttctct |
160 |
Q |
| |
|
||||||||| || ||||||||||| | || ||| |||||||||||||| | ||||||||||||||| |
|
|
| T |
54183408 |
tttctaataaataccttatttccatgattttaaatttaagcttttgactgcatcgatccgttctct |
54183343 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 122; Significance: 4e-62; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 122; E-Value: 4e-62
Query Start/End: Original strand, 213 - 397
Target Start/End: Original strand, 45282664 - 45282846
Alignment:
| Q |
213 |
aaaatcttggccacaattgttatttactttaggaatatttcaaccacaaacaaaattaatgcacattatttgacaaacaattcttcgtacccgccattgc |
312 |
Q |
| |
|
||||||| ||||| | |||||||||||||||||||| |||||||||| ||||||| ||||||||||||||||||||||||||||| || |||||||||| |
|
|
| T |
45282664 |
aaaatctaggccaaacttgttatttactttaggaatgtttcaaccacgtacaaaatgaatgcacattatttgacaaacaattcttcatagccgccattgc |
45282763 |
T |
|
| Q |
313 |
atgaattggagccatataaaaaataacgcaaaaaggaaatcaattctccatactaaaaattggagccatttcataaatctactga |
397 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||| | |||||||| ||||||||||||||||||| |
|
|
| T |
45282764 |
atgaattggagccatataaaaaataacgcaaaaaggaaatcaattttccata--tacaattggaggcatttcataaatctactga |
45282846 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University