View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2610_high_14 (Length: 367)
Name: NF2610_high_14
Description: NF2610
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2610_high_14 |
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| [»] scaffold0215 (1 HSPs) |
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Alignment Details
Target: scaffold0215 (Bit Score: 288; Significance: 1e-161; HSPs: 1)
Name: scaffold0215
Description:
Target: scaffold0215; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 21 - 343
Target Start/End: Original strand, 22470 - 22799
Alignment:
| Q |
21 |
aataacgtaattcaatctcaaaacgaaaaaccttctttgcctaggtaaaccactcaatccctgaagctttcgaattccaatcctcaaacatggaattcag |
120 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22470 |
aataacgtaattcaatctcaaaacgaaaaaccttctttgcccaggtgaaccactcaatccctgaagctttcgaattccaatcctcaaacatggaattcag |
22569 |
T |
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| Q |
121 |
ttcctttgaaaatctccaaccatctttcacggttcccagaaccctgaaaatcccctttct-------tcgattctaccctcgaataatctcacacctctt |
213 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||| |
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| T |
22570 |
ttccttcgaaaatctccaaccatctttcacggttcccagaaccctgaaaataccctttcttacttcttcgattctaccctcgaataatctcacacctctt |
22669 |
T |
|
| Q |
214 |
ccgaaaattctacgaatcctttgggaaatctatgctgtttcaaaatttcagagcccgcatcttgttcaaacaatctctgaaggccgttgcggcgacgacg |
313 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22670 |
ccgaaaattctacgaatcctttgggaaatctatgctgtttcaaaatttcagagcccgcatcttgttcaaacaatctctgaaggccgttgcggcgacgacg |
22769 |
T |
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| Q |
314 |
acgtttgctgtgattgacgaacgtaccgga |
343 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
22770 |
acgtttgctgtgattgacgaacgtaccgga |
22799 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 280; Significance: 1e-157; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 21 - 343
Target Start/End: Complemental strand, 18851938 - 18851609
Alignment:
| Q |
21 |
aataacgtaattcaatctcaaaacgaaaaaccttctttgcctaggtaaaccactcaatccctgaagctttcgaattccaatcctcaaacatggaattcag |
120 |
Q |
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||||| ||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18851938 |
aataaagtaattcaatctcaaaacgaaaaaccttctttgcccaggtgaaccactcaatccctgaagctttcgaattccaatcctcaaacatggaattcag |
18851839 |
T |
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| Q |
121 |
ttcctttgaaaatctccaaccatctttcacggttcccagaaccctgaaaatcccctttctt-------cgattctaccctcgaataatctcacacctctt |
213 |
Q |
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||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
18851838 |
ttcttttgaaaatctccaaccatctttcacggttcccagaaccctgaaaatcccctttcttacttcttcgattctaccctcgaataatctcacacctctt |
18851739 |
T |
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| Q |
214 |
ccgaaaattctacgaatcctttgggaaatctatgctgtttcaaaatttcagagcccgcatcttgttcaaacaatctctgaaggccgttgcggcgacgacg |
313 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18851738 |
ccgaaaattctacgaatcctttgggaaatctatgttgtttcaaaatttcagagcccgcatcttgttcaaacaatctctgaaggccgttgcggcgacgacg |
18851639 |
T |
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| Q |
314 |
acgtttgctgtgattgacgaacgtaccgga |
343 |
Q |
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||||||||||||||||||||||||| |||| |
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| T |
18851638 |
acgtttgctgtgattgacgaacgtaacgga |
18851609 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 49 - 347
Target Start/End: Original strand, 16352679 - 16352984
Alignment:
| Q |
49 |
aaccttctttgcctaggtaaaccactcaatccctgaagctttcgaattccaatcctcaaacatggaattcagttcctttgaaaatctccaaccatctttc |
148 |
Q |
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|||| |||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
16352679 |
aaccatctttgcccaggtgaaccactcaatccctgaagctttcgaattccaatcctcaaacatggaattcagttccttcgaaaatctccaaccatctttc |
16352778 |
T |
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| Q |
149 |
acggttcccagaaccctgaaaatcccctttct-------tcgattctaccctcgaataatctcacacctcttccgaaaattctacgaatcctttgggaaa |
241 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||| | || ||||||||| |||| |
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| T |
16352779 |
acggttcccagaaccctgaaaatcccctttcttccttcttcgattctaccctcgaataatctcacacctcttcccaaaatgccacaaatcctttgagaaa |
16352878 |
T |
|
| Q |
242 |
tctatgctgtttcaaaatttcagagcccgcatcttgttcaaacaatctctgaaggccgttgcggcgacgacgacgtttgctgtgattgacgaacgtaccg |
341 |
Q |
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|||| ||| |||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
16352879 |
tctacgctctttcgaaatttcagagcccgcatcttgttcaaacaatctctgaaggccgtcgcggcgacgacgacgtttgctgtgattgacgaacgtaccg |
16352978 |
T |
|
| Q |
342 |
gaccca |
347 |
Q |
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|||||| |
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| T |
16352979 |
gaccca |
16352984 |
T |
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