View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2609R-Insertion-3 (Length: 131)
Name: NF2609R-Insertion-3
Description: NF2609R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2609R-Insertion-3 |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 107; Significance: 5e-54; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 107; E-Value: 5e-54
Query Start/End: Original strand, 9 - 131
Target Start/End: Complemental strand, 40363566 - 40363444
Alignment:
| Q |
9 |
cttctcaaatctacaaatagatttcttattattctgaataaccctaaatattgatcccaattcttatggaaaattgtaacatccaaaggacaaaataatt |
108 |
Q |
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| T |
40363566 |
cttctcaaatctacaaatagatttcttattattctgaataaccctaaatgttgacaccaattcttatggaaaatcgtaacatccaaaggacaaaataatt |
40363467 |
T |
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| Q |
109 |
tccaacaactccttccaataaag |
131 |
Q |
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| T |
40363466 |
tccaacaactccttccaataaag |
40363444 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000001
Query Start/End: Original strand, 13 - 127
Target Start/End: Complemental strand, 40359392 - 40359278
Alignment:
| Q |
13 |
tcaaatctacaaatagatttcttattattctgaataaccctaaatattgatcccaa-ttcttatggaaaattgtaacatccaaaggacaaaataatttcc |
111 |
Q |
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| T |
40359392 |
tcaaatctacgaatagatttcttattattccgaataaccctagacatcggtgccaacgtcttatgcagaattgtaatatcaaaaggac-aaacaaactcc |
40359294 |
T |
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| Q |
112 |
aacaactccttccaat |
127 |
Q |
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| T |
40359293 |
aacaactcctgccaat |
40359278 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000003
Query Start/End: Original strand, 70 - 129
Target Start/End: Complemental strand, 11346535 - 11346477
Alignment:
| Q |
70 |
tcttatggaaaattgtaacatccaaaggacaaaataatttccaacaactccttccaataa |
129 |
Q |
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| T |
11346535 |
tcttatgcgaaattgtaaaatccaaaggacaaac-aatttccaacaactcctgccaataa |
11346477 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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