View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2610_high_17 (Length: 303)
Name: NF2610_high_17
Description: NF2610
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2610_high_17 |
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Alignment Details
Target: chr1 (Bit Score: 248; Significance: 1e-138; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 248; E-Value: 1e-138
Query Start/End: Original strand, 20 - 288
Target Start/End: Original strand, 32926865 - 32927141
Alignment:
| Q |
20 |
ttgtaaataattaaggaaagaaaaaaccacttaacacaaattagacaatgatgatcatccaaatgactcattagacgagtttcaaatgtatatatcaaat |
119 |
Q |
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| T |
32926865 |
ttgtaaataattaaggaaagaaaaaaccacttaacacaaattagacaatgatgatcatccaaatgactcattagacgagtttcaaatgtatatatcaaat |
32926964 |
T |
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| Q |
120 |
attcatagtccttcttttcttgcatctgtcaattttttccataacatcccaacttggcacatgactaaaaatgtcacagtaaatcaaacgcataaatacc |
219 |
Q |
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| T |
32926965 |
attcatagtccttcttttcttgcatctgtcaattttttccataacatcccaacttggcacatgactaaaaatgtcacagtaaatcaaacgcataaatacc |
32927064 |
T |
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| Q |
220 |
cattaagactttgtgtatggataaacaact--------tgtttatggtataaatacttatcatatgtagaagttctt |
288 |
Q |
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| T |
32927065 |
cattaagactttgtgtatggataaacaacttaattaaatgtttatggtataaatacttatcatatgtagaagttctt |
32927141 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 61 - 174
Target Start/End: Original strand, 32958367 - 32958479
Alignment:
| Q |
61 |
tagacaatgatgatcatccaaat-gactcattagacgagtttcaaatgtatatatcaaatattcatagtccttcttttcttgcatctgtcaattttttcc |
159 |
Q |
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||||||||||||| || |||||| | |||||||||||||||||||||||||||||||||||||||| |||||| || ||||||||||||||| ||||||| |
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| T |
32958367 |
tagacaatgatga-caaccaaatagtctcattagacgagtttcaaatgtatatatcaaatattcattgtcctttttctcttgcatctgtcaa-tttttcc |
32958464 |
T |
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| Q |
160 |
ataacatcccaactt |
174 |
Q |
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|||| |||||||||| |
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| T |
32958465 |
ataatatcccaactt |
32958479 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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