View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2610_high_1 (Length: 784)

Name: NF2610_high_1
Description: NF2610
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2610_high_1
NF2610_high_1
[»] chr4 (3 HSPs)
chr4 (555-771)||(47710890-47711112)
chr4 (324-462)||(47710660-47710798)
chr4 (566-702)||(45772717-45772852)
[»] chr8 (3 HSPs)
chr8 (566-771)||(43305943-43306148)
chr8 (339-462)||(27266326-27266449)
chr8 (566-702)||(41828264-41828400)
[»] chr6 (4 HSPs)
chr6 (327-449)||(22991045-22991168)
chr6 (327-449)||(23797230-23797353)
chr6 (235-300)||(22991200-22991265)
chr6 (235-300)||(23797133-23797198)
[»] chr3 (1 HSPs)
chr3 (1-109)||(44356406-44356516)
[»] chr7 (1 HSPs)
chr7 (607-682)||(32606547-32606622)


Alignment Details
Target: chr4 (Bit Score: 187; Significance: 1e-101; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 555 - 771
Target Start/End: Original strand, 47710890 - 47711112
Alignment:
Q  555 gaatcataataatgggaaaccaaagattgcttttcttgttgggagcaattgctgttaattgtttactgtttcagtcaattttggttccacatgaaaatga 654  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  47710890 gaatcattataatgggaaaccaaagattgcttttcttgttgggagcaattgctgttaattgtttactgtttcagtcaattttggttccatatgaaaatga 47710989  T
Q  655 aagagctccttgatcttcttctgatttcaataatgctcttatggtggagaaa--gtgaatattcccattattgaagatgtaggagtgcataactatgcaa 752  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||    
T  47710990 aagagctccttgatcttcttctgatttcaataatgctcttatggtggagaaagtgtgaatattcccattattgaagatgtaggagtgcataactatgcaa 47711089  T
Q  753 ag----agtagtttagtttctga 771  Q
    ||    |||||||||||||||||    
T  47711090 agatgtagtagtttagtttctga 47711112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 127; E-Value: 4e-65
Query Start/End: Original strand, 324 - 462
Target Start/End: Original strand, 47710660 - 47710798
Alignment:
Q  324 ctcattgaatattgcatcagatgtaacagaaaaactatctaccttgaggtggtgaacatcactcccacagattctaccagctttcattttaattctgaca 423  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  47710660 ctcattgaatattgcatcatatgtaacagaaaaactatctaccttgaggtggtgaacatcactcccacagattctactagctttcattttaattctgaca 47710759  T
Q  424 tcattgggttcttcaaacatacaaaaatagttatatcag 462  Q
    ||||||||| |||||||||||||||||||||||||||||    
T  47710760 tcattgggtccttcaaacatacaaaaatagttatatcag 47710798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 81; E-Value: 1e-37
Query Start/End: Original strand, 566 - 702
Target Start/End: Original strand, 45772717 - 45772852
Alignment:
Q  566 atgggaaaccaaagattgcttttcttgttgggagcaattgctgttaattgtttactgtttcagtcaattttggttccacatgaaaatgaaagagctcctt 665  Q
    ||||||||||||| ||| ||||| ||||||| |||| |||||||||||||||||||||||||  |||||||||||||| | ||||||||||||| |||||    
T  45772717 atgggaaaccaaatattactttttttgttgg-agcacttgctgttaattgtttactgtttcaaccaattttggttccatacgaaaatgaaagagttcctt 45772815  T
Q  666 gatcttcttctgatttcaataatgctcttatggtgga 702  Q
    | ||||||||||||||| |||||||| ||||||||||    
T  45772816 ggtcttcttctgatttccataatgctgttatggtgga 45772852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 154; Significance: 3e-81; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 154; E-Value: 3e-81
Query Start/End: Original strand, 566 - 771
Target Start/End: Complemental strand, 43306148 - 43305943
Alignment:
Q  566 atgggaaaccaaagattgcttttcttgttgggagcaattgctgttaattgtttactgtttcagtcaattttggttccacatgaaaatgaaagagctcctt 665  Q
    ||||||||||||||||| ||||| |||||||||||| |||||||||||| |||||| ||||| ||||||||||||||| |||||||||||||||||||||    
T  43306148 atgggaaaccaaagattactttttttgttgggagcacttgctgttaattatttactatttcaatcaattttggttccatatgaaaatgaaagagctcctt 43306049  T
Q  666 gatcttcttctgatttcaataatgctcttatggtggagaaagtgaatattcccattattgaagatgtaggagtgcataactatgcaaagagtagtttagt 765  Q
    | |||||||||||||||||||||||| ||||||||||||||||||||| ||||||||| |||||||||||| |||||||| |||||||||||||||||||    
T  43306048 ggtcttcttctgatttcaataatgctgttatggtggagaaagtgaatactcccattatagaagatgtaggaatgcataaccatgcaaagagtagtttagt 43305949  T
Q  766 ttctga 771  Q
    ||||||    
T  43305948 ttctga 43305943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 96; E-Value: 1e-46
Query Start/End: Original strand, 339 - 462
Target Start/End: Original strand, 27266326 - 27266449
Alignment:
Q  339 atcagatgtaacagaaaaactatctaccttgaggtggtgaacatcactcccacagattctaccagctttcattttaattctgacatcattgggttcttca 438  Q
    ||||||||||| ||||||||||||||||||||||| |||||||| |||||||||||||| |||||| ||||||||||||||||||||||||||| |||||    
T  27266326 atcagatgtaatagaaaaactatctaccttgaggtagtgaacatgactcccacagattccaccagcattcattttaattctgacatcattgggtccttca 27266425  T
Q  439 aacatacaaaaatagttatatcag 462  Q
    |||||||||||||||| |||||||    
T  27266426 aacatacaaaaatagtgatatcag 27266449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 566 - 702
Target Start/End: Complemental strand, 41828400 - 41828264
Alignment:
Q  566 atgggaaaccaaagattgcttttcttgttgggagcaattgctgttaattgtttactgtttcagtcaattttggttccacatgaaaatgaaagagctcctt 665  Q
    ||||||||||||||||| ||||| ||  | |||||| ||||| ||||||||||| |||||||  |||||||||||||| |  ||||||||||||||||||    
T  41828400 atgggaaaccaaagattacttttttttgttggagcacttgctcttaattgtttattgtttcaaccaattttggttccatacaaaaatgaaagagctcctt 41828301  T
Q  666 gatcttcttctgatttcaataatgctcttatggtgga 702  Q
    | ||||||||||||||| |||||| | ||||||||||    
T  41828300 ggtcttcttctgatttccataatgttgttatggtgga 41828264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 88; Significance: 7e-42; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 88; E-Value: 7e-42
Query Start/End: Original strand, 327 - 449
Target Start/End: Complemental strand, 22991168 - 22991045
Alignment:
Q  327 attgaatattgca-tcagatgtaacagaaaaactatctaccttgaggtggtgaacatcactcccacagattctaccagctttcattttaattctgacatc 425  Q
    ||||||||||| | |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| | |||| ||||||||||||||||||||    
T  22991168 attgaatattgaaatcagatgtaacagaaaaactatctaccttgaggtagtgaacatcactcccacagattccaacagccttcattttaattctgacatc 22991069  T
Q  426 attgggttcttcaaacatacaaaa 449  Q
    || |||| ||||||||||||||||    
T  22991068 atggggtccttcaaacatacaaaa 22991045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 88; E-Value: 7e-42
Query Start/End: Original strand, 327 - 449
Target Start/End: Original strand, 23797230 - 23797353
Alignment:
Q  327 attgaatattgca-tcagatgtaacagaaaaactatctaccttgaggtggtgaacatcactcccacagattctaccagctttcattttaattctgacatc 425  Q
    ||||||||||| | |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| | |||| ||||||||||||||||||||    
T  23797230 attgaatattgaaatcagatgtaacagaaaaactatctaccttgaggtagtgaacatcactcccacagattccaacagccttcattttaattctgacatc 23797329  T
Q  426 attgggttcttcaaacatacaaaa 449  Q
    || |||| ||||||||||||||||    
T  23797330 atggggtccttcaaacatacaaaa 23797353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 235 - 300
Target Start/End: Complemental strand, 22991265 - 22991200
Alignment:
Q  235 ggaagtagcccttgaatcaaaattacagattatgtaggaaaccatttggagaaaaaaatcatcaaa 300  Q
    |||| |||||||| |||||||||  |||||||||||||||| |||||||||||||| |||||||||    
T  22991265 ggaaatagcccttaaatcaaaatcgcagattatgtaggaaatcatttggagaaaaagatcatcaaa 22991200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 235 - 300
Target Start/End: Original strand, 23797133 - 23797198
Alignment:
Q  235 ggaagtagcccttgaatcaaaattacagattatgtaggaaaccatttggagaaaaaaatcatcaaa 300  Q
    |||| |||||||| |||||||||  |||||||||||||||| |||||||||||||| |||||||||    
T  23797133 ggaaatagcccttaaatcaaaatcgcagattatgtaggaaatcatttggagaaaaagatcatcaaa 23797198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 76; Significance: 1e-34; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 76; E-Value: 1e-34
Query Start/End: Original strand, 1 - 109
Target Start/End: Original strand, 44356406 - 44356516
Alignment:
Q  1 ttgagtccattcaatgtctgtgctattttgaactgtatatacttctaagtgctctccaagtaatccaacc--tatagtgcacaagattgatgaaaaagtt 98  Q
    ||||||||||| ||||||||||||||||||  |||||||||||| ||| |||||||||||||||||||||  |||||| |||||||||||||||||||||    
T  44356406 ttgagtccatttaatgtctgtgctattttgttctgtatatacttttaattgctctccaagtaatccaacctatatagtacacaagattgatgaaaaagtt 44356505  T
Q  99 gacacacatat 109  Q
    |||||||||||    
T  44356506 gacacacatat 44356516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 64; Significance: 1e-27; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 607 - 682
Target Start/End: Complemental strand, 32606622 - 32606547
Alignment:
Q  607 tgttaattgtttactgtttcagtcaattttggttccacatgaaaatgaaagagctccttgatcttcttctgatttc 682  Q
    ||||||||||||||||||||| ||||||||||||||| | ||||||||||||||||||||||||||||||||||||    
T  32606622 tgttaattgtttactgtttcaatcaattttggttccatacgaaaatgaaagagctccttgatcttcttctgatttc 32606547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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