View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2609R-Insertion-19 (Length: 1030)
Name: NF2609R-Insertion-19
Description: NF2609R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2609R-Insertion-19 |
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Alignment Details
Target: chr5 (Bit Score: 464; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 464; E-Value: 0
Query Start/End: Original strand, 7 - 482
Target Start/End: Complemental strand, 3544819 - 3544344
Alignment:
| Q |
7 |
caaagccatcaagacaagtgttatcatcagtaagtgcagcactgacccaagtctgcacgttggtcatgtgccacacaaagtcctctccaacagcatgacc |
106 |
Q |
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| T |
3544819 |
caaagccatcaagacaagtgttatcatcagtaagtgcagcactgacccaagtctgcacgttggtcatgtgccacacaaagtcctctccaacagcatgacc |
3544720 |
T |
|
| Q |
107 |
aatactgcctaactccctaaccgattggctaagactgtccaaactgtcacccatgttttctatgcagtcttgtacggctctgtactcccttggcttgatg |
206 |
Q |
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| T |
3544719 |
aatactgcctaactccctaaccgattggctaagactgtccaaactgtcacccatgttttctatgcagtcttgtacggctctgtactcccttggcttgatg |
3544620 |
T |
|
| Q |
207 |
cctcttgcttttgatatcttctttacaaatgatgcactcgatcgtgtcctagatatgctcactgatagagcagttatcgttagttgtcgctcgctttggc |
306 |
Q |
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| T |
3544619 |
cctcttgcttttgatatcttctttacaaacgatgcactcgatcgtgtcctagatatgctcactgatagagcagttatcgttagttgtcgctcgctttggc |
3544520 |
T |
|
| Q |
307 |
caatcacactcgcataccccatgagacattgaacacataaaacaggatagcgagtagctctgcatgaggacttgatgaactctgacggggttatagagga |
406 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
3544519 |
caatcacactcgcataccccatgagacattgaacacataaaacaggatagcgagtagctctgcatgaggacctgatgaactctgacggggttatagagga |
3544420 |
T |
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| Q |
407 |
ttctgcagtgacaagactcatgaagaccagcaaataaaccccggctctagccgccatgtttactagcaatgtagtg |
482 |
Q |
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| T |
3544419 |
ttctgcagtgacaagactcatgaagaccagcaaataaaccccggctctagccgccatgtttactagcaatatagtg |
3544344 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 250; E-Value: 1e-138
Query Start/End: Original strand, 551 - 843
Target Start/End: Complemental strand, 3544283 - 3543989
Alignment:
| Q |
551 |
ggaaataggactgtagaaagtgggagacatgtattattgtatctatatgtgactgtgaatggattgctaccgtatcccactttctttttnnnnnnnggaa |
650 |
Q |
| |
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|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
3544283 |
ggaaataggactgtaggaagtgggagacatgtattattgtatctatatgtgactgtgaatggattgctaccgtatcccactttcttttttaaaaaaggaa |
3544184 |
T |
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| Q |
651 |
aatattggcaggttatctttaaatttattaatatattcttttgaagatatcgcttcttttttgacaagttttaaagataaagcaacttttgttgacatgt |
750 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3544183 |
aatattggcaggttatctttaaatttattaatatattcttttgaagatatcgcttcttttttgacaagttttaaagataaagcaacttttgttgacatgt |
3544084 |
T |
|
| Q |
751 |
tttaagtggcactgctttcccttgaa-aaaatctgcttagccgcatcctcccagtggtaaaagttatctaaaggatg-aaaaacattaaagaaaa |
843 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
3544083 |
tttaagtggcactgctttcccttgaaaaaaatctgcttagccgcatcctcctagtggtaaaagttatctaaaggatgaaaaaacattaaagaaaa |
3543989 |
T |
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