View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2609R-Insertion-6 (Length: 270)
Name: NF2609R-Insertion-6
Description: NF2609R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2609R-Insertion-6 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 243; Significance: 1e-135; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 8 - 265
Target Start/End: Original strand, 8818491 - 8818746
Alignment:
| Q |
8 |
acaaagaaacaccatggtaaccaagtgctaatcattagttccatcttattgataacacatagtcctgatttccaattctgaaaattaaattgatcctcat |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8818491 |
acaaagaaacaccatggtaaccaagtgctaatcattagttccatcttattgataacacatagtcctgatttccaattctgaaaattaaattgatcctcat |
8818590 |
T |
|
| Q |
108 |
tataaaaatcaaacatcataaatatatggtgaaactacgtttgccattgcaaactcaagtttgagcttcccacaatagagccaaacaagtataaaaacaa |
207 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
8818591 |
tataaaaatcaaacatcataaatatatggtgaaactacgtttgccattgcaaactcaagtttgagcttcccacaatagagccaaacaagcataaaaacaa |
8818690 |
T |
|
| Q |
208 |
ctcatgtattacttcttatatacacattaacgatacatacacaacttttttcaaattc |
265 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
8818691 |
ctcatgtattacttcttatat--acattaacgatacatacacaacttttttcaaattc |
8818746 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University