View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2610_high_11 (Length: 379)
Name: NF2610_high_11
Description: NF2610
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2610_high_11 |
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Alignment Details
Target: chr2 (Bit Score: 343; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 19 - 369
Target Start/End: Original strand, 45165901 - 45166251
Alignment:
| Q |
19 |
attattacataatggagaaaatggatgaaaatttaagttttgctgtactttatggtttaagactttcaaattcaatatgtaggccatgcctcagctaacc |
118 |
Q |
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| T |
45165901 |
attattacataatggagaatatggatgaaaatttaagttttgctgtactttatggtttaagactttcaaattcaatatgtaggccatgcctcagctaacc |
45166000 |
T |
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| Q |
119 |
gacagatcaaagcttccaagtattctagatcctgttatccaaaatacaatggatttgaagcatttatatcaggttcattgaatagaagtactgtaatcac |
218 |
Q |
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| T |
45166001 |
gacagatcaaagcttccaagtattctagatcctgttatccaaaatacaatggatttgaagcatttatatcaggttcattgaatagaagtactgtaatcac |
45166100 |
T |
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| Q |
219 |
atgttttaatgctgagtgttaaatgctagtacttcttaattcatctcaacattctactctacaggtagctgcagtggctgtgctatgtgtgcaagctgaa |
318 |
Q |
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| T |
45166101 |
atgttttaatgctgagtgttaaatgctagtacttcttaattcatctcaacattctactctacaggtagctgcagtggctgtgctatgtgtgcaagctgaa |
45166200 |
T |
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| Q |
319 |
ccaagttacaggccacttataacagatgttctacactctctcatccctttg |
369 |
Q |
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| T |
45166201 |
ccaagttataggccacttataacagatgttctacactctctcatccctttg |
45166251 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 281 - 366
Target Start/End: Complemental strand, 49121063 - 49120978
Alignment:
| Q |
281 |
aggtagctgcagtggctgtgctatgtgtgcaagctgaaccaagttacaggccacttataacagatgttctacactctctcatccct |
366 |
Q |
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| T |
49121063 |
aggttgctgcggtagctgtgctatgtgtgcaaccagagccaagttaccggccactaatcacagatgttcttcactccctcgtccct |
49120978 |
T |
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