View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2609_high_2 (Length: 391)
Name: NF2609_high_2
Description: NF2609
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2609_high_2 |
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Alignment Details
Target: chr3 (Bit Score: 218; Significance: 1e-120; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 127 - 377
Target Start/End: Complemental strand, 280668 - 280418
Alignment:
| Q |
127 |
gtgacatttttagaatgtgatgtgataaacatgtagcactatgcaagaagattctgtacacgattatcttcaggattagagccaccacaagagagttgca |
226 |
Q |
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| T |
280668 |
gtgacatttttagaatgtgatgtgataaacatgtagcactatgcaagaagactctgtacacgattatcttcaggattagagccaccacaagagagttgca |
280569 |
T |
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| Q |
227 |
cagctagctggccatttgtgccaccnnnnnnnagtcgaaatgtagaacttgtcacattgattgaacatgattgttttccaatacatgctttttcaaccac |
326 |
Q |
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| T |
280568 |
cagctagctggccatttgtgccacctttttttagtcgaaatgtagaacttgtcacattgattgaacatgattgttttccaatacatgctttttcaaccac |
280469 |
T |
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| Q |
327 |
tgtcttactatcacgtgattcccattcacctattttgaataacccacaact |
377 |
Q |
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| T |
280468 |
tgtcttactataacgtgattcccattcacctattttgaatgacccacaact |
280418 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 10 - 66
Target Start/End: Complemental strand, 280785 - 280729
Alignment:
| Q |
10 |
caatgcccgggtcaaagttctagttgaaactnnnnnnntgaatctatgatgatgatt |
66 |
Q |
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| T |
280785 |
caatgcccgggttaaagttctagttgaaactaaaaaaatgaatctatgatgatgatt |
280729 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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