View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2610_high_32 (Length: 233)

Name: NF2610_high_32
Description: NF2610
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2610_high_32
NF2610_high_32
[»] chr5 (19 HSPs)
chr5 (8-219)||(10977103-10977314)
chr5 (119-221)||(14356208-14356310)
chr5 (50-134)||(15856653-15856738)
chr5 (42-136)||(20539252-20539347)
chr5 (45-136)||(33173865-33173958)
chr5 (50-142)||(38471409-38471503)
chr5 (50-190)||(223346-223488)
chr5 (45-147)||(1010261-1010363)
chr5 (45-147)||(8521372-8521474)
chr5 (45-115)||(30857917-30857987)
chr5 (78-142)||(14210291-14210355)
chr5 (45-142)||(32757943-32758042)
chr5 (45-142)||(22308699-22308797)
chr5 (50-111)||(2167450-2167511)
chr5 (50-111)||(5383062-5383123)
chr5 (45-122)||(9169704-9169781)
chr5 (52-89)||(9378625-9378662)
chr5 (50-111)||(40058138-40058199)
chr5 (53-117)||(22165106-22165170)
[»] chr3 (26 HSPs)
chr3 (9-211)||(5123178-5123380)
chr3 (51-186)||(53624219-53624354)
chr3 (50-131)||(43346361-43346443)
chr3 (50-134)||(21128045-21128130)
chr3 (50-162)||(45421229-45421342)
chr3 (45-164)||(20314642-20314762)
chr3 (47-134)||(48254800-48254888)
chr3 (45-165)||(20336534-20336655)
chr3 (45-142)||(21515512-21515609)
chr3 (59-134)||(21074188-21074264)
chr3 (50-140)||(3209869-3209960)
chr3 (50-139)||(48867336-48867426)
chr3 (52-140)||(35372062-35372151)
chr3 (45-136)||(10731002-10731094)
chr3 (72-140)||(52719793-52719861)
chr3 (45-116)||(46495612-46495683)
chr3 (89-134)||(47765597-47765643)
chr3 (43-116)||(7270439-7270512)
chr3 (51-135)||(12106697-12106782)
chr3 (72-140)||(41263782-41263851)
chr3 (46-111)||(53420436-53420501)
chr3 (45-122)||(55423511-55423588)
chr3 (45-132)||(18442366-18442454)
chr3 (45-132)||(19487440-19487528)
chr3 (49-125)||(35633346-35633422)
chr3 (45-140)||(40244303-40244399)
[»] chr2 (22 HSPs)
chr2 (8-221)||(9472705-9472917)
chr2 (19-114)||(1149117-1149212)
chr2 (50-207)||(15850497-15850655)
chr2 (50-142)||(35799632-35799725)
chr2 (41-112)||(42366982-42367053)
chr2 (45-142)||(2277369-2277467)
chr2 (45-142)||(28562710-28562808)
chr2 (50-142)||(8537132-8537225)
chr2 (50-134)||(26205133-26205218)
chr2 (152-216)||(28109700-28109764)
chr2 (45-142)||(34147254-34147353)
chr2 (45-112)||(18971227-18971294)
chr2 (52-142)||(34513453-34513544)
chr2 (45-127)||(7753442-7753524)
chr2 (42-111)||(14509320-14509390)
chr2 (53-134)||(29424523-29424605)
chr2 (72-140)||(1083132-1083201)
chr2 (50-111)||(10367359-10367420)
chr2 (45-114)||(21664920-21664989)
chr2 (50-111)||(25570805-25570866)
chr2 (51-111)||(12959640-12959700)
chr2 (43-115)||(17460613-17460685)
[»] chr4 (27 HSPs)
chr4 (9-221)||(668468-668680)
chr4 (45-142)||(13533162-13533259)
chr4 (50-140)||(34438526-34438616)
chr4 (50-134)||(56296313-56296398)
chr4 (45-141)||(27847795-27847891)
chr4 (50-221)||(43419200-43419371)
chr4 (45-142)||(40723345-40723443)
chr4 (60-134)||(26393038-26393113)
chr4 (60-134)||(56000417-56000492)
chr4 (45-142)||(6348272-6348370)
chr4 (50-190)||(38555130-38555272)
chr4 (60-134)||(3533519-3533594)
chr4 (46-136)||(4714139-4714230)
chr4 (45-142)||(2162727-2162825)
chr4 (56-138)||(33231519-33231601)
chr4 (86-191)||(53401336-53401442)
chr4 (62-142)||(1794548-1794629)
chr4 (46-134)||(29663758-29663847)
chr4 (88-141)||(52633598-52633651)
chr4 (19-83)||(36614185-36614249)
chr4 (88-134)||(306735-306780)
chr4 (50-131)||(17494247-17494329)
chr4 (45-142)||(37884178-37884276)
chr4 (72-140)||(2311098-2311167)
chr4 (50-111)||(11114915-11114976)
chr4 (45-122)||(28657039-28657116)
chr4 (86-138)||(50547066-50547118)
[»] chr6 (14 HSPs)
chr6 (19-114)||(136719-136814)
chr6 (45-142)||(7312184-7312281)
chr6 (25-114)||(30231576-30231665)
chr6 (45-136)||(24757000-24757092)
chr6 (43-140)||(29380306-29380404)
chr6 (45-142)||(32505786-32505884)
chr6 (43-140)||(23397257-23397355)
chr6 (50-111)||(293575-293636)
chr6 (50-111)||(14328709-14328770)
chr6 (50-111)||(14421719-14421780)
chr6 (42-127)||(9927716-9927802)
chr6 (50-136)||(27082081-27082168)
chr6 (45-114)||(15728848-15728917)
chr6 (50-142)||(22298724-22298816)
[»] chr7 (12 HSPs)
chr7 (45-142)||(9662138-9662235)
chr7 (19-114)||(26135733-26135828)
chr7 (50-207)||(35484148-35484306)
chr7 (46-111)||(7354623-7354688)
chr7 (50-141)||(28325192-28325284)
chr7 (50-200)||(26406245-26406395)
chr7 (45-134)||(16755989-16756079)
chr7 (45-140)||(11501297-11501393)
chr7 (60-134)||(45719745-45719820)
chr7 (50-135)||(25154846-25154932)
chr7 (19-135)||(3332064-3332181)
chr7 (50-111)||(46458648-46458709)
[»] chr8 (25 HSPs)
chr8 (45-140)||(32693947-32694043)
chr8 (60-134)||(24069357-24069432)
chr8 (50-134)||(13513540-13513625)
chr8 (50-134)||(13603073-13603158)
chr8 (50-134)||(34617106-34617191)
chr8 (60-134)||(7770809-7770884)
chr8 (60-134)||(7796719-7796794)
chr8 (60-134)||(7816000-7816075)
chr8 (60-134)||(39515329-39515404)
chr8 (45-140)||(42100009-42100105)
chr8 (51-142)||(38696908-38696999)
chr8 (72-202)||(44076202-44076332)
chr8 (45-147)||(42877736-42877838)
chr8 (50-111)||(13366985-13367046)
chr8 (50-115)||(39220799-39220864)
chr8 (50-142)||(44606259-44606352)
chr8 (87-142)||(6397942-6397998)
chr8 (45-116)||(42872117-42872188)
chr8 (72-131)||(45395112-45395171)
chr8 (43-140)||(32797256-32797354)
chr8 (46-134)||(14840807-14840896)
chr8 (74-134)||(38696455-38696516)
chr8 (60-140)||(45279812-45279893)
chr8 (19-79)||(28403543-28403603)
chr8 (55-111)||(36070303-36070359)
[»] chr1 (24 HSPs)
chr1 (50-142)||(19466109-19466201)
chr1 (51-142)||(51300160-51300252)
chr1 (50-141)||(36509931-36510022)
chr1 (45-111)||(16757456-16757522)
chr1 (45-142)||(48096932-48097030)
chr1 (45-147)||(15746662-15746764)
chr1 (60-140)||(16963966-16964047)
chr1 (58-142)||(30535570-30535654)
chr1 (51-115)||(38965195-38965259)
chr1 (45-136)||(41873877-41873969)
chr1 (46-127)||(34258627-34258709)
chr1 (72-136)||(7161229-7161294)
chr1 (49-110)||(47762015-47762076)
chr1 (43-142)||(51042240-51042343)
chr1 (50-111)||(51726779-51726840)
chr1 (42-142)||(835390-835489)
chr1 (59-142)||(21507197-21507280)
chr1 (44-113)||(9226145-9226214)
chr1 (50-134)||(9633895-9633980)
chr1 (50-111)||(21277114-21277175)
chr1 (51-111)||(8092719-8092779)
chr1 (50-142)||(13642461-13642553)
chr1 (106-162)||(15743416-15743471)
chr1 (45-141)||(46467264-46467360)
[»] scaffold2071 (1 HSPs)
scaffold2071 (51-142)||(581-673)
[»] scaffold0178 (1 HSPs)
scaffold0178 (50-142)||(1331-1422)
[»] scaffold0148 (1 HSPs)
scaffold0148 (46-142)||(14820-14916)
[»] scaffold0034 (1 HSPs)
scaffold0034 (46-140)||(109648-109743)
[»] scaffold0031 (1 HSPs)
scaffold0031 (62-135)||(125137-125212)
[»] scaffold0018 (2 HSPs)
scaffold0018 (45-136)||(151966-152058)
scaffold0018 (44-140)||(151452-151549)
[»] scaffold0128 (1 HSPs)
scaffold0128 (72-142)||(22125-22196)
[»] scaffold0122 (1 HSPs)
scaffold0122 (50-111)||(16065-16126)
[»] scaffold0201 (1 HSPs)
scaffold0201 (45-136)||(21245-21337)
[»] scaffold0077 (1 HSPs)
scaffold0077 (45-140)||(52709-52805)


Alignment Details
Target: chr5 (Bit Score: 144; Significance: 7e-76; HSPs: 19)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 144; E-Value: 7e-76
Query Start/End: Original strand, 8 - 219
Target Start/End: Original strand, 10977103 - 10977314
Alignment:
Q  8 tcaattatacatccgtcagtcaaattggtcatgttccgttaattttaacctcaaatgtataagatggaccaacattataagtggtctaccatagacctta 107  Q
    |||||| ||| |||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||| || ||||||||||||||||| ||    
T  10977103 tcaattttacgtccgtcagtcaaattggtcatgttccgttaattttaacttcaaatgtctaagatggaccaacattgtatgtggtctaccatagaccata 10977202  T
Q  108 ttaatttttaaattttaaccatttgatctatttttgcaaacaagaaccgttggatcacagatgtctattgtatcgtacggtgaaccatcaacaaccaatt 207  Q
    ||||||||| ||||||| |||||||||||||||||| ||||| |||||||||||||| | |||||||||||||| |||| ||||||||||||||| ||||    
T  10977203 ttaattttttaattttatccatttgatctatttttgaaaacaggaaccgttggatcatatatgtctattgtatcatacgatgaaccatcaacaactaatt 10977302  T
Q  208 attttctccttt 219  Q
    |||||| |||||    
T  10977303 attttccccttt 10977314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 119 - 221
Target Start/End: Complemental strand, 14356310 - 14356208
Alignment:
Q  119 attttaaccatttgatctatttttgcaaacaagaaccgttggatcacagatgtctattgtatcgtacggtgaaccatcaacaaccaattattttctcctt 218  Q
    ||||||||||||||||||||||||  ||||||| | ||||| |||||| | |||||||||||  || |||||| ||||||||||  ||||||||||||||    
T  14356310 attttaaccatttgatctatttttcaaaacaaggatcgttgtatcacaaaagtctattgtattatatggtgaatcatcaacaacttattattttctcctt 14356211  T
Q  219 tct 221  Q
    |||    
T  14356210 tct 14356208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 50 - 134
Target Start/End: Original strand, 15856653 - 15856738
Alignment:
Q  50 ttttaacctcaaatgtataagatggaccaacattataagtggtctaccatagaccttattaa-tttttaaattttaaccatttgat 134  Q
    ||||||||  |||||| |||| ||||||||||||||| |||||| ||||||||||||| ||| ||||| |||||||| ||||||||    
T  15856653 ttttaaccctaaatgtctaaggtggaccaacattataggtggtccaccatagaccttactaagttttttaattttaatcatttgat 15856738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 42 - 136
Target Start/End: Complemental strand, 20539347 - 20539252
Alignment:
Q  42 tccgttaattttaacctcaaatgtataagatggaccaacattataagtggtctaccatagaccttattaat-ttttaaattttaaccatttgatct 136  Q
    |||||||| ||||||  ||||| |||||| |||||||| ||| || |||||||| |||||||||||||||| |||| ||||| |||| ||||||||    
T  20539347 tccgttaagtttaacaccaaatatataaggtggaccaatattgtaggtggtctatcatagaccttattaatttttttaatttaaaccgtttgatct 20539252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 45 - 136
Target Start/End: Complemental strand, 33173958 - 33173865
Alignment:
Q  45 gttaattttaacctcaaatgtataagatggaccaacattataagtggtctaccatagaccttattaa--tttttaaattttaaccatttgatct 136  Q
    ||||| ||||||| ||||||| || | ||||||||| |||  ||||||||||||||||| | |||||  |||||||||||||||| ||||||||    
T  33173958 gttaagtttaaccccaaatgtctatggtggaccaaccttaagagtggtctaccatagacttcattaatttttttaaattttaaccgtttgatct 33173865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 50 - 142
Target Start/End: Original strand, 38471409 - 38471503
Alignment:
Q  50 ttttaacctcaaatgtataagatggaccaacattataagtggtctaccatagaccttattaat--ttttaaattttaaccatttgatctattttt 142  Q
    ||||||||| |||||| |||| || |||||| ||||| |||||||||||||||| |||||| |  ||||  ||||||||| |||||||| |||||    
T  38471409 ttttaaccttaaatgtttaaggtgaaccaactttataggtggtctaccatagactttattatttattttttattttaaccgtttgatcttttttt 38471503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 50 - 190
Target Start/End: Original strand, 223346 - 223488
Alignment:
Q  50 ttttaacctcaaatgtataagatggaccaacattataagtggtctaccatagaccttatt-aatttttaaattttaaccatttgatctatttt-tgcaaa 147  Q
    |||||| || |||||| |||| || |||||| || || |||||||||||||||| ||||| ||||||| ||||| |||| |||||||| |||| |  |||    
T  223346 ttttaatcttaaatgtctaaggtgaaccaactttgtaggtggtctaccatagactttattaaattttttaatttaaaccgtttgatcttttttatttaaa 223445  T
Q  148 caagaaccgttggatcacagatgtctattgtatcgtacggtga 190  Q
      |||||| |||||| ||  ||||||||| |||| ||||||||    
T  223446 gtagaacctttggattactcatgtctattttatcttacggtga 223488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 45 - 147
Target Start/End: Complemental strand, 1010363 - 1010261
Alignment:
Q  45 gttaattttaacctcaaatgtataagatggaccaacattataagtggtctaccatagaccttattaatttttaaattttaaccatttgatctatttttgc 144  Q
    ||||| ||||||| ||||||| || | ||||||||| |||  |||||||  ||||||| | |||||||| || ||||| |||| |||||||||||||| |    
T  1010363 gttaactttaaccccaaatgtgtatggtggaccaaccttaagagtggtccgccatagatcctattaattatttaatttcaaccctttgatctatttttcc 1010264  T
Q  145 aaa 147  Q
    |||    
T  1010263 aaa 1010261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 45 - 147
Target Start/End: Original strand, 8521372 - 8521474
Alignment:
Q  45 gttaattttaacctcaaatgtataagatggaccaacattataagtggtctaccatagaccttattaatttttaaattttaaccatttgatctatttttgc 144  Q
    ||||| ||||||| ||||||| || | ||||||||| |||  | ||||| |||||||| | |||||||| || ||||| |||| |||||||||||||| |    
T  8521372 gttaactttaaccccaaatgtgtatggtggaccaaccttaagaatggtccaccatagatcctattaattatttaatttcaaccctttgatctattttttc 8521471  T
Q  145 aaa 147  Q
    |||    
T  8521472 aaa 8521474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 45 - 115
Target Start/End: Original strand, 30857917 - 30857987
Alignment:
Q  45 gttaattttaacctcaaatgtataagatggaccaacattataagtggtctaccatagaccttattaatttt 115  Q
    ||||| |||||| | |||||| || ||||||||||| ||| |||||||||| || ||||||||||||||||    
T  30857917 gttaactttaactttaaatgtctatgatggaccaaccttaaaagtggtctatcagagaccttattaatttt 30857987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 78 - 142
Target Start/End: Original strand, 14210291 - 14210355
Alignment:
Q  78 aacattataagtggtctaccatagaccttattaatttttaaattttaaccatttgatctattttt 142  Q
    |||||||||||||||| | ||||||||| ||||| ||||  ||||||||| |||||||| |||||    
T  14210291 aacattataagtggtccatcatagacctcattaaattttttattttaaccttttgatcttttttt 14210355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 45 - 142
Target Start/End: Original strand, 32757943 - 32758042
Alignment:
Q  45 gttaattttaacctcaaatgtataagatggaccaacattataagtggtctaccatagaccttattaa--tttttaaattttaaccatttgatctattttt 142  Q
    ||||| ||||||| ||||||| || | |||||||||||  ||  | ||| |||||||||||||||||  ||||| |||||||||| |||||||| |||||    
T  32757943 gttaactttaaccccaaatgtctatggtggaccaacatggtagatagtccaccatagaccttattaatttttttcaattttaaccctttgatcttttttt 32758042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 45 - 142
Target Start/End: Complemental strand, 22308797 - 22308699
Alignment:
Q  45 gttaattttaacctcaaatgtataagatggaccaacattataagtggtctaccatagaccttattaa-tttttaaattttaaccatttgatctattttt 142  Q
    ||||| ||||||| ||||||| || | |||||| || |||  ||||||| ||||||||| ||||||| ||||| ||| | ||||||||||||| |||||    
T  22308797 gttaagtttaaccccaaatgtctatggtggacctaccttaagagtggtccaccatagacattattaaattttttaatgtaaaccatttgatctgttttt 22308699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 50 - 111
Target Start/End: Complemental strand, 2167511 - 2167450
Alignment:
Q  50 ttttaacctcaaatgtataagatggaccaacattataagtggtctaccatagaccttattaa 111  Q
    ||||||||| |||||| |||| || |||||| |||||  ||||| |||||||||||||||||    
T  2167511 ttttaaccttaaatgtctaaggtgaaccaactttatagatggtccaccatagaccttattaa 2167450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 50 - 111
Target Start/End: Original strand, 5383062 - 5383123
Alignment:
Q  50 ttttaacctcaaatgtataagatggaccaacattataagtggtctaccatagaccttattaa 111  Q
    ||||||||| |||||| |||| || | |||| ||||| |||||| |||||||||||||||||    
T  5383062 ttttaaccttaaatgtctaaggtgaatcaactttataggtggtccaccatagaccttattaa 5383123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 45 - 122
Target Start/End: Original strand, 9169704 - 9169781
Alignment:
Q  45 gttaattttaacctcaaatgtataagatggaccaacattataagtggtctaccatagaccttattaatttttaaattt 122  Q
    ||||| ||||||| ||||||| ||   |||||||| ||||||  ||||| | |||||||| |||||||||||||||||    
T  9169704 gttaactttaaccccaaatgtctatagtggaccaatattatagatggtccatcatagaccgtattaatttttaaattt 9169781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 52 - 89
Target Start/End: Complemental strand, 9378662 - 9378625
Alignment:
Q  52 ttaacctcaaatgtataagatggaccaacattataagt 89  Q
    |||||||||||||| |||| ||||||||||||||||||    
T  9378662 ttaacctcaaatgtctaaggtggaccaacattataagt 9378625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 50 - 111
Target Start/End: Original strand, 40058138 - 40058199
Alignment:
Q  50 ttttaacctcaaatgtataagatggaccaacattataagtggtctaccatagaccttattaa 111  Q
    |||||| || |||||| |||| || |||||| |||||||| ||| |||||||||||||||||    
T  40058138 ttttaatcttaaatgtctaaggtgaaccaactttataagtagtccaccatagaccttattaa 40058199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 53 - 117
Target Start/End: Original strand, 22165106 - 22165170
Alignment:
Q  53 taacctcaaatgtataagatggaccaacattataagtggtctaccatagaccttattaattttta 117  Q
    ||||||||||||| |  | ||||||||||||||| |||||| |||| |||| | |||||||||||    
T  22165106 taacctcaaatgtctttggtggaccaacattataggtggtccaccaaagacgtcattaattttta 22165170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 127; Significance: 1e-65; HSPs: 26)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 9 - 211
Target Start/End: Complemental strand, 5123380 - 5123178
Alignment:
Q  9 caattatacatccgtcagtcaaattggtcatgttccgttaattttaacctcaaatgtataagatggaccaacattataagtggtctaccatagaccttat 108  Q
    ||||||||| | ||| ||| ||||||||||||||| ||||||||||||||||||||| ||||||||||||||||| || |||||||||||||||||||||    
T  5123380 caattatacgttcgttagttaaattggtcatgttctgttaattttaacctcaaatgtttaagatggaccaacattgtatgtggtctaccatagaccttat 5123281  T
Q  109 taatttttaaattttaaccatttgatctatttttgcaaacaagaaccgttggatcacagatgtctattgtatcgtacggtgaaccatcaacaaccaatta 208  Q
    |||||||| |||||||||||||||||||||||||  | ||| ||||||||||||| |||| |||||||||||| | | |||||||||||||||| |||||    
T  5123280 taattttttaattttaaccatttgatctattttttaacacatgaaccgttggatcgcagaggtctattgtatcattcagtgaaccatcaacaactaatta 5123181  T
Q  209 ttt 211  Q
    |||    
T  5123180 ttt 5123178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 51 - 186
Target Start/End: Complemental strand, 53624354 - 53624219
Alignment:
Q  51 tttaacctcaaatgtataagatggaccaacattataagtggtctaccatagaccttattaatttttaaattttaaccatttgatctatttttgcaaacaa 150  Q
    ||||||| |||||||||| | |||||||||||||||  | ||| |||||||||||||||||||||| |||||||||| |||||||| |||||   ||  |    
T  53624354 tttaaccccaaatgtatatggtggaccaacattatagatagtccaccatagaccttattaatttttcaattttaaccttttgatctttttttaagaaaga 53624255  T
Q  151 gaaccgttggatcacagatgtctattgtatcgtacg 186  Q
    |||||||||||| |||  |||||||| |||| ||||    
T  53624254 gaaccgttggattacacgtgtctattttatcttacg 53624219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 50 - 131
Target Start/End: Complemental strand, 43346443 - 43346361
Alignment:
Q  50 ttttaacctcaaatgtataagatggaccaacattataagtggtctaccatagacctta-ttaatttttaaattttaaccattt 131  Q
    ||||||||  |||||| |||| ||||||||||||||| |||||| ||||||||||||| | ||||||| ||||||||||||||    
T  43346443 ttttaaccctaaatgtctaaggtggaccaacattataggtggtccaccatagaccttactaaattttttaattttaaccattt 43346361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 50 - 134
Target Start/End: Original strand, 21128045 - 21128130
Alignment:
Q  50 ttttaacctcaaatgtataagatggaccaacattataagtggtctaccatagaccttattaa-tttttaaattttaaccatttgat 134  Q
    ||||||||  |||||| |||| ||||||||||||||| |||||| |||||||||||||  || ||||| |||||||||||||||||    
T  21128045 ttttaaccctaaatgtctaaggtggaccaacattataggtggtccaccatagaccttacaaagttttttaattttaaccatttgat 21128130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 50 - 162
Target Start/End: Original strand, 45421229 - 45421342
Alignment:
Q  50 ttttaacctcaaatgtataagatggaccaacattataagtggtctaccatagaccttattaat-ttttaaattttaaccatttgatctatttttgcaaac 148  Q
    ||||||||  |||||| ||||||| |||||||||| | |||||| |||||||||||||| ||| |||| ||||| ||||| ||||||| |||||| ||      
T  45421229 ttttaaccataaatgtctaagatgaaccaacattagaggtggtccaccatagaccttataaatgttttcaatttaaaccacttgatctttttttgaaata 45421328  T
Q  149 aagaaccgttggat 162  Q
     |||||||||||||    
T  45421329 gagaaccgttggat 45421342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 45 - 164
Target Start/End: Complemental strand, 20314762 - 20314642
Alignment:
Q  45 gttaattttaacctcaaatgtataagatggaccaacattataagtggtctaccatagaccttattaattt-ttaaattttaaccatttgatctatttttg 143  Q
    ||||| ||||||  ||||||| || | | |||||||||||||  | ||| |||||||||||||||||||| || ||||| ||||||||||| |||||||     
T  20314762 gttaagtttaactccaaatgtctatgttagaccaacattatagatagtccaccatagaccttattaatttatttaatttaaaccatttgatttatttttt 20314663  T
Q  144 caaacaagaaccgttggatca 164  Q
    ||||  || ||||||||||||    
T  20314662 caaaagaggaccgttggatca 20314642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 47 - 134
Target Start/End: Complemental strand, 48254888 - 48254800
Alignment:
Q  47 taattttaacctcaaatgtataagatggaccaacattataagtggtctaccatagaccttattaa-tttttaaattttaaccatttgat 134  Q
    |||||||||| | |||||| |||| ||||||||||||||| |||||| |||||| |||||| ||| ||||| ||||||||||| |||||    
T  48254888 taattttaacattaaatgtctaaggtggaccaacattataggtggtccaccataaaccttactaagttttttaattttaaccacttgat 48254800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 45 - 165
Target Start/End: Complemental strand, 20336655 - 20336534
Alignment:
Q  45 gttaattttaacctcaaatgtataagatggaccaacattataagtggtctaccatagaccttattaattt-ttaaattttaaccatttgatctatttttg 143  Q
    ||||| ||||||  ||||||| || | |||||||||||||||  | ||| |||||||||||||||||||| || ||||| |||||||  || |||||||     
T  20336655 gttaagtttaactccaaatgtctatgttggaccaacattatagatagtccaccatagaccttattaatttatttaatttaaaccattcaatttatttttt 20336556  T
Q  144 caaacaagaaccgttggatcac 165  Q
     |||  ||||||||||||||||    
T  20336555 taaaagagaaccgttggatcac 20336534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 45 - 142
Target Start/End: Complemental strand, 21515609 - 21515512
Alignment:
Q  45 gttaattttaacctcaaatgtataagatggaccaacattataagtggtctaccatagaccttattaatttttaaattttaaccatttgatctattttt 142  Q
    ||||| ||||||  ||||||||| || |||| ||| ||| || |||||| |||||| ||||||||||||||| ||||  | |||||||||||||||||    
T  21515609 gttaactttaactccaaatgtattaggtggatcaatattgtaggtggtccaccatataccttattaattttttaattccagccatttgatctattttt 21515512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 59 - 134
Target Start/End: Complemental strand, 21074264 - 21074188
Alignment:
Q  59 caaatgtataagatggaccaacattataagtggtctaccatagaccttattaat-ttttaaattttaaccatttgat 134  Q
    |||||||||| | |||||||||||||||  | ||| |||||||||||||||||| |||| |||||||||| ||||||    
T  21074264 caaatgtatatggtggaccaacattatagatagtccaccatagaccttattaattttttcaattttaaccctttgat 21074188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 50 - 140
Target Start/End: Complemental strand, 3209960 - 3209869
Alignment:
Q  50 ttttaacctcaaatgtataagatggaccaacattataagtggtctaccatagaccttattaatttt-taaattttaaccatttgatctattt 140  Q
    ||||||| ||||||||||| | ||||||||| ||| || | ||| | | || |||||||||||||| | |||||||||||||||||||||||    
T  3209960 ttttaacttcaaatgtatatggtggaccaaccttaaaaatagtccatcgtaaaccttattaattttgttaattttaaccatttgatctattt 3209869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 50 - 139
Target Start/End: Complemental strand, 48867426 - 48867336
Alignment:
Q  50 ttttaacctcaaatgtataagatggaccaacattataagtggtctaccatagaccttatt-aatttttaaattttaaccatttgatctatt 139  Q
    ||||||||| |||||| |||| || |||||| || || |||||||||||||||| ||||| || |||  |||||||||||||| |||||||    
T  48867426 ttttaaccttaaatgtctaaggtgaaccaactttgtaggtggtctaccatagactttattaaaatttgtaattttaaccattttatctatt 48867336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 52 - 140
Target Start/End: Complemental strand, 35372151 - 35372062
Alignment:
Q  52 ttaacctcaaatgtataagatggaccaacattataagtggtctaccatagaccttattaatttt-taaattttaaccatttgatctattt 140  Q
    ||||| |||||||| || | ||||||||  ||| |||||||| | | ||||||||||||||||| | ||||||||||||| |||||||||    
T  35372151 ttaacttcaaatgtctatgttggaccaattttaaaagtggtccatcgtagaccttattaattttgttaattttaaccattcgatctattt 35372062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 45 - 136
Target Start/End: Original strand, 10731002 - 10731094
Alignment:
Q  45 gttaattttaacctcaaatgtataagatggaccaacattataagtggtctaccatagaccttattaatttt-taaattttaaccatttgatct 136  Q
    ||||| |||||| |||||||| || | || |||||| ||| |||||||||| |||| |||||||||||||| | |||||||| |||| |||||    
T  10731002 gttaactttaacttcaaatgtctatggtgaaccaaccttaaaagtggtctatcatataccttattaattttgttaattttaatcattcgatct 10731094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 72 - 140
Target Start/End: Complemental strand, 52719861 - 52719793
Alignment:
Q  72 tggaccaacattataagtggtctaccatagaccttattaatttttaaattttaaccatttgatctattt 140  Q
    ||||||||||||||| |||||| |||||| |||| ||||  |||| ||| ||||||||||||| |||||    
T  52719861 tggaccaacattatatgtggtccaccataaacctcattagctttttaatcttaaccatttgatatattt 52719793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 45 - 116
Target Start/End: Original strand, 46495612 - 46495683
Alignment:
Q  45 gttaattttaacctcaaatgtataagatggaccaacattataagtggtctaccatagaccttattaattttt 116  Q
    ||||| ||||| | ||||||||| || || ||||||||| || |||||| | ||||||||||||||||||||    
T  46495612 gttaactttaaacccaaatgtattaggtgaaccaacattgtaggtggtccatcatagaccttattaattttt 46495683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 89 - 134
Target Start/End: Original strand, 47765597 - 47765643
Alignment:
Q  89 tggtctaccatagaccttatt-aatttttaaattttaaccatttgat 134  Q
    ||||| ||||||||||||||| |||||||||||||||||| ||||||    
T  47765597 tggtccaccatagaccttattgaatttttaaattttaaccttttgat 47765643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 43 - 116
Target Start/End: Original strand, 7270439 - 7270512
Alignment:
Q  43 ccgttaattttaacctcaaatgtataagatggaccaacattataagtggtctaccatagaccttattaattttt 116  Q
    ||||||| ||||||||||||||| |    ||||||||| |||  |||||||||||||||| |||||||| ||||    
T  7270439 ccgttaactttaacctcaaatgtctgtagtggaccaaccttaagagtggtctaccatagatcttattaactttt 7270512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 51 - 135
Target Start/End: Original strand, 12106697 - 12106782
Alignment:
Q  51 tttaacctcaaatgtataagatggaccaacattataagtggtctaccatagaccttattaattt-ttaaattttaaccatttgatc 135  Q
    |||||||| |||||| ||  ||||||||  ||||||| ||||| ||| |||||||||||||||| || ||||||| || |||||||    
T  12106697 tttaaccttaaatgtctattatggaccagtattataaatggtccaccgtagaccttattaatttattcaattttatccctttgatc 12106782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 72 - 140
Target Start/End: Original strand, 41263782 - 41263851
Alignment:
Q  72 tggaccaacattataagtggtctaccatagaccttattaatttt-taaattttaaccatttgatctattt 140  Q
    |||| |||| ||| ||||||||||   ||||||||||||||||| | ||||||||||||| |||||||||    
T  41263782 tggatcaaccttaaaagtggtctattctagaccttattaattttgttaattttaaccattcgatctattt 41263851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 46 - 111
Target Start/End: Original strand, 53420436 - 53420501
Alignment:
Q  46 ttaattttaacctcaaatgtataagatggaccaacattataagtggtctaccatagaccttattaa 111  Q
    |||| ||||||| ||||||| || | ||||||||| ||| ||||| || |||||||||||||||||    
T  53420436 ttaagtttaaccacaaatgtctatggtggaccaactttaaaagtgatccaccatagaccttattaa 53420501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 45 - 122
Target Start/End: Original strand, 55423511 - 55423588
Alignment:
Q  45 gttaattttaacctcaaatgtataagatggaccaacattataagtggtctaccatagaccttattaatttttaaattt 122  Q
    ||||| || |||| ||||||| | || ||||||||| || || |||||| ||| |||||||||||||||||| |||||    
T  55423511 gttaacttcaaccccaaatgtcttaggtggaccaaccttgtaggtggtccaccgtagaccttattaattttttaattt 55423588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 45 - 132
Target Start/End: Original strand, 18442366 - 18442454
Alignment:
Q  45 gttaattttaacctcaaatgtataagatggaccaacattataagtggtctaccatagaccttattaa-tttttaaattttaaccatttg 132  Q
    ||||| ||||||| ||||||| || | ||||||||||||||   | ||| ||||||||||||||||| || || |||||||||| ||||    
T  18442366 gttaagtttaaccccaaatgtctatggtggaccaacattatcgatagtccaccatagaccttattaacttcttcaattttaaccctttg 18442454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 45 - 132
Target Start/End: Original strand, 19487440 - 19487528
Alignment:
Q  45 gttaattttaacctcaaatgtataagatggaccaacattataagtggtctaccatagaccttattaa-tttttaaattttaaccatttg 132  Q
    ||||| ||||||| ||||||| || | ||||||||||||||   | ||| ||||||||||||||||| || || |||||||||| ||||    
T  19487440 gttaagtttaaccccaaatgtctatggtggaccaacattatcgatagtccaccatagaccttattaacttcttcaattttaaccctttg 19487528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 49 - 125
Target Start/End: Original strand, 35633346 - 35633422
Alignment:
Q  49 attttaacctcaaatgtataagatggaccaacattataagtggtctaccatagaccttattaatttttaaattttaa 125  Q
    |||||||||  |||||| |||| || | |||||||  | ||||||||||||||||||  | ||||||||||||||||    
T  35633346 attttaaccataaatgtctaaggtgtaacaacattgcaggtggtctaccatagacctattaaatttttaaattttaa 35633422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 45 - 140
Target Start/End: Original strand, 40244303 - 40244399
Alignment:
Q  45 gttaattttaacctcaaatgtataagatggaccaacattataagtggtctaccatagaccttattaatttt-taaattttaaccatttgatctattt 140  Q
    ||||| |||||| |||| ||| || | ||||||||  ||| |||||||| | | ||||||||||||||||| | |||||||||  ||||||||||||    
T  40244303 gttaactttaacttcaagtgtctatggtggaccaaacttaaaagtggtccatcgtagaccttattaattttgttaattttaactctttgatctattt 40244399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 122; Significance: 1e-62; HSPs: 22)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 8 - 221
Target Start/End: Original strand, 9472705 - 9472917
Alignment:
Q  8 tcaattatacatccgtcagtcaaattggtcatgttccgttaattttaacctcaaatgtataagatggaccaacattataagtggtctaccatagacctta 107  Q
    |||||||||| | ||||||||||||||||| ||||||||||||||||||  ||||| | ||||||||||||||||| || ||||||||||||||||| ||    
T  9472705 tcaattatacgttcgtcagtcaaattggtcctgttccgttaattttaactccaaatatctaagatggaccaacattgtatgtggtctaccatagaccata 9472804  T
Q  108 ttaatttttaaattttaaccatttgatctatttttgcaaacaagaaccgttggatcacagatgtctattgtatcgtacggtgaaccatcaacaaccaatt 207  Q
    ||||||||| ||||||| |||||||||||||||||| ||||| ||||| || ||||| | |||||||||||||| |||| ||||||||||||||| ||||    
T  9472805 ttaattttttaattttatccatttgatctatttttgaaaacaggaaccatttgatcatatatgtctattgtatc-tacgatgaaccatcaacaactaatt 9472903  T
Q  208 attttctcctttct 221  Q
    |||||| |||||||    
T  9472904 attttcccctttct 9472917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 19 - 114
Target Start/End: Complemental strand, 1149212 - 1149117
Alignment:
Q  19 tccgtcagtcaaattggtcatgttccgttaattttaacctcaaatgtataagatggaccaacattataagtggtctaccatagaccttattaattt 114  Q
    ||||| ||||||||| ||| | |||||||||||||||| |||||| | ||| ||||||| ||||  ||| ||||| ||||||||||||||||||||    
T  1149212 tccgttagtcaaattagtcttattccgttaattttaacatcaaatatctaatatggaccgacatggtaaatggtccaccatagaccttattaattt 1149117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 50 - 207
Target Start/End: Complemental strand, 15850655 - 15850497
Alignment:
Q  50 ttttaacctcaaatgtataagatggaccaacattataagtggtctaccatagaccttattaatttttaaattttaaccatttgatctatt-tttgcaaac 148  Q
    ||||||||  |||||| |||| || |||||||||||| |||||| |||||||| |||| ||  |||| |||||||||| |||||||| || |||  |||     
T  15850655 ttttaaccctaaatgtctaaggtgaaccaacattataggtggtccaccatagatcttaatagatttttaattttaaccctttgatcttttgtttataaat 15850556  T
Q  149 aagaaccgttggatcacagatgtctattgtatcgtacggtgaaccatcaacaaccaatt 207  Q
     ||||| ||| ||||| | ||||||||||||| |||  |||||||  ||||||||||||    
T  15850555 gagaacagttagatcatacatgtctattgtattgtatagtgaaccgccaacaaccaatt 15850497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 50 - 142
Target Start/End: Original strand, 35799632 - 35799725
Alignment:
Q  50 ttttaacctcaaatgtataagatggaccaacattataagtggtctaccatagaccttattaattttta-aattttaaccatttgatctattttt 142  Q
    ||||||||| |||||| |||| || | |||| |||||||||||||||||||||| ||||||| | ||| |||||||||| |||||||| |||||    
T  35799632 ttttaaccttaaatgtctaaggtgaatcaactttataagtggtctaccatagactttattaaatgttataattttaaccgtttgatcttttttt 35799725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 41 - 112
Target Start/End: Original strand, 42366982 - 42367053
Alignment:
Q  41 ttccgttaattttaacctcaaatgtataagatggaccaacattataagtggtctaccatagaccttattaat 112  Q
    ||||||||||| ||||| | ||||| |||||||||||| ||||  | ||||||||| |||||||||||||||    
T  42366982 ttccgttaattctaacccctaatgtgtaagatggaccatcattgaaggtggtctacgatagaccttattaat 42367053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 45 - 142
Target Start/End: Complemental strand, 2277467 - 2277369
Alignment:
Q  45 gttaattttaacctcaaatgtataagatggaccaacattataagtggtctaccatagaccttattaat-ttttaaattttaaccatttgatctattttt 142  Q
    ||||| ||||||| ||||||| || | |||||||||||  ||  | ||| |||||||||||||||||| |||| |||||||||| |||||||| |||||    
T  2277467 gttaactttaaccccaaatgtctatggtggaccaacatggtagatagtccaccatagaccttattaattttttcaattttaaccctttgatcttttttt 2277369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 45 - 142
Target Start/End: Complemental strand, 28562808 - 28562710
Alignment:
Q  45 gttaattttaacctcaaatgtataagatggaccaacattataagtggtctaccatagaccttatt-aatttttaaattttaaccatttgatctattttt 142  Q
    ||||| ||||| | ||||| |||| | |||||||||||||||  | ||| ||||||||||||||| ||||||  |||||||||| |||||||| |||||    
T  28562808 gttaagtttaatcccaaatatatatggtggaccaacattatagatagtccaccatagaccttattaaattttccaattttaaccctttgatcttttttt 28562710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 50 - 142
Target Start/End: Original strand, 8537132 - 8537225
Alignment:
Q  50 ttttaacctcaaatgtataagatggaccaacattataagtggtctaccatagaccttattaattt-ttaaattttaaccatttgatctattttt 142  Q
    ||||||||| |||||| ||||||| |||||| || ||||||||  ||||||||| |||||||    || ||||||||||||||||||| |||||    
T  8537132 ttttaaccttaaatgtctaagatgtaccaactttttaagtggttcaccatagactttattaaaaaatttaattttaaccatttgatcttttttt 8537225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 50 - 134
Target Start/End: Original strand, 26205133 - 26205218
Alignment:
Q  50 ttttaacctcaaatgtataagatggaccaacattataagtggtctaccatagaccttattaa-tttttaaattttaaccatttgat 134  Q
    ||||||| |||||||| |||| || ||||   ||| |||||||| ||||||  ||||||||| |||||||||||||||||||||||    
T  26205133 ttttaacatcaaatgtctaaggtgaaccatacttaaaagtggtccaccatatgccttattaattttttaaattttaaccatttgat 26205218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 152 - 216
Target Start/End: Complemental strand, 28109764 - 28109700
Alignment:
Q  152 aaccgttggatcacagatgtctattgtatcgtacggtgaaccatcaacaaccaattattttctcc 216  Q
    ||||||||||||| | |||||| ||||||| |||||||||| ||||||| | |||| ||||||||    
T  28109764 aaccgttggatcatatatgtctgttgtatcatacggtgaacaatcaacacctaatttttttctcc 28109700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 45 - 142
Target Start/End: Original strand, 34147254 - 34147353
Alignment:
Q  45 gttaattttaacctcaaatgtataagatggaccaacattataagtggtctaccatagaccttattaa--tttttaaattttaaccatttgatctattttt 142  Q
    ||||| ||||||| ||||||| || | |||||||||||  ||  | ||| |||||||||||||||||  ||||| |||||||||| |||||||| |||||    
T  34147254 gttaactttaaccccaaatgtctatggtggaccaacatggtagatagtccaccatagaccttattaatttttttcaattttaaccctttgatcttttttt 34147353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 45 - 112
Target Start/End: Complemental strand, 18971294 - 18971227
Alignment:
Q  45 gttaattttaacctcaaatgtataagatggaccaacattataagtggtctaccatagaccttattaat 112  Q
    |||||||||||||  |||| |||||| |||||||||||| ||  ||||||||  ||||||||||||||    
T  18971294 gttaattttaacccaaaatatataaggtggaccaacattgtagatggtctactgtagaccttattaat 18971227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 52 - 142
Target Start/End: Complemental strand, 34513544 - 34513453
Alignment:
Q  52 ttaacctcaaatgtataagatggaccaacattataagtggtctaccatagaccttattaat-ttttaaattttaaccatttgatctattttt 142  Q
    |||||| |||||||||| | | ||||||| |||  |||| || |||||||||||||||||| |||| ||||| |||| |||||||| |||||    
T  34513544 ttaaccccaaatgtatatggttgaccaaccttaagagtgatccaccatagaccttattaatttttttaatttaaaccgtttgatctgttttt 34513453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 45 - 127
Target Start/End: Complemental strand, 7753524 - 7753442
Alignment:
Q  45 gttaattttaacctcaaatgtataagatggaccaacattataagtggtctaccatagaccttattaatttttaaattttaacc 127  Q
    ||||| ||||||  |||||||||| | |||| ||||||| || ||| || |||||||||| ||||||||||| ||||| ||||    
T  7753524 gttaactttaactccaaatgtatatggtggatcaacattgtaggtgatccaccatagaccgtattaattttttaatttaaacc 7753442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 42 - 111
Target Start/End: Original strand, 14509320 - 14509390
Alignment:
Q  42 tccgttaatttt-aacctcaaatgtataagatggaccaacattataagtggtctaccatagaccttattaa 111  Q
    |||||||||||| ||||| |||||| |||| |  |||||| ||||| |||||| |||||||||||||||||    
T  14509320 tccgttaatttttaaccttaaatgtctaaggtaaaccaactttataggtggtccaccatagaccttattaa 14509390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 53 - 134
Target Start/End: Complemental strand, 29424605 - 29424523
Alignment:
Q  53 taacctcaaatgtataagatggaccaacattataagtggtctaccatagaccttattaa-tttttaaattttaaccatttgat 134  Q
    |||| |||||||| ||||||| ||||   ||| | |||||| | ||||||||||||||| |||||||||||||||| ||||||    
T  29424605 taacatcaaatgtctaagatgaaccatgtttaaaggtggtccatcatagaccttattaaatttttaaattttaaccttttgat 29424523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 72 - 140
Target Start/End: Original strand, 1083132 - 1083201
Alignment:
Q  72 tggaccaacattataagtggtctaccatagaccttattaatttt-taaattttaaccatttgatctattt 140  Q
    |||| |||| ||| ||||||||||   ||||||||||||||||| | ||||||||||||| |||||||||    
T  1083132 tggatcaaccttaaaagtggtctattgtagaccttattaattttgttaattttaaccattcgatctattt 1083201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 50 - 111
Target Start/End: Original strand, 10367359 - 10367420
Alignment:
Q  50 ttttaacctcaaatgtataagatggaccaacattataagtggtctaccatagaccttattaa 111  Q
    ||||||||| |||||| |||| || |||||| ||||| |||||| || ||||||||||||||    
T  10367359 ttttaaccttaaatgtctaaggtgaaccaactttataggtggtccacaatagaccttattaa 10367420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 45 - 114
Target Start/End: Original strand, 21664920 - 21664989
Alignment:
Q  45 gttaattttaacctcaaatgtataagatggaccaacattataagtggtctaccatagaccttattaattt 114  Q
    ||||| |||||| |||||||| || | |||||||||||| || |||||| | |||||||||| |||||||    
T  21664920 gttaagtttaacttcaaatgtctatggtggaccaacattgtaggtggtcaatcatagaccttgttaattt 21664989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 50 - 111
Target Start/End: Complemental strand, 25570866 - 25570805
Alignment:
Q  50 ttttaacctcaaatgtataagatggaccaacattataagtggtctaccatagaccttattaa 111  Q
    |||||| || |||||| |||| || |||||| ||||| |||||| |||||||||||||||||    
T  25570866 ttttaaacttaaatgtctaaggtgaaccaactttataggtggtccaccatagaccttattaa 25570805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 51 - 111
Target Start/End: Complemental strand, 12959700 - 12959640
Alignment:
Q  51 tttaacctcaaatgtataagatggaccaacattataagtggtctaccatagaccttattaa 111  Q
    |||||||| |||||| |||| || |||||| ||||| |||||| || ||||||||||||||    
T  12959700 tttaaccttaaatgtctaaggtgaaccaactttataggtggtccacaatagaccttattaa 12959640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 43 - 115
Target Start/End: Complemental strand, 17460685 - 17460613
Alignment:
Q  43 ccgttaattttaacctcaaatgtataagatggaccaacattataagtggtctaccatagaccttattaatttt 115  Q
    ||||||| |||||| | |||||| || | ||||||||  ||| |||||||||| | |||||||||||||||||    
T  17460685 ccgttaactttaactttaaatgtctatggtggaccaatcttaaaagtggtctatcgtagaccttattaatttt 17460613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 93; Significance: 2e-45; HSPs: 27)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 9 - 221
Target Start/End: Original strand, 668468 - 668680
Alignment:
Q  9 caattatacatccgtcagtcaaattggtcatgttccgttaattttaacctcaaatgtataagatggaccaacattataagtggtctaccatagaccttat 108  Q
    ||||| ||| ||||||| |||||||||||   ||||||||||||||||| ||||| | ||||||||| ||||||| ||  ||||||| ||||||||||||    
T  668468 caattttacgtccgtcattcaaattggtcccattccgttaattttaaccccaaatatttaagatggaacaacattgtagatggtctatcatagaccttat 668567  T
Q  109 taatttttaaattttaaccatttgatctatttttgcaaacaagaaccgttggatcacagatgtctattgtatcgtacggtgaaccatcaacaaccaatta 208  Q
    |||||||| || |||||||||| |||||||||||  |||||| || |||||||||| | | |||||||||||| |||  ||||||||||||||| |||||    
T  668568 taattttttaaatttaaccattagatctatttttcaaaacaaaaaacgttggatcaaaaaggtctattgtatcatacaatgaaccatcaacaactaatta 668667  T
Q  209 ttttctcctttct 221  Q
    ||||  |||||||    
T  668668 tttttccctttct 668680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 45 - 142
Target Start/End: Complemental strand, 13533259 - 13533162
Alignment:
Q  45 gttaattttaacctcaaatgtataagatggaccaacattataagtggtctaccatagaccttattaatttttaaattttaaccatttgatctattttt 142  Q
    ||||| |||||| |||||||| || | |||||||||||||||  | ||| |||||||||||||||||||||| ||||||||||||||||||| |||||    
T  13533259 gttaaatttaacttcaaatgtctatggtggaccaacattatagatagtccaccatagaccttattaatttttcaattttaaccatttgatcttttttt 13533162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 50 - 140
Target Start/End: Original strand, 34438526 - 34438616
Alignment:
Q  50 ttttaacctcaaatgtataagatggaccaacattataagtggtctaccatagaccttattaatttttaaattttaaccatttgatctattt 140  Q
    |||||||||||||||| || | ||||| |||||||||  | ||| |||||||||||||||||||||| ||||| |||||||||||||||||    
T  34438526 ttttaacctcaaatgtctatggtggactaacattatagatagtccaccatagaccttattaattttttaatttcaaccatttgatctattt 34438616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 50 - 134
Target Start/End: Original strand, 56296313 - 56296398
Alignment:
Q  50 ttttaacctcaaatgtataagatggaccaacattataagtggtctaccatagaccttattaa-tttttaaattttaaccatttgat 134  Q
    ||||||||  |||||| |||| ||||||||||| ||| |||||||||||||||||||| ||| ||||| |||||||||||||||||    
T  56296313 ttttaaccctaaatgtctaaggtggaccaacatcataggtggtctaccatagaccttactaagttttttaattttaaccatttgat 56296398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 45 - 141
Target Start/End: Original strand, 27847795 - 27847891
Alignment:
Q  45 gttaattttaacctcaaatgtataagatggaccaacattataagtggtctaccatagaccttattaatttttaaattttaaccatttgatctatttt 141  Q
    ||||| ||||||| |||||||||| | ||| |||| ||||||  | ||| |||||||||||||||||||||| |||||||||| |||||||| ||||    
T  27847795 gttaagtttaaccccaaatgtatatggtgggccaagattatagatagtccaccatagaccttattaatttttcaattttaaccctttgatctttttt 27847891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 50 - 221
Target Start/End: Complemental strand, 43419371 - 43419200
Alignment:
Q  50 ttttaacctcaaatgtataagatggaccaacattataagtggtctaccatagaccttattaatttttaaattttaaccatttgatctatt-tttgcaaac 148  Q
    ||||||||  ||||||||||| || |||||||||||| |||||| |||||||| |||| ||  |||| |||||||||| |||||||| || | |   ||     
T  43419371 ttttaaccataaatgtataaggtgaaccaacattataggtggtccaccatagatcttaatagatttttaattttaaccctttgatcttttgtctattaat 43419272  T
Q  149 aagaaccgttggatcacagatgtctattgtatcgtacggtgaaccatcaacaaccaattattttctcctttct 221  Q
     ||||| ||| ||||| | |||||||||||||||||  |||||||  |||||||||||| ||||| |||||||    
T  43419271 gagaacggttagatcatacatgtctattgtatcgtatagtgaaccgccaacaaccaatt-ttttcccctttct 43419200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 45 - 142
Target Start/End: Original strand, 40723345 - 40723443
Alignment:
Q  45 gttaattttaacctcaaatgtataagatggaccaacattataagtggtctaccatagaccttattaatt-tttaaattttaaccatttgatctattttt 142  Q
    ||||| |||||||||||||||||| | ||||||||| |||  |||||||||||||||| | |||||||| ||||||| |||| | |||||||| |||||    
T  40723345 gttaagtttaacctcaaatgtatatggtggaccaaccttaagagtggtctaccatagatcctattaattatttaaatgttaatcgtttgatcttttttt 40723443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 60 - 134
Target Start/End: Complemental strand, 26393113 - 26393038
Alignment:
Q  60 aaatgtataagatggaccaacattataagtggtctaccatagaccttattaa-tttttaaattttaaccatttgat 134  Q
    |||||| |||| || |||||||||||| |||||| ||||||||||||| ||| ||||| |||||||||||||||||    
T  26393113 aaatgtctaaggtgaaccaacattataggtggtccaccatagaccttactaagttttttaattttaaccatttgat 26393038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 60 - 134
Target Start/End: Original strand, 56000417 - 56000492
Alignment:
Q  60 aaatgtataagatggaccaacattataagtggtctaccatagaccttattaa-tttttaaattttaaccatttgat 134  Q
    |||||| |||| ||||||||||||||| |||||| ||| ||||||||| ||| ||||| |||||||||||||||||    
T  56000417 aaatgtctaaggtggaccaacattataggtggtccaccgtagaccttactaagttttttaattttaaccatttgat 56000492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 45 - 142
Target Start/End: Original strand, 6348272 - 6348370
Alignment:
Q  45 gttaattttaacctcaaatgtataagatggaccaacattataagtggtctaccatagaccttattaat-ttttaaattttaaccatttgatctattttt 142  Q
    ||||| ||||||||||||||| || | ||||||||| |||  ||||||| ||| |||||||||||||| |||  |||||||||| |||||||| |||||    
T  6348272 gttaagtttaacctcaaatgtctatggtggaccaaccttaagagtggtccaccgtagaccttattaatatttctaattttaaccctttgatcttttttt 6348370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 50 - 190
Target Start/End: Complemental strand, 38555272 - 38555130
Alignment:
Q  50 ttttaacctcaaatgtataagatggaccaacattataagtggtctaccatagaccttatt-aatttttaaattttaaccatttgatctatttt-tgcaaa 147  Q
    |||||| || |||||| |||| || |||||| || || |||||||||||||||| ||||| ||||||| ||||| |||| |||||||| |||| |  |||    
T  38555272 ttttaatcttaaatgtctaaggtgaaccaactttgtaggtggtctaccatagactttattaaattttttaatttaaaccgtttgatcttttttatttaaa 38555173  T
Q  148 caagaaccgttggatcacagatgtctattgtatcgtacggtga 190  Q
      |||||| |||||| ||| ||||||||| |||| ||||||||    
T  38555172 ggagaaccattggattacacatgtctattttatcttacggtga 38555130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 60 - 134
Target Start/End: Complemental strand, 3533594 - 3533519
Alignment:
Q  60 aaatgtataagatggaccaacattataagtggtctaccatagaccttattaa-tttttaaattttaaccatttgat 134  Q
    |||||| |||| | ||||||||||||| | |||| ||||||||||||| ||| ||||| |||||||||||||||||    
T  3533594 aaatgtctaaggtcgaccaacattataggcggtccaccatagaccttactaagttttttaattttaaccatttgat 3533519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 46 - 136
Target Start/End: Original strand, 4714139 - 4714230
Alignment:
Q  46 ttaattttaacctcaaatgtataagatggaccaacattataagtggtctaccatagaccttattaat-ttttaaattttaaccatttgatct 136  Q
    |||| |||||| |||||||| || | |||| |||| |||  ||||||| ||||||||| | |||||| ||||||||||||||||||||||||    
T  4714139 ttaagtttaacttcaaatgtctatggtggatcaaccttaagagtggtccaccatagacttcattaatattttaaattttaaccatttgatct 4714230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 45 - 142
Target Start/End: Original strand, 2162727 - 2162825
Alignment:
Q  45 gttaattttaacctcaaatgtataagatggaccaacattataagtggtctaccatagaccttattaa-tttttaaattttaaccatttgatctattttt 142  Q
    ||||| |||||||  |||| | |||| | |||||||||| || |||||| ||||||||||||||||| ||||| |||||||||  |||||||| |||||    
T  2162727 gttaagtttaaccctaaatatgtaaggttgaccaacattttaggtggtccaccatagaccttattaattttttcaattttaacactttgatcttttttt 2162825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 56 - 138
Target Start/End: Original strand, 33231519 - 33231601
Alignment:
Q  56 cctcaaatgtataagatggaccaacattataagtggtctaccatagaccttattaatttttaaattttaaccatttgatctat 138  Q
    |||||||||| || | ||||| ||| ||| |||||||| |||||| ||  ||||||||||| ||||| |||||||||||||||    
T  33231519 cctcaaatgtctatggtggacaaaccttagaagtggtccaccataaactctattaattttttaatttcaaccatttgatctat 33231601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 86 - 191
Target Start/End: Complemental strand, 53401442 - 53401336
Alignment:
Q  86 aagtggtctaccatagaccttattaatttttaaattttaaccatttgatctatttttgcaaaca-agaaccgttggatcacagatgtctattgtatcgta 184  Q
    ||||||||||||||||||||  | ||||||| |||||||||  |||||||| ||||| |||| | | |||||||||||||   | |||||||||| | ||    
T  53401442 aagtggtctaccatagacctattaaattttttaattttaactgtttgatcttttttttcaaatagaaaaccgttggatcatgtaggtctattgtaacata 53401343  T
Q  185 cggtgaa 191  Q
    |||||||    
T  53401342 cggtgaa 53401336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 62 - 142
Target Start/End: Original strand, 1794548 - 1794629
Alignment:
Q  62 atgtataagatggaccaacattataagtggtctaccatagaccttatt-aatttttaaattttaaccatttgatctattttt 142  Q
    ||||||| | ||||||||| |||  ||||||| ||||||||||||||| ||||||| ||||| |||| ||||||| ||||||    
T  1794548 atgtatatggtggaccaaccttaagagtggtccaccatagaccttattaaattttttaatttaaaccgtttgatcaattttt 1794629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 46 - 134
Target Start/End: Original strand, 29663758 - 29663847
Alignment:
Q  46 ttaattttaacctcaaatgtataagatggaccaacattataagtggtctaccatagaccttattaa-tttttaaattttaaccatttgat 134  Q
    ||||||||||| | |||||| |||| || |||||||||||| |||||| |||||| |||||| |||  |||| ||||||||||| |||||    
T  29663758 ttaattttaacattaaatgtctaaggtgaaccaacattataggtggtccaccataaaccttactaagatttttaattttaaccacttgat 29663847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 88 - 141
Target Start/End: Complemental strand, 52633651 - 52633598
Alignment:
Q  88 gtggtctaccatagaccttattaatttttaaattttaaccatttgatctatttt 141  Q
    ||||||||||||||||||||| |||||||  |||||||| ||||||||| ||||    
T  52633651 gtggtctaccatagaccttataaatttttttattttaacaatttgatctttttt 52633598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 19 - 83
Target Start/End: Original strand, 36614185 - 36614249
Alignment:
Q  19 tccgtcagtcaaattggtcatgttccgttaattttaacctcaaatgtataagatggaccaacatt 83  Q
    ||||||| |||||||||||  ||| |||||||||||||  ||||||| |||||| ||||||||||    
T  36614185 tccgtcactcaaattggtcccgtttcgttaattttaactccaaatgtttaagatagaccaacatt 36614249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 88 - 134
Target Start/End: Original strand, 306735 - 306780
Alignment:
Q  88 gtggtctaccatagaccttattaatttttaaattttaaccatttgat 134  Q
    |||||||| ||||||||||||||| ||||||||||||||| ||||||    
T  306735 gtggtctatcatagaccttattaa-ttttaaattttaaccctttgat 306780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 50 - 131
Target Start/End: Original strand, 17494247 - 17494329
Alignment:
Q  50 ttttaacctcaaatgtataagatggaccaacattataagtggtctaccatagaccttattaatttt-taaattttaaccattt 131  Q
    ||||||||| |||||| |||  || | |||| ||| |||| ||| ||||||||||||||||||||| | ||||||||||||||    
T  17494247 ttttaaccttaaatgtctaacgtgaaacaacgttaaaagtagtccaccatagaccttattaattttatgaattttaaccattt 17494329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 45 - 142
Target Start/End: Complemental strand, 37884276 - 37884178
Alignment:
Q  45 gttaattttaacctcaaatgtataagatggaccaacattataagtggtctaccatagaccttatt-aatttttaaattttaaccatttgatctattttt 142  Q
    ||||| ||||||| ||||| |||| | || ||||| ||||||  | ||| ||||||||||||||| ||||||  |||||||||| |||||||| |||||    
T  37884276 gttaagtttaaccccaaatatatatggtgaaccaatattatatatagtccaccatagaccttattaaattttccaattttaaccctttgatcttttttt 37884178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 72 - 140
Target Start/End: Original strand, 2311098 - 2311167
Alignment:
Q  72 tggaccaacattataagtggtctaccatagaccttattaat-ttttaaattttaaccatttgatctattt 140  Q
    ||||||||  ||| |||||||||| | |||||||||||||| || | ||||||||||||| |||||||||    
T  2311098 tggaccaatcttaaaagtggtctatcgtagaccttattaatattgttaattttaaccattcgatctattt 2311167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 50 - 111
Target Start/End: Complemental strand, 11114976 - 11114915
Alignment:
Q  50 ttttaacctcaaatgtataagatggaccaacattataagtggtctaccatagaccttattaa 111  Q
    ||||||||| |||||| |||| || |||||| || || |||||||||||||||| |||||||    
T  11114976 ttttaaccttaaatgtctaagctgaaccaactttgtaggtggtctaccatagactttattaa 11114915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 45 - 122
Target Start/End: Complemental strand, 28657116 - 28657039
Alignment:
Q  45 gttaattttaacctcaaatgtataagatggaccaacattataagtggtctaccatagaccttattaatttttaaattt 122  Q
    ||||| ||||||| ||||||| | || ||||||||| || || ||| || ||| |||||||||||||||||| |||||    
T  28657116 gttaactttaaccccaaatgtcttaggtggaccaaccttgtaggtgatccaccgtagaccttattaattttttaattt 28657039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 86 - 138
Target Start/End: Original strand, 50547066 - 50547118
Alignment:
Q  86 aagtggtctaccatagaccttattaatttttaaattttaaccatttgatctat 138  Q
    |||||||| |||||| ||  ||||||||||| ||||| |||||||||||||||    
T  50547066 aagtggtccaccataaactctattaattttttaatttcaaccatttgatctat 50547118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 60; Significance: 1e-25; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 19 - 114
Target Start/End: Original strand, 136719 - 136814
Alignment:
Q  19 tccgtcagtcaaattggtcatgttccgttaattttaacctcaaatgtataagatggaccaacattataagtggtctaccatagaccttattaattt 114  Q
    ||||| ||||||||| ||||| |||||||||||||||| |||||||| |||| |||||| ||||  ||||||||||||||||||||||||||||||    
T  136719 tccgttagtcaaattagtcatattccgttaattttaacatcaaatgtctaaggtggaccgacatggtaagtggtctaccatagaccttattaattt 136814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 45 - 142
Target Start/End: Complemental strand, 7312281 - 7312184
Alignment:
Q  45 gttaattttaacctcaaatgtataagatggaccaacattataagtggtctaccatagaccttattaatttttaaattttaaccatttgatctattttt 142  Q
    ||||| ||||||| ||||||||| ||||||||||||||| || |||||  ||| |||| ||||||||||||| ||||| ||||||||||||| |||||    
T  7312281 gttaactttaaccccaaatgtattagatggaccaacattgtaggtggttcaccgtagatcttattaattttttaatttcaaccatttgatcttttttt 7312184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 25 - 114
Target Start/End: Original strand, 30231576 - 30231665
Alignment:
Q  25 agtcaaattggtcatgttccgttaattttaacctcaaatgtataagatggaccaacattataagtggtctaccatagaccttattaattt 114  Q
    ||||||||| ||| | |||||||||||||||| |||||||| |||| || ||||||||  ||||||||| |||||||||||| |||||||    
T  30231576 agtcaaattagtcctattccgttaattttaacatcaaatgtctaaggtgaaccaacatggtaagtggtccaccatagaccttgttaattt 30231665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 45 - 136
Target Start/End: Original strand, 24757000 - 24757092
Alignment:
Q  45 gttaattttaacctcaaatgtataagatggaccaacattataagtggtctaccatagaccttattaatt-tttaaattttaaccatttgatct 136  Q
    ||||| ||||||| |||| |||| ||||||| ||||||| || |||||||||| ||||||||||||||| ||| ||||||||| |||||||||    
T  24757000 gttaactttaaccacaaaagtattagatggagcaacattgtaggtggtctaccttagaccttattaattcttttaattttaacaatttgatct 24757092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 43 - 140
Target Start/End: Original strand, 29380306 - 29380404
Alignment:
Q  43 ccgttaattttaacctcaaatgtataagatggaccaacattataagtggtctaccatagaccttattaatttt-taaattttaaccatttgatctattt 140  Q
    |||||||||||||| ||||||||||| | |||| |||| ||| |||| ||| | | ||||||||||||||||| | ||||||||||||| |||||||||    
T  29380306 ccgttaattttaacttcaaatgtatatggtggatcaaccttaaaagtagtccatcgtagaccttattaattttgttaattttaaccattcgatctattt 29380404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 45 - 142
Target Start/End: Original strand, 32505786 - 32505884
Alignment:
Q  45 gttaattttaacctcaaatgtataagatggaccaacattataagtggtctaccatagaccttattaa--tttttaaattttaaccatttgatctattttt 142  Q
    ||||| ||||||| ||||||| ||  |||||| |||||||  ||||||| |||||||||||||||||  ||||||| ||| |||| ||||||||||||||    
T  32505786 gttaagtttaaccccaaatgtctataatggac-aacattaagagtggtccaccatagaccttattaaattttttaagtttaaaccgtttgatctattttt 32505884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 43 - 140
Target Start/End: Complemental strand, 23397355 - 23397257
Alignment:
Q  43 ccgttaattttaacctcaaatgtataagatggaccaacattataagtggtctaccatagaccttattaatttt-taaattttaaccatttgatctattt 140  Q
    ||||||| |||||| |||||||| || | ||||||||| ||| |||| ||| ||| || |||||||||||||| | ||||||||||||  |||||||||    
T  23397355 ccgttaaatttaacttcaaatgtctatggtggaccaaccttaaaagtagtccaccgtataccttattaattttgttaattttaaccatccgatctattt 23397257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 50 - 111
Target Start/End: Complemental strand, 293636 - 293575
Alignment:
Q  50 ttttaacctcaaatgtataagatggaccaacattataagtggtctaccatagaccttattaa 111  Q
    ||||||||| |||||| |||| || |||||| ||||| |||||| |||||||||||||||||    
T  293636 ttttaaccttaaatgtctaaggtgaaccaactttataggtggtccaccatagaccttattaa 293575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 50 - 111
Target Start/End: Complemental strand, 14328770 - 14328709
Alignment:
Q  50 ttttaacctcaaatgtataagatggaccaacattataagtggtctaccatagaccttattaa 111  Q
    ||||||||| |||||| |||| || |||||| ||||| |||||| |||||||||||||||||    
T  14328770 ttttaaccttaaatgtctaaggtgaaccaactttataggtggtccaccatagaccttattaa 14328709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 50 - 111
Target Start/End: Complemental strand, 14421780 - 14421719
Alignment:
Q  50 ttttaacctcaaatgtataagatggaccaacattataagtggtctaccatagaccttattaa 111  Q
    ||||||||| |||||| |||| || |||||| ||||| |||||| |||||||||||||||||    
T  14421780 ttttaaccttaaatgtctaaggtgaaccaactttataggtggtccaccatagaccttattaa 14421719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 42 - 127
Target Start/End: Original strand, 9927716 - 9927802
Alignment:
Q  42 tccgttaatttt-aacctcaaatgtataagatggaccaacattataagtggtctaccatagaccttatta-atttttaaattttaacc 127  Q
    |||||||||||| ||||| |||||| ||||||| |||||| || || ||||||||||| |||| |||||| |||||| ||||||||||    
T  9927716 tccgttaatttttaaccttaaatgtctaagatgaaccaactttgtaggtggtctacca-agactttattacattttttaattttaacc 9927802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 50 - 136
Target Start/End: Complemental strand, 27082168 - 27082081
Alignment:
Q  50 ttttaacctcaaatgtataagatggaccaacattataagtggtctaccatagaccttattaattt-ttaaattttaaccatttgatct 136  Q
    |||||||  |||||||||| | ||||||||||| |||  || || ||| |||||||||||||||| || ||||||| |||||||||||    
T  27082168 ttttaactccaaatgtatatggtggaccaacataatacatgatccaccgtagaccttattaatttatttaattttagccatttgatct 27082081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 45 - 114
Target Start/End: Original strand, 15728848 - 15728917
Alignment:
Q  45 gttaattttaacctcaaatgtataagatggaccaacattataagtggtctaccatagaccttattaattt 114  Q
    ||||| ||||||||||||| | || | |||||||||||||||  | ||| |||||||||| |||||||||    
T  15728848 gttaagtttaacctcaaatatctatggtggaccaacattatagatagtccaccatagaccctattaattt 15728917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 50 - 142
Target Start/End: Original strand, 22298724 - 22298816
Alignment:
Q  50 ttttaacctcaaatgtataagatggaccaacattataagtggtctaccatagaccttattaatttttaaattttaaccatttgatctattttt 142  Q
    ||||||||| |||||| |||| ||||| ||| ||| | ||||||||||||| || |||||||  |||  | ||||||| |||||||| |||||    
T  22298724 ttttaaccttaaatgtctaaggtggacgaactttacaggtggtctaccataaactttattaaaatttttaatttaaccgtttgatcttttttt 22298816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 54; Significance: 4e-22; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 45 - 142
Target Start/End: Complemental strand, 9662235 - 9662138
Alignment:
Q  45 gttaattttaacctcaaatgtataagatggaccaacattataagtggtctaccatagaccttattaatttttaaattttaaccatttgatctattttt 142  Q
    ||||| |||||| |||||||| || | |||||||||||||||  | ||| |||||||||||||||||||||| ||||||||||||||||||| |||||    
T  9662235 gttaaatttaacttcaaatgtctatggtggaccaacattatagatagtccaccatagaccttattaatttttcaattttaaccatttgatcttttttt 9662138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 19 - 114
Target Start/End: Original strand, 26135733 - 26135828
Alignment:
Q  19 tccgtcagtcaaattggtcatgttccgttaattttaacctcaaatgtataagatggaccaacattataagtggtctaccatagaccttattaattt 114  Q
    ||||| ||||||||| ||| | ||  |||||||||||| |||||||| ||||||||||| ||||  ||||||||| ||||||||||||||||||||    
T  26135733 tccgttagtcaaattagtcctattatgttaattttaacatcaaatgtctaagatggaccgacatggtaagtggtccaccatagaccttattaattt 26135828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 50 - 207
Target Start/End: Complemental strand, 35484306 - 35484148
Alignment:
Q  50 ttttaacctcaaatgtataagatggaccaacattataagtggtctaccatagaccttattaatttttaaattttaaccatttgatctatt-tttgcaaac 148  Q
    ||||||||  |||||| |||| || |||||||||||| |||||| |||||||| |||| ||  |||| |||||||||| |||||||| || |||  |||     
T  35484306 ttttaaccctaaatgtctaaggtgaaccaacattataggtggtccaccatagatcttaatagatttttaattttaaccctttgatcttttgtttataaat 35484207  T
Q  149 aagaaccgttggatcacagatgtctattgtatcgtacggtgaaccatcaacaaccaatt 207  Q
     ||||| ||| ||||| | |||||||||||||||||  |||||||  ||||||||||||    
T  35484206 gagaacagttagatcatacatgtctattgtatcgtatagtgaaccgccaacaaccaatt 35484148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 46 - 111
Target Start/End: Original strand, 7354623 - 7354688
Alignment:
Q  46 ttaattttaacctcaaatgtataagatggaccaacattataagtggtctaccatagaccttattaa 111  Q
    |||| ||||||| ||||||| ||||||||||||||||||||||||||| | | |||||||||||||    
T  7354623 ttaactttaaccacaaatgtctaagatggaccaacattataagtggtccatcgtagaccttattaa 7354688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 50 - 141
Target Start/End: Original strand, 28325192 - 28325284
Alignment:
Q  50 ttttaacctcaaatgtataagatggaccaacattataagtggtctaccatagaccttatt-aatttttaaattttaaccatttgatctatttt 141  Q
    |||||| || |||||| |||| ||||||||| || || |||||||||||||||| ||||| || |||||||||| |||| |||||||| ||||    
T  28325192 ttttaatcttaaatgtctaaggtggaccaactttgtaggtggtctaccatagactttattaaaattttaaatttaaaccgtttgatctttttt 28325284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 50 - 200
Target Start/End: Original strand, 26406245 - 26406395
Alignment:
Q  50 ttttaacctcaaatgtataagatggaccaacattataagtggtctaccatagaccttattaattt-ttaaattttaaccatttgatctatttttgcaaac 148  Q
    ||||||||| |||||| |||| || |||||| || || |||||| ||||||||  |||| ||||  || |||||||||| |||||| | |||||  |||     
T  26406245 ttttaaccttaaatgtctaaggtgaaccaactttgtaggtggtccaccatagatattataaattcatttaattttaaccctttgatat-tttttaaaaaa 26406343  T
Q  149 aagaaccgttggatcacagatgtctattgtatcgtacggtgaaccatcaaca 200  Q
     ||||||||||||||| | |||||| ||||||| ||| |||||| |||||||    
T  26406344 gagaaccgttggatcatatatgtctgttgtatcatacagtgaacaatcaaca 26406395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 45 - 134
Target Start/End: Original strand, 16755989 - 16756079
Alignment:
Q  45 gttaattttaacctcaaatgtataagatggaccaacattataagtggtctaccatagaccttattaatt-tttaaattttaaccatttgat 134  Q
    ||||| ||||||||||||||| || | || | |||| ||| |||| |||||||||||| | |||||||| ||| |||||||||||||||||    
T  16755989 gttaactttaacctcaaatgtctatggtgaaacaaccttaaaagttgtctaccatagatcctattaattattttaattttaaccatttgat 16756079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 45 - 140
Target Start/End: Original strand, 11501297 - 11501393
Alignment:
Q  45 gttaattttaacctcaaatgtataagatggaccaacattataagtggtctaccatagaccttattaatttt-taaattttaaccatttgatctattt 140  Q
    ||||| |||||| |||||||| || | ||||||||| ||| |||||||  |   ||||||||||||||||| | ||||||||||||| |||||||||    
T  11501297 gttaactttaacttcaaatgtctatggtggaccaaccttaaaagtggttcattgtagaccttattaattttgttaattttaaccattcgatctattt 11501393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 60 - 134
Target Start/End: Original strand, 45719745 - 45719820
Alignment:
Q  60 aaatgtataagatggaccaacattataagtggtctaccatagaccttattaa-tttttaaattttaaccatttgat 134  Q
    |||||| |||| ||||||||||||||| ||| || |||||| |||||| ||| ||||| ||||||||||| |||||    
T  45719745 aaatgtctaaggtggaccaacattataggtgctccaccataaaccttactaagttttttaattttaaccaattgat 45719820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 50 - 135
Target Start/End: Complemental strand, 25154932 - 25154846
Alignment:
Q  50 ttttaacctcaaatgtataagatggaccaacattataagtggtctaccatagaccttatt-aatttttaaattttaaccatttgatc 135  Q
    ||||||||| |||||| |||| || |||||| |||||||||||| |||||| | |||||| ||| ||| | |||||||| |||||||    
T  25154932 ttttaaccttaaatgtctaaggtgaaccaactttataagtggtccaccataaaacttattaaatcttttatttttaaccgtttgatc 25154846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 19 - 135
Target Start/End: Complemental strand, 3332181 - 3332064
Alignment:
Q  19 tccgtcagtcaaattggtcatgttccgttaattttaacctcaaatgtataagatggaccaacattataagtggtctaccatagaccttattaattt-tta 117  Q
    ||||| ||||| ||| ||| | |||||||||||||||| | |||||| |||| || ||||| ||  |||||| |  |||||| ||||||||||||| ||     
T  3332181 tccgttagtcatattagtcctcttccgttaattttaacattaaatgtttaaggtgcaccaatatggtaagtgatacaccatataccttattaatttattt 3332082  T
Q  118 aattttaaccatttgatc 135  Q
    ||||||| || |||||||    
T  3332081 aattttagccctttgatc 3332064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 50 - 111
Target Start/End: Complemental strand, 46458709 - 46458648
Alignment:
Q  50 ttttaacctcaaatgtataagatggaccaacattataagtggtctaccatagaccttattaa 111  Q
    ||||||||| |||||| |||| || |||||| ||||| || ||| |||||||||||||||||    
T  46458709 ttttaaccttaaatgtctaaggtgaaccaactttataggtagtccaccatagaccttattaa 46458648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 49; Significance: 4e-19; HSPs: 25)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 45 - 140
Target Start/End: Original strand, 32693947 - 32694043
Alignment:
Q  45 gttaattttaacctcaaatgtataagatggaccaacattataagtggtctaccatagaccttattaatttt-taaattttaaccatttgatctattt 140  Q
    ||||| |||||| | ||||||||| ||||||||||| ||| |||||| ||| ||||||||||||||||||| | |||||||||| ||||||||||||    
T  32693947 gttaactttaactttaaatgtatatgatggaccaaccttaaaagtggcctatcatagaccttattaattttattaattttaaccgtttgatctattt 32694043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 60 - 134
Target Start/End: Complemental strand, 24069432 - 24069357
Alignment:
Q  60 aaatgtataagatggaccaacattataagtggtctaccatagaccttattaa-tttttaaattttaaccatttgat 134  Q
    |||||| |||| ||||||||||||||| |||||| ||||||||||||| ||| ||||| |||||||||||||||||    
T  24069432 aaatgtctaaggtggaccaacattataggtggtccaccatagaccttactaagttttttaattttaaccatttgat 24069357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 50 - 134
Target Start/End: Original strand, 13513540 - 13513625
Alignment:
Q  50 ttttaacctcaaatgtataagatggaccaacattataagtggtctaccatagaccttattaa-tttttaaattttaaccatttgat 134  Q
    ||||||| |||||||||||||||| ||||   ||| |||||||| |||||| |||||||||| ||||| |||||||||||||||||    
T  13513540 ttttaacatcaaatgtataagatgaaccatatttaaaagtggtccaccatataccttattaatttttttaattttaaccatttgat 13513625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 50 - 134
Target Start/End: Original strand, 13603073 - 13603158
Alignment:
Q  50 ttttaacctcaaatgtataagatggaccaacattataagtggtctaccatagaccttattaa-tttttaaattttaaccatttgat 134  Q
    ||||||| |||||||||||||||| ||||   ||| |||||||| |||||| |||||||||| ||||| |||||||||||||||||    
T  13603073 ttttaacatcaaatgtataagatgaaccatatttaaaagtggtccaccatataccttattaatttttttaattttaaccatttgat 13603158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 50 - 134
Target Start/End: Complemental strand, 34617191 - 34617106
Alignment:
Q  50 ttttaacctcaaatgtataagatggaccaacattataagtggtctaccatagacctta-ttaatttttaaattttaaccatttgat 134  Q
    ||||||||  ||||||||||| ||||||||||||| | |||||| ||| ||||||||| | ||||||| |||||||||||||||||    
T  34617191 ttttaaccctaaatgtataaggtggaccaacattacaggtggtccaccgtagaccttactaaattttttaattttaaccatttgat 34617106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 60 - 134
Target Start/End: Complemental strand, 7770884 - 7770809
Alignment:
Q  60 aaatgtataagatggaccaacattataagtggtctaccatagaccttattaa-tttttaaattttaaccatttgat 134  Q
    |||||| |||| ||||||||||||||| ||||||  |||||||||||| ||| ||||| |||||||||||||||||    
T  7770884 aaatgtctaaggtggaccaacattataggtggtcctccatagaccttactaagttttttaattttaaccatttgat 7770809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 60 - 134
Target Start/End: Complemental strand, 7796794 - 7796719
Alignment:
Q  60 aaatgtataagatggaccaacattataagtggtctaccatagaccttattaa-tttttaaattttaaccatttgat 134  Q
    |||||| |||| ||||||||||||||| ||||||  |||||||||||| ||| ||||| |||||||||||||||||    
T  7796794 aaatgtctaaggtggaccaacattataggtggtcctccatagaccttactaagttttttaattttaaccatttgat 7796719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 60 - 134
Target Start/End: Complemental strand, 7816075 - 7816000
Alignment:
Q  60 aaatgtataagatggaccaacattataagtggtctaccatagaccttattaa-tttttaaattttaaccatttgat 134  Q
    |||||| |||| ||||||||||||||| ||||||  |||||||||||| ||| ||||| |||||||||||||||||    
T  7816075 aaatgtctaaggtggaccaacattataggtggtcctccatagaccttactaagttttttaattttaaccatttgat 7816000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 60 - 134
Target Start/End: Original strand, 39515329 - 39515404
Alignment:
Q  60 aaatgtataagatggaccaacattataagtggtctaccatagaccttattaattttta-aattttaaccatttgat 134  Q
    |||||| |||| ||||||||||||||| |||||| | ||||||||||| ||| ||||| |||||||||||||||||    
T  39515329 aaatgtctaaggtggaccaacattataggtggtccatcatagaccttactaagttttataattttaaccatttgat 39515404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 45 - 140
Target Start/End: Complemental strand, 42100105 - 42100009
Alignment:
Q  45 gttaattttaacctcaaatgtataagatggaccaacattataagtggtctaccatagaccttattaatttt-taaattttaaccatttgatctattt 140  Q
    ||||| |||||| |||||||| |  | ||||||||| ||| |||||||| | | ||||||||||||||||| | ||||||||||||| |||||||||    
T  42100105 gttaactttaacttcaaatgtctttggtggaccaaccttaaaagtggtccatcgtagaccttattaattttgttaattttaaccattcgatctattt 42100009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 51 - 142
Target Start/End: Complemental strand, 38696999 - 38696908
Alignment:
Q  51 tttaacctcaaatgtataagatggaccaacattataagtggtctaccatagaccttattaatttttaaattttaaccatttgatctattttt 142  Q
    ||||||||||||| | ||   |||||||||||||||  | ||| ||||||||||| |||||||||| |||||||| | |||||||| |||||    
T  38696999 tttaacctcaaatttctattgtggaccaacattatagatagtccaccatagacctaattaatttttcaattttaatcctttgatcttttttt 38696908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 72 - 202
Target Start/End: Complemental strand, 44076332 - 44076202
Alignment:
Q  72 tggaccaacattataagtggtctaccatagaccttattaattttta-aattttaaccatttgatctatttttgcaaacaagaaccgttggatcacagatg 170  Q
    |||| |||||||| || || || |||||| | |||||||||||||  ||||| ||||||||||||||||| |  ||||| |||||||| |||||| || |    
T  44076332 tggaacaacattaaaaatgatccaccataaatcttattaatttttttaatttaaaccatttgatctatttattaaaacacgaaccgtttgatcac-gagg 44076234  T
Q  171 tctattgtatcgtacggtgaaccatcaacaac 202  Q
    | ||||||||| ||  ||||| ||||||||||    
T  44076233 tttattgtatcatatagtgaatcatcaacaac 44076202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 45 - 147
Target Start/End: Original strand, 42877736 - 42877838
Alignment:
Q  45 gttaattttaacctcaaatgtataagatggaccaacattataagtggtctaccatagaccttattaatttttaaattttaaccatttgatctatttttgc 144  Q
    ||||| ||||||| ||||||| || | ||||||||| |||  | ||||| |||||||| | |||||||| || ||||| |||| |||||||||||||| |    
T  42877736 gttaactttaaccccaaatgtgtatggtggaccaaccttaagaatggtccaccatagatcctattaattatttaatttcaaccctttgatctatttttcc 42877835  T
Q  145 aaa 147  Q
    |||    
T  42877836 aaa 42877838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 50 - 111
Target Start/End: Complemental strand, 13367046 - 13366985
Alignment:
Q  50 ttttaacctcaaatgtataagatggaccaacattataagtggtctaccatagaccttattaa 111  Q
    ||||||||| |||||| |||| || |||||| ||||| |||||| |||||||||||||||||    
T  13367046 ttttaaccttaaatgtctaaggtgaaccaactttataggtggtccaccatagaccttattaa 13366985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 50 - 115
Target Start/End: Original strand, 39220799 - 39220864
Alignment:
Q  50 ttttaacctcaaatgtataagatggaccaacattataagtggtctaccatagaccttattaatttt 115  Q
    ||||||||| |||||| |||| || | ||| |||| |||| |||||||||||||||||||||||||    
T  39220799 ttttaaccttaaatgtctaaggtgaaacaatattaaaagtagtctaccatagaccttattaatttt 39220864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 50 - 142
Target Start/End: Original strand, 44606259 - 44606352
Alignment:
Q  50 ttttaacctcaaatgtataagatggaccaacattataagtggtctaccatagaccttatt-aatttttaaattttaaccatttgatctattttt 142  Q
    ||||||||| |||||| |||| || |||||| ||||| |||||| |||||||||||| || ||| ||| | |||||||| |||||||| |||||    
T  44606259 ttttaaccttaaatgtctaaggtgaaccaactttataggtggtccaccatagaccttgttaaatcttttatttttaaccgtttgatcttttttt 44606352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 87 - 142
Target Start/End: Original strand, 6397942 - 6397998
Alignment:
Q  87 agtggtctaccatagaccttattaa-tttttaaattttaaccatttgatctattttt 142  Q
    ||||||| ||||||||||||||||| ||||| ||||| ||||||||||||| |||||    
T  6397942 agtggtccaccatagaccttattaatttttttaatttaaaccatttgatctgttttt 6397998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 45 - 116
Target Start/End: Complemental strand, 42872188 - 42872117
Alignment:
Q  45 gttaattttaacctcaaatgtataagatggaccaacattataagtggtctaccatagaccttattaattttt 116  Q
    ||||| ||||||||||||||| || | | ||||||| |||  |||||||||||||||| | |||||||||||    
T  42872188 gttaactttaacctcaaatgtctatggtagaccaaccttaagagtggtctaccatagatcctattaattttt 42872117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 72 - 131
Target Start/End: Original strand, 45395112 - 45395171
Alignment:
Q  72 tggaccaacattataagtggtctaccatagaccttattaatttttaaattttaaccattt 131  Q
    |||||||| ||| || |||||| | |||||||| ||||||||||||||||| ||||||||    
T  45395112 tggaccaatattgtaggtggtccatcatagaccgtattaatttttaaatttaaaccattt 45395171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 43 - 140
Target Start/End: Original strand, 32797256 - 32797354
Alignment:
Q  43 ccgttaattttaacctcaaatgtataagatggaccaacattataagtggtctaccatagaccttattaatttt-taaattttaaccatttgatctattt 140  Q
    ||||||| ||||||  ||||||| || |||||| |||| ||| || ||||  | | ||||||||||||||||| | ||||||||||||| |||||||||    
T  32797256 ccgttaagtttaactccaaatgtctatgatggatcaaccttaaaaatggttcatcgtagaccttattaattttgttaattttaaccattcgatctattt 32797354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 46 - 134
Target Start/End: Complemental strand, 14840896 - 14840807
Alignment:
Q  46 ttaattttaacctcaaatgtataagatggaccaacattataagtggtctaccatagaccttatt-aatttttaaattttaaccatttgat 134  Q
    |||| ||||||| ||||||| || | ||||||||||||| ||||| || |||||||  |||||| ||||||| ||||| |||| ||||||    
T  14840896 ttaagtttaaccacaaatgtctatggtggaccaacattaaaagtgatccaccatagttcttattaaattttttaatttaaaccgtttgat 14840807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 74 - 134
Target Start/End: Original strand, 38696455 - 38696516
Alignment:
Q  74 gaccaacattataagtggtctaccatagaccttattaattttta-aattttaaccatttgat 134  Q
    ||||||| ||| |||||||| |||||||| || ||||||||||| |||||||||| ||||||    
T  38696455 gaccaaccttaaaagtggtccaccatagatctaattaatttttataattttaaccctttgat 38696516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 60 - 140
Target Start/End: Original strand, 45279812 - 45279893
Alignment:
Q  60 aaatgtataagatggaccaacattataagtggtctaccatagaccttattaatttt-taaattttaaccatttgatctattt 140  Q
    ||||||||| | |||||||   ||| |||||||||| | ||||||||| ||||||| | ||||||||||||| |||||||||    
T  45279812 aaatgtatatggtggaccagtcttaaaagtggtctatcgtagaccttaataattttgttaattttaaccattcgatctattt 45279893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 79
Target Start/End: Original strand, 28403543 - 28403603
Alignment:
Q  19 tccgtcagtcaaattggtcatgttccgttaattttaacctcaaatgtataagatggaccaa 79  Q
    |||||||||||| ||||||||  ||  ||||||||||| |||||||| |||| ||||||||    
T  28403543 tccgtcagtcaatttggtcatactctcttaattttaacttcaaatgtttaaggtggaccaa 28403603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 55 - 111
Target Start/End: Original strand, 36070303 - 36070359
Alignment:
Q  55 acctcaaatgtataagatggaccaacattataagtggtctaccatagaccttattaa 111  Q
    |||| |||||| |||| || |||||| ||||| |||||| |||||||||||||||||    
T  36070303 accttaaatgtctaaggtgaaccaactttataggtggtccaccatagaccttattaa 36070359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 49; Significance: 4e-19; HSPs: 24)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 50 - 142
Target Start/End: Complemental strand, 19466201 - 19466109
Alignment:
Q  50 ttttaacctcaaatgtataagatggaccaacattataagtggtctaccatagaccttattaatttttaaattttaaccatttgatctattttt 142  Q
    |||||||||||||||| || | ||||| |||||||||  | ||| |||||||||||||||||||||| ||||| | |||||||||||||||||    
T  19466201 ttttaacctcaaatgtctatggtggactaacattatagatagtccaccatagaccttattaattttttaatttcagccatttgatctattttt 19466109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 51 - 142
Target Start/End: Complemental strand, 51300252 - 51300160
Alignment:
Q  51 tttaacctcaaatgtataagatggaccaacattataagtggtctaccatagaccttattaatttt-taaattttaaccatttgatctattttt 142  Q
    |||||||| || |||  ||| ||||||||||||| |||||||| ||||||||||||||||||||| | ||||||||||||||||| |||||||    
T  51300252 tttaaccttaagtgtcaaaggtggaccaacattaaaagtggtccaccatagaccttattaattttatgaattttaaccatttgatatattttt 51300160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 50 - 141
Target Start/End: Original strand, 36509931 - 36510022
Alignment:
Q  50 ttttaacctcaaatgtataagatggaccaacattataagtggtctaccatagaccttattaatttttaaattttaaccatttgatctatttt 141  Q
    |||||||||||||||| || | ||||| |||||||||  |  || |||||||||||||||||||||| ||||||| ||||||||||||||||    
T  36509931 ttttaacctcaaatgtctatggtggactaacattatagatattccaccatagaccttattaattttttaattttagccatttgatctatttt 36510022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 45 - 111
Target Start/End: Complemental strand, 16757522 - 16757456
Alignment:
Q  45 gttaattttaacctcaaatgtataagatggaccaacattataagtggtctaccatagaccttattaa 111  Q
    ||||| ||||||| ||||||| ||||||||||||||||||||||||||| | |||||||||||||||    
T  16757522 gttaactttaaccacaaatgtctaagatggaccaacattataagtggtccatcatagaccttattaa 16757456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 45 - 142
Target Start/End: Complemental strand, 48097030 - 48096932
Alignment:
Q  45 gttaattttaacctcaaatgtataagatggaccaacattataagtggtctaccatagaccttattaatt-tttaaattttaaccatttgatctattttt 142  Q
    ||||| |||||||||||||||||| | ||||||||| |||  |||||||||||||||| | |||||||| ||||||| |||| | |||||||| |||||    
T  48097030 gttaagtttaacctcaaatgtatatggtggaccaaccttaagagtggtctaccatagatcctattaattatttaaatattaatcgtttgatcttttttt 48096932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 45 - 147
Target Start/End: Complemental strand, 15746764 - 15746662
Alignment:
Q  45 gttaattttaacctcaaatgtataagatggaccaacattataagtggtctaccatagaccttattaatttttaaattttaaccatttgatctatttttgc 144  Q
    ||||| |||||| |||||||| || | ||||||||  |||  ||||||| |||||||| | ||||||| ||| |||||||||| |||||||||||||| |    
T  15746764 gttaagtttaacttcaaatgtctatggtggaccaatcttaagagtggtccaccatagatcctattaatcttttaattttaaccctttgatctatttttac 15746665  T
Q  145 aaa 147  Q
    |||    
T  15746664 aaa 15746662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 60 - 140
Target Start/End: Original strand, 16963966 - 16964047
Alignment:
Q  60 aaatgtataagatggaccaacattataagtggtctaccatagaccttattaatttt-taaattttaaccatttgatctattt 140  Q
    |||||| || ||||||||||| ||| |||||||| | ||||||||||||||||||| | |||||||||| || |||||||||    
T  16963966 aaatgtttatgatggaccaaccttaaaagtggtccatcatagaccttattaattttgttaattttaacccttcgatctattt 16964047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 58 - 142
Target Start/End: Complemental strand, 30535654 - 30535570
Alignment:
Q  58 tcaaatgtataagatggaccaacattataagtggtctaccatagaccttattaatttttaaattttaaccatttgatctattttt 142  Q
    |||||||| || | |||||||||||||||  | ||| ||||||||||||||| |||||| |||||||||| | |||||| |||||    
T  30535654 tcaaatgtctatggtggaccaacattatagatagtccaccatagaccttatttattttttaattttaaccctctgatcttttttt 30535570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 51 - 115
Target Start/End: Complemental strand, 38965259 - 38965195
Alignment:
Q  51 tttaacctcaaatgtataagatggaccaacattataagtggtctaccatagaccttattaatttt 115  Q
    ||||| || ||||||||||| | |||||| |||| ||||||||||||||| ||||||||||||||    
T  38965259 tttaatcttaaatgtataaggtagaccaatattaaaagtggtctaccataaaccttattaatttt 38965195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 45 - 136
Target Start/End: Complemental strand, 41873969 - 41873877
Alignment:
Q  45 gttaattttaacctcaaatgtataagatggaccaacattataagtggtctaccatagaccttattaattttt-aaattttaaccatttgatct 136  Q
    ||||| ||||||| ||||||| || | ||||||||| |||  ||||||| ||||||||| | |||||||||| ||||||||||| ||||||||    
T  41873969 gttaagtttaaccacaaatgtctatggtggaccaaccttaagagtggtccaccatagacttcattaattttttaaattttaaccgtttgatct 41873877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 46 - 127
Target Start/End: Complemental strand, 34258709 - 34258627
Alignment:
Q  46 ttaattttaacctcaaatgtataagatggaccaacattataagtggtctaccatagaccttattaattt-ttaaattttaacc 127  Q
    ||||||||||||| |||| | |||| |||||||||||| || | |||| |||||| ||||||||||||| || ||||||||||    
T  34258709 ttaattttaacctaaaatatctaaggtggaccaacattgtatgcggtccaccataaaccttattaatttatttaattttaacc 34258627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 72 - 136
Target Start/End: Complemental strand, 7161294 - 7161229
Alignment:
Q  72 tggaccaacattataagtggtctaccatagaccttattaattttt-aaattttaaccatttgatct 136  Q
    |||||||||||||||  | ||| ||||||||||||| |||||||| |||||||||||||| |||||    
T  7161294 tggaccaacattatagatagtccaccatagaccttaataatttttaaaattttaaccattagatct 7161229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 49 - 110
Target Start/End: Original strand, 47762015 - 47762076
Alignment:
Q  49 attttaacctcaaatgtataagatggaccaacattataagtggtctaccatagaccttatta 110  Q
    |||||||||| |||||||||||||||||||||||  || ||||||||||   ||||||||||    
T  47762015 attttaacctaaaatgtataagatggaccaacatcgtaggtggtctacccgtgaccttatta 47762076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 43 - 142
Target Start/End: Complemental strand, 51042343 - 51042240
Alignment:
Q  43 ccgttaattttaacctcaaatgtataagatggacca---acattataagtggtctaccatagaccttattaattt-ttaaattttaaccatttgatctat 138  Q
    ||||||| | ||||||||||||| || ||||||| |   ||||| || |||||||||||||||||| |||||||| || ||||| |||| |||||||| |    
T  51042343 ccgttaagtataacctcaaatgtctatgatggactacaaacattgtaggtggtctaccatagacctcattaatttgtttaatttaaaccgtttgatcttt 51042244  T
Q  139 tttt 142  Q
    ||||    
T  51042243 tttt 51042240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 50 - 111
Target Start/End: Complemental strand, 51726840 - 51726779
Alignment:
Q  50 ttttaacctcaaatgtataagatggaccaacattataagtggtctaccatagaccttattaa 111  Q
    ||||||||| |||||| |||| || |||||| ||||| |||||| |||||||||||||||||    
T  51726840 ttttaaccttaaatgtctaaggtgaaccaactttataggtggtccaccatagaccttattaa 51726779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 42 - 142
Target Start/End: Original strand, 835390 - 835489
Alignment:
Q  42 tccgttaattttaacctcaaatgtataagatggaccaacattataagtggtctaccatagaccttattaatttttaaattttaaccatttgatctatttt 141  Q
    |||||||| |||||| |||||| | || |||| ||||||||||||  | ||| | |||||||| ||| ||||||| |||||||||| |||||||| ||||    
T  835390 tccgttaactttaacttcaaatatttatgatgaaccaacattatagattgtccatcatagacc-tataaatttttcaattttaaccctttgatctttttt 835488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 59 - 142
Target Start/End: Original strand, 21507197 - 21507280
Alignment:
Q  59 caaatgtataagatggaccaacattataagtggtctaccatagaccttattaatttttaaattttaaccatttgatctattttt 142  Q
    ||||||||| || |||||||||| | || |||||| | | |||||||||||||||||| ||||| | || |||||||| |||||    
T  21507197 caaatgtattaggtggaccaacaatgtaggtggtccatcgtagaccttattaattttttaatttcagccgtttgatcttttttt 21507280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 44 - 113
Target Start/End: Complemental strand, 9226214 - 9226145
Alignment:
Q  44 cgttaattttaacctcaaatgtataagatggaccaacattataagtggtctaccatagaccttattaatt 113  Q
    |||||| ||||||||||||||| || | |||| |||| ||| |||||||| |||||||| | ||||||||    
T  9226214 cgttaaatttaacctcaaatgtctatggtggatcaaccttaaaagtggtccaccatagatcctattaatt 9226145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 50 - 134
Target Start/End: Original strand, 9633895 - 9633980
Alignment:
Q  50 ttttaacctcaaatgtataagatggaccaacattataagtggtctaccatagaccttatt-aatttttaaattttaaccatttgat 134  Q
    ||||||| |||||||| |||| || ||||   ||| | |||||| ||||||||||||||| |||||||||||||| ||| ||||||    
T  9633895 ttttaacatcaaatgtctaaggtgaaccatgtttaaaggtggtccaccatagaccttattaaatttttaaattttgaccctttgat 9633980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 50 - 111
Target Start/End: Original strand, 21277114 - 21277175
Alignment:
Q  50 ttttaacctcaaatgtataagatggaccaacattataagtggtctaccatagaccttattaa 111  Q
    |||| |||| |||||| |||| || |||||| ||||| |||||| |||||||||||||||||    
T  21277114 ttttgaccttaaatgtctaaggtgaaccaactttataggtggtccaccatagaccttattaa 21277175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 51 - 111
Target Start/End: Original strand, 8092719 - 8092779
Alignment:
Q  51 tttaacctcaaatgtataagatggaccaacattataagtggtctaccatagaccttattaa 111  Q
    |||||||| |||| | |||| || |||||| ||||| |||||| |||||||||||||||||    
T  8092719 tttaaccttaaatatctaaggtgaaccaactttataggtggtccaccatagaccttattaa 8092779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 50 - 142
Target Start/End: Complemental strand, 13642553 - 13642461
Alignment:
Q  50 ttttaacctcaaatgtataagatggaccaacattataagtggtctaccatagaccttattaatttttaaattttaaccatttgatctattttt 142  Q
    ||||||||| |||||| |||| ||||| ||| ||| | ||||||||||||| || |||||||  |||  | ||||||| |||||||| |||||    
T  13642553 ttttaaccttaaatgtctaaggtggacgaactttacaggtggtctaccataaactttattaaaatttttaatttaaccgtttgatcttttttt 13642461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 106 - 162
Target Start/End: Original strand, 15743416 - 15743471
Alignment:
Q  106 tattaatttttaaattttaaccatttgatctatttttgcaaacaagaaccgttggat 162  Q
    ||||||||||||| |||||||| |||||||||||||| ||||  ||||| |||||||    
T  15743416 tattaatttttaa-ttttaaccctttgatctattttttcaaaagagaacggttggat 15743471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 45 - 141
Target Start/End: Original strand, 46467264 - 46467360
Alignment:
Q  45 gttaattttaacctcaaatgtataagatggaccaacattataagtggtctaccatagaccttattaatttttaaattttaaccatttgatctatttt 141  Q
    ||||| |||||||  |||||| || | ||||||||||||| ||||| || ||| ||||  ||||||| |||| ||||| |||| |||||| ||||||    
T  46467264 gttaagtttaaccataaatgtctatggtggaccaacattaaaagtgatccaccgtagatgttattaaatttttaatttaaaccgtttgatatatttt 46467360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold2071 (Bit Score: 45; Significance: 9e-17; HSPs: 1)
Name: scaffold2071
Description:

Target: scaffold2071; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 51 - 142
Target Start/End: Complemental strand, 673 - 581
Alignment:
Q  51 tttaacctcaaatgtataagatggaccaacattataagtggtctaccatagaccttatt-aatttttaaattttaaccatttgatctattttt 142  Q
    ||||||||||||||||||  |||||||||| |||  ||||||| ||||||||||||||| ||||||| ||||| |||| |||||||| |||||    
T  673 tttaacctcaaatgtatataatggaccaaccttaagagtggtccaccatagaccttattaaattttttaatttaaaccgtttgatctgttttt 581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0178 (Bit Score: 45; Significance: 9e-17; HSPs: 1)
Name: scaffold0178
Description:

Target: scaffold0178; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 50 - 142
Target Start/End: Original strand, 1331 - 1422
Alignment:
Q  50 ttttaacctcaaatgtataagatggaccaacattataagtggtctaccatagaccttattaatttttaaattttaaccatttgatctattttt 142  Q
    ||||||||| |||||| |||| || |||||| ||||||| | |||||||||||| |||||||||||| |||||||||| |||||||| |||||    
T  1331 ttttaaccttaaatgtttaaggtgaaccaactttataag-gatctaccatagactttattaattttttaattttaaccgtttgatcttttttt 1422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0148 (Bit Score: 45; Significance: 9e-17; HSPs: 1)
Name: scaffold0148
Description:

Target: scaffold0148; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 46 - 142
Target Start/End: Original strand, 14820 - 14916
Alignment:
Q  46 ttaattttaacctcaaatgtataagatggaccaacattataagtggtctaccatagaccttattaatttttaaattttaaccatttgatctattttt 142  Q
    |||| ||||||||| ||||| || |||||||||| ||||||  || || ||||||||| |||||||||||| ||||| | |||||||||||||||||    
T  14820 ttaactttaacctctaatgtctatgatggaccaatattatagatgatccaccatagacattattaattttttaatttaagccatttgatctattttt 14916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0034 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 1)
Name: scaffold0034
Description:

Target: scaffold0034; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 46 - 140
Target Start/End: Complemental strand, 109743 - 109648
Alignment:
Q  46 ttaattttaacctcaaatgtataagatggaccaacattataagtggtctaccatagaccttattaatttt-taaattttaaccatttgatctattt 140  Q
    |||| |||||| ||||||||||| | ||||||||| ||| || | ||| | | ||||||||||||||||| | |||||||||||||||||||||||    
T  109743 ttaactttaacttcaaatgtatatggtggaccaaccttaaaaatagtccatcgtagaccttattaattttgttaattttaaccatttgatctattt 109648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0031 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: scaffold0031
Description:

Target: scaffold0031; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 62 - 135
Target Start/End: Complemental strand, 125212 - 125137
Alignment:
Q  62 atgtataagatggaccaacattataagtggtctaccatagaccttattaa--tttttaaattttaaccatttgatc 135  Q
    ||||||| ||||||||||| ||| |||||||| |||||||||||||||||  ||||| ||||| |||| |||||||    
T  125212 atgtatatgatggaccaaccttaaaagtggtccaccatagaccttattaaatttttttaatttaaaccctttgatc 125137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0018 (Bit Score: 37; Significance: 0.000000000005; HSPs: 2)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 45 - 136
Target Start/End: Complemental strand, 152058 - 151966
Alignment:
Q  45 gttaattttaacctcaaatgtataagatggaccaacattataagtggtctaccatagaccttatta-atttttaaattttaaccatttgatct 136  Q
    |||||||||||||  |||| | |||||| ||||||||||||| |||||| |||| |||||| || | |||||||| |||||||| ||||||||    
T  152058 gttaattttaacccaaaatatttaagatagaccaacattataggtggtccaccaaagacctcatcagatttttaatttttaaccgtttgatct 151966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0018; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 44 - 140
Target Start/End: Original strand, 151452 - 151549
Alignment:
Q  44 cgttaattttaacctcaaatgtataagatggaccaacattataagtggtctaccatagaccttatt-aatttttaaattttaaccatttgatctattt 140  Q
    ||||||||||||| | ||||||  |||||||||||||||| || || ||| |||| ||| ||  || ||||||||| | ||||||| |||||||||||    
T  151452 cgttaattttaacttaaaatgttcaagatggaccaacattgtaggtagtcaaccaaagatctggttcaatttttaattcttaaccaattgatctattt 151549  T

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Target: scaffold0128 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0128
Description:

Target: scaffold0128; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 72 - 142
Target Start/End: Original strand, 22125 - 22196
Alignment:
Q  72 tggaccaacattataagtggtctaccatagaccttattaattt-ttaaattttaaccatttgatctattttt 142  Q
    |||||||||||| || |||||| |||||||||| ||||||||| || ||||| ||||||||||| |||||||    
T  22125 tggaccaacattgtaggtggtccaccatagaccctattaatttctttaatttaaaccatttgatttattttt 22196  T

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Target: scaffold0122 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0122
Description:

Target: scaffold0122; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 50 - 111
Target Start/End: Original strand, 16065 - 16126
Alignment:
Q  50 ttttaacctcaaatgtataagatggaccaacattataagtggtctaccatagaccttattaa 111  Q
    ||||||||| |||||| ||||||| |||||| |||||  ||||| |||||||||||||||||    
T  16065 ttttaaccttaaatgtctaagatgaaccaactttatagatggtccaccatagaccttattaa 16126  T

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Target: scaffold0201 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0201
Description:

Target: scaffold0201; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 45 - 136
Target Start/End: Original strand, 21245 - 21337
Alignment:
Q  45 gttaattttaacctcaaatgtataagatggaccaacattataagtggtctaccatagaccttattaatttt-taaattttaaccatttgatct 136  Q
    ||||| ||||||| ||||||| || | ||||||||| ||   ||||||| ||||||||| | ||||||||| |||||||||||| ||||||||    
T  21245 gttaagtttaaccacaaatgtctatggtggaccaaccttcagagtggtccaccatagacttcattaattttttaaattttaaccgtttgatct 21337  T

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Target: scaffold0077 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0077
Description:

Target: scaffold0077; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 45 - 140
Target Start/End: Original strand, 52709 - 52805
Alignment:
Q  45 gttaattttaacctcaaatgtataagatggaccaacattataagtggtctaccatagaccttattaatttt-taaattttaaccatttgatctattt 140  Q
    ||||| |||||| | ||||||||| | ||||||||| ||| || |||||||   ||||||||||||||||| | ||||||| || || |||||||||    
T  52709 gttaactttaactttaaatgtatatggtggaccaaccttaaaaatggtctatggtagaccttattaattttcttaattttatccgttcgatctattt 52805  T

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