View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2610_high_33 (Length: 232)
Name: NF2610_high_33
Description: NF2610
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2610_high_33 |
 | |
|
| [»] chr1 (1 HSPs) |
| |
|
Alignment Details
Target: chr1 (Bit Score: 215; Significance: 1e-118; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 6 - 232
Target Start/End: Complemental strand, 38577814 - 38577588
Alignment:
| Q |
6 |
aataaatcaacaaataaaagatgataggaaccaaggaataataaaaacagattataagccagggaagaggcagtgcatgagtggagccacgacagtttcc |
105 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
38577814 |
aataaatcaacaaataaaagatgataggaaccaaggaataataaaaacagattataagccagggaagaggcagtgcatgagtggagccacaacagtttcc |
38577715 |
T |
|
| Q |
106 |
ttcactgtcgatagtttcatccatgctctgcatgttccctgtctttgtcctgtcattaactattaatcccagtcccaaacttttttacatctaaattaca |
205 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38577714 |
ttcactgtcgatagtttcatccatgctctgcatgttccctgtctttgtcctgtcattaactattaatcccagtcccaaacttttttacatctaaattaca |
38577615 |
T |
|
| Q |
206 |
ttaccttacctcatacttgtcaacacc |
232 |
Q |
| |
|
|||||||||||| | |||||||||||| |
|
|
| T |
38577614 |
ttaccttacctcgtgcttgtcaacacc |
38577588 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University