View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2610_high_4 (Length: 608)
Name: NF2610_high_4
Description: NF2610
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2610_high_4 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 561; Significance: 0; HSPs: 27)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 561; E-Value: 0
Query Start/End: Original strand, 19 - 595
Target Start/End: Original strand, 22621181 - 22621757
Alignment:
| Q |
19 |
ccttcaacatgtatctcagcaacccctctatattgtatgattgtgacactgtgacccatacacgatattcgaagtgtcccatgacctctttgctgtcgaa |
118 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22621181 |
ccttcaacatgtatctcagcaacccctctatatcgtatgattgtgacactgtgacccatacacgatattcgaagtgtcccatgacctctttgctgtcgaa |
22621280 |
T |
|
| Q |
119 |
aacctttttggcaagagtggattttccttgtcctcccattcctaccacagagatgacagtgcgctcttctcttccatccaccaacaatccaatcaatcta |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22621281 |
aacctttttggcaagagtggattttccttgtcctcccattcctaccacagagatgacagttcgctcttctcttccatccaccaacaatccaatcaatcta |
22621380 |
T |
|
| Q |
219 |
tttttgggttcttgaaagcctacaatttcaaattcatcaatatataaagcagccattcgagggtcatgccatttcgccttttggcttcctctaaagtggc |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22621381 |
tttttgggttcttgaaagcctacaatttcagattcatcaatatataaagcagccattcgagggtcatgccatttcgccttttggcttcctctaaagtggc |
22621480 |
T |
|
| Q |
319 |
ttgatccttgttcaatagaaggttggatttggaagccatacctttcacttctttccttgatcccatgcacagatgacttaatgccttgaatcttggacgc |
418 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22621481 |
ttgatccttgttcaatagaaggttggatttggaagccatacctttcacttctttccttgatcccatgcacagatgacttaatgccttgaatcttggacgc |
22621580 |
T |
|
| Q |
419 |
tattcgatggcgagggatcatagttttgactaagtgactaatattatggagtaaagccatacacccaagattacgaggatgttgtctcacatggatcata |
518 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
22621581 |
tattcgatggcgagggatcatagttttgactaagtgactaatattatggagtaaagccatacacccaagattacgaggctgttgtctcacatggatcata |
22621680 |
T |
|
| Q |
519 |
taatcatcaatgatgtcttctatgcgaaaggttgtttctctaacttgtttcacccatgttttgactccttcactagt |
595 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22621681 |
taatcatcaatgatgtcttctatgcgaaaggttgtttctctaacttgtttcacccatgttttgactccttcactagt |
22621757 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 19 - 592
Target Start/End: Original strand, 22657333 - 22657906
Alignment:
| Q |
19 |
ccttcaacatgtatctcagcaacccctctatattgtatgattgtgacactgtgacccatacacgatattcgaagtgtcccatgacctctttgctgtcgaa |
118 |
Q |
| |
|
||||||||||| ||||| |||| | ||||||||||| |||||||||||||||| ||| |||||| |||| |||||||| | |||||||||||||| || |
|
|
| T |
22657333 |
ccttcaacatgcgtctcaacaacacttctatattgtaagattgtgacactgtgatccaaacacgacattcaaagtgtccaacaacctctttgctgtcaaa |
22657432 |
T |
|
| Q |
119 |
aacctttttggcaagagtggattttccttgtcctcccattcctaccacagagatgacagtgcgctcttctcttccatccaccaac-aatccaatcaatct |
217 |
Q |
| |
|
||| ||||| |||||||| | ||||||||| ||||||||||| || ||||| ||||||||||||||| |||||| | |||||| |||| | | ||||| |
|
|
| T |
22657433 |
aacttttttagcaagagtagtttttccttgccctcccattcccacgacagatatgacagtgcgctctgatcttccctttaccaaccaatctact-aatct |
22657531 |
T |
|
| Q |
218 |
atttttgggttcttgaaagcctacaatttcaaattcatcaatatataaagcagccattcgagggtcatgccatttcgccttttggcttcctctaaagtgg |
317 |
Q |
| |
|
||||||||| |||||||||||| |||||| ||||||||| |||||||||||||||||||||||||||||||| || ||||||||||||||||| |
|
|
| T |
22657532 |
ttttttgggtgcttgaaagcctataatttccgcttcatcaatgtataaagcagccattcgagggtcatgccatttggcagtttggcttcctctaaagctt |
22657631 |
T |
|
| Q |
318 |
cttgatccttgttcaatagaaggttggatttggaagccatacctttcacttctttccttgatcccatgcacagatgacttaatgccttgaatcttggacg |
417 |
Q |
| |
|
| |||||||||| | |||||||||||||||||| ||||| |||||||||||||| ||||||||| ||| |||||||||| ||||||||||| ||| |
|
|
| T |
22657632 |
gtagatccttgttgagaagaaggttggatttggaaaccatatctttcacttctttctttgatcccacaaacaaatgacttaatctcttgaatcttgaacg |
22657731 |
T |
|
| Q |
418 |
ctattcgatggcgagggatcatagttttgactaagtgactaatattatggagtaaagccatacacccaagattacgaggatgttgtctcacatggatcat |
517 |
Q |
| |
|
||||| || |||||| |||||||||||| |||||| ||||| |||||||| || | || | || |||||| || || | |||||||||||| |
|
|
| T |
22657732 |
ctatttgacggcgagaattcatagttttgagcaagtgaggaatatcatggagtagagaaacgcatcgggaatcacgaggttgctgccccacatggatcat |
22657831 |
T |
|
| Q |
518 |
ataatcatcaatgatgtcttctatgcgaaaggttgtttctctaacttgtttcacccatgttttgactccttcact |
592 |
Q |
| |
|
|||||||||||||| |||||||||||||| | | |||| ||||| || |||||||| ||||| |||||||||| |
|
|
| T |
22657832 |
ataatcatcaatgacatcttctatgcgaaaagctatttccctaacctgcttcacccacattttggctccttcact |
22657906 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 143; E-Value: 8e-75
Query Start/End: Original strand, 21 - 590
Target Start/End: Original strand, 22648427 - 22648997
Alignment:
| Q |
21 |
ttcaacatgtatctcagcaacccctctatattgtatgattgtgacactgtgacccatacacgatattcgaagtgtcccatgacctctttgctgtcgaaaa |
120 |
Q |
| |
|
||||||||| |||||||||||| ||| ||| ||||||||| ||||| ||| |||||||||| |||| ||||||||| |||||||||||||| || | |
|
|
| T |
22648427 |
ttcaacatgcctctcagcaacccttctgtatagtatgattgcaacactttgatccatacacgaaattcaaagtgtcccgctacctctttgctgtcaaaca |
22648526 |
T |
|
| Q |
121 |
cctttttggcaagagtggattttccttgtcctcccattcctaccacagagatgacagtgcgctcttctcttccatccaccaacaatccaatcaatctatt |
220 |
Q |
| |
|
| ||| |||||||||||| ||||||| | |||||||| ||||||||||||||||||||||||||| |||||| || |||||| | ||||||| | || |
|
|
| T |
22648527 |
cttttctggcaagagtggtttttcctagccctcccatacctaccacagagatgacagtgcgctctgatcttccctctaccaaccaaccaatcatttgttt |
22648626 |
T |
|
| Q |
221 |
tttgggttcttgaaagcctacaatttcaaattcatcaatatataaagcagccattcgagggtcatgccatttcgccttttggcttcctctaaagtggctt |
320 |
Q |
| |
|
| | ||| |||||| |||||| ||||| |||| |||| |||||||||||| ||||||||||||||||||| | ||||||||| ||| ||| ||| |
|
|
| T |
22648627 |
tcttggtgcttgaaggcctaccatttctgcttcaccaatgtataaagcagccgttcgagggtcatgccatttaacattttggctttttctgaagcttctt |
22648726 |
T |
|
| Q |
321 |
gatccttgttcaatagaaggttggatttggaagccatacctttcacttctttccttgatcccatgcacagatgacttaatgccttgaatcttggacgcta |
420 |
Q |
| |
|
||| |||||||| ||||||| ||||||||| |||| || | ||| |||||||||| ||| | | | || |||||||| ||||||||| ||| || | |
|
|
| T |
22648727 |
gattcttgttcattagaaggcaagatttggaactcatatctgtggcttttttccttgattccacgaataaataacttaatgtcttgaatctcggatgcaa |
22648826 |
T |
|
| Q |
421 |
ttcgatggcgagggatcatagttttgactaagtgactaatattatggagtaaagccatacacccaagattacgaggatgttgtctcacatggatcatata |
520 |
Q |
| |
|
|| |||||||| |||| ||||||| ||||| | ||| |||||||||||||| | ||| || |||| |||||| || ||| || || ||||||||| |
|
|
| T |
22648827 |
tttgatggcgatctttcattgttttgagtaagtaagcaatcttatggagtaaagctagacatccgagatcacgaggctgctgttccatatagatcatata |
22648926 |
T |
|
| Q |
521 |
atcatcaatgatgtc-ttctatgcgaaaggttgtttctctaacttgtttcacccatgttttgactccttca |
590 |
Q |
| |
|
|||||||||||| || ||||||||| || | || |||||||| ||| |||||||| | ||||||||||||| |
|
|
| T |
22648927 |
atcatcaatgatatctttctatgcggaaagctgcttctctaagttgcttcacccacgatttgactccttca |
22648997 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 118; E-Value: 7e-60
Query Start/End: Original strand, 63 - 595
Target Start/End: Complemental strand, 22104878 - 22104352
Alignment:
| Q |
63 |
gacactgtgacccatacacgatattcgaagtgtcccatgacctctttgctgtcgaaaacctttttggcaagagtggattttccttgtcctcccattccta |
162 |
Q |
| |
|
|||||||||| ||| ||| || | || |||||||| || || || |||||||| ||||| | ||||| ||||| | ||||||||| ||||||||||||| |
|
|
| T |
22104878 |
gacactgtgatccaaacatgacaatcaaagtgtccaattacatccttgctgtcaaaaactctcttggctagagttgtttttccttgccctcccattccta |
22104779 |
T |
|
| Q |
163 |
ccacagagatgacagtgcgctcttctcttccatccaccaacaatccaatcaatctatttttgggttcttgaaagcctacaatttcaaattcatcaatata |
262 |
Q |
| |
|
|||| || | |||||||||||||| |||| | |||| | | |||||||||| ||| | ||| ||| || || |||| ||| ||| ||||| || |
|
|
| T |
22104778 |
ccaccgaaactacagtgcgctcttccgttccctttaccatccaatcaatcaatctttttcttggtgctttgaatcccacaacatcagcttcctcaatgta |
22104679 |
T |
|
| Q |
263 |
taaagcagccattcgagggtcatgccatttcgccttttggcttcctctaaagtggcttgatccttgttcaatagaaggttggatttggaagccatacctt |
362 |
Q |
| |
|
| |||||| | ||||||||| |||||||| || ||| || || |||| | ||||||||||||||||| ||||||||||| ||||||| | | |
|
|
| T |
22104678 |
aagagcagcaactcgagggtcgtgccatttggcatttcggttttctcttgaactgcttgatccttgttcaaaagaaggttgga------agccatatcgt |
22104585 |
T |
|
| Q |
363 |
tcacttctttccttgatcccatgcacagatgacttaatgccttgaatcttggacgctattcgatggcgagggatcatagttttgactaagtgactaatat |
462 |
Q |
| |
|
||||||||||||||||||||| | ||||||||||||| ||||||||| | |||||||||||||||||| |||||||||||| ||||||| ||| | |
|
|
| T |
22104584 |
tcacttctttccttgatcccacgaacagatgacttaacatcttgaatctcagctgctattcgatggcgaggggtcatagttttgagtaagtgagcaatct |
22104485 |
T |
|
| Q |
463 |
tatggagtaaagccatacacccaagattacgaggatgttgtctcacatggatcatataatcatcaatgatgtcttctatgcgaaaggttgtttctctaac |
562 |
Q |
| |
|
||| |||| ||| | ||| ||| ||| |||||| || |||| |||||||||||||| ||||||||||| |||||||||||||| | || | | |||| |
|
|
| T |
22104484 |
tatcaagtatagctacacatccaggatcacgaggctgctgtcctacatggatcatatactcatcaatgatatcttctatgcgaaaagctgctaccctaag |
22104385 |
T |
|
| Q |
563 |
ttgtttcacccatgttttgactccttcactagt |
595 |
Q |
| |
|
||| ||||||||||||||||||||||||||||| |
|
|
| T |
22104384 |
ttgcttcacccatgttttgactccttcactagt |
22104352 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 54 - 595
Target Start/End: Complemental strand, 22179581 - 22179046
Alignment:
| Q |
54 |
tatgattgtgacactgtgacccatacacgatattcgaagtgtcccatgacctctttgctgtcgaaaacctttttggcaagagtggattttccttgtcctc |
153 |
Q |
| |
|
|||||||| |||||||| | |||||||||| | || |||||||| |||| || |||||||| ||||| || ||||| ||||| | ||||||||| |||| |
|
|
| T |
22179581 |
tatgattgagacactgtaatccatacacgacaatcaaagtgtccaatgatatccttgctgtcaaaaactttcttggctagagttgtttttccttgccctc |
22179482 |
T |
|
| Q |
154 |
ccattcctaccacagagatgacagtgcgctcttctcttccatccaccaacaatccaatcaatctatttttgggttcttgaaagcctacaatttcaaattc |
253 |
Q |
| |
|
||||||| ||||| | | ||||||||||||| ||||| | |||| | | |||||||||| ||| | || ||| ||| || |||| ||| ||| |
|
|
| T |
22179481 |
ccattcccaccacgaataccacagtgcgctctttccttccctgtaccatccaatcaatcaatctttttcttggcgcttcaaatcccacaacctcagcttc |
22179382 |
T |
|
| Q |
254 |
atcaatatataaagcagccattcgagggtcatgccatttcgccttttggcttcctctaaagtggcttgatccttgttcaatagaaggttggatttggaag |
353 |
Q |
| |
|
|| | || | ||||||| |||||||||| |||||||| | || |||||||||| | | ||||| |||||||||| |||| |||||| || |
|
|
| T |
22179381 |
ctcgacgtaaagagcagcctttcgagggtcgtgccatttggtattcctgcttcctctagaattgcttgtgccttgttcaaaagaacgttgga------ag |
22179288 |
T |
|
| Q |
354 |
ccatacctttcacttctttccttgatcccatgcacagatgacttaatgccttgaatcttggacgctattcgatggcgagggatcatagttttgactaagt |
453 |
Q |
| |
|
||||| | ||||||||||||||||||| | | ||||||||||||||| ||||||||| | ||||||||||||||| || |||| ||||||| ||||| |
|
|
| T |
22179287 |
ccatatttatcacttctttccttgatcctacgaacagatgacttaatgtcttgaatctcagctgctattcgatggcgacgggtcatggttttgagtaagt |
22179188 |
T |
|
| Q |
454 |
gactaatattatggagtaaagccatacacccaagattacgaggatgttgtctcacatggatcatataatcatcaatgatgtcttctatgcgaaaggttgt |
553 |
Q |
| |
|
|| |||| |||| | || ||| | ||| ||| ||| |||||| ||||||| |||||||||| ||||||||||||||| |||||||||||||| | || |
|
|
| T |
22179187 |
gagtaatcttatcaaatacagctacacatccaggatcacgaggttgttgtccaacatggatcaaataatcatcaatgatatcttctatgcgaaaagctgc |
22179088 |
T |
|
| Q |
554 |
ttctctaacttgtttcacccatgttttgactccttcactagt |
595 |
Q |
| |
|
| | |||| ||| ||||||||||||||||||||||||||||| |
|
|
| T |
22179087 |
taccctaagttgcttcacccatgttttgactccttcactagt |
22179046 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 54 - 590
Target Start/End: Original strand, 30989607 - 30990125
Alignment:
| Q |
54 |
tatgattgtgacactgtgacccatacacgatattcgaagtgtcccatgacctctttgctgtcgaaaacctttttggcaagagtggattttccttgtcctc |
153 |
Q |
| |
|
|||||||| |||||| ||| |||||||||| | || |||||||| ||||| | || |||| ||||| || || | |||||||| ||| ||||| |||| |
|
|
| T |
30989607 |
tatgattgagacactatgatccatacacgacaatcaaagtgtccaatgacattcctgttgtcaaaaactttcttcgtaagagtggttttaccttgccctc |
30989706 |
T |
|
| Q |
154 |
ccattcctaccacagagatgacagtgcgctcttctcttccatccaccaacaatccaatcaatctatttttgggttcttgaaagcctacaatttcaaattc |
253 |
Q |
| |
|
|||| ||||| ||||| || || |||||||| |||||||| | |||||| | ||||||| | | | | || || | |||| |||| |||| ||| |
|
|
| T |
30989707 |
ccatgcctactacagaaattaccgtgcgctcatctcttccctttaccaaccaatcaatcaacatgtctctctgtgtttcatagcccacaacttcagcttc |
30989806 |
T |
|
| Q |
254 |
atcaatatataaagcagccattcgagggtcatgccatttcgccttttggcttcctctaaagtggcttgatccttgttcaatagaaggttggatttggaag |
353 |
Q |
| |
|
|||| || | ||||||| |||||| || ||||| || || || |||||||||||| | | ||||||||||||||||| |||| |||||| || |
|
|
| T |
30989807 |
ctcaacgtaaagagcagccgctcgaggatcgtgccacttagcattctggcttcctctagaattgcttgatccttgttcaaaagaacgttgga------ag |
30989900 |
T |
|
| Q |
354 |
ccatacctttcacttctttccttgatcccatgcacagatgacttaatgccttgaatcttggacgctattcgatggcgagggatcatagttttgactaagt |
453 |
Q |
| |
|
||||| ||||||||||||||||||||| || | ||||| ||||||||| ||||||||| || ||||||||| | |||||||||| |||||| |
|
|
| T |
30989901 |
ccatatctttcacttctttccttgatctcacgaacagacgacttaatgtcttgaatctcagatgctattcgacgacgagggatcacagtttt-------- |
30989992 |
T |
|
| Q |
454 |
gactaatattatggagtaaagccatacacccaagattacgaggatgttgtctcacatggatcatataatcatcaatgatgtcttctatgcgaaaggttgt |
553 |
Q |
| |
|
||| || |||||||||| | ||| ||| ||| | |||||||||||||||||||||||| ||||||||| ||||| |||||||||||||| | || |
|
|
| T |
30989993 |
----aatcttgtggagtaaagatacacatccaggatcatgaggatgttgtctcacatggatcaaataatcatcgatgatatcttctatgcgaaaagctgc |
30990088 |
T |
|
| Q |
554 |
ttctctaacttgtttcacccatgttttgactccttca |
590 |
Q |
| |
|
||| ||||| || |||||||||||||||||||||||| |
|
|
| T |
30990089 |
ttccctaacctgcttcacccatgttttgactccttca |
30990125 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 54 - 591
Target Start/End: Complemental strand, 22034681 - 22034162
Alignment:
| Q |
54 |
tatgattgtgacactgtgacccatacacgatattcgaagtgtcccatgacctctttgctgtcgaaaacctttttggcaagagtggattttccttgtcctc |
153 |
Q |
| |
|
|||||||| |||||||| | |||||||||||| || ||||||||||||| || |||||||| ||||| || ||||| ||||| | ||||||||| |||| |
|
|
| T |
22034681 |
tatgattgagacactgtaatccatacacgataatcaaagtgtcccatgatatccttgctgtcaaaaactttcttggctagagttgtttttccttgccctc |
22034582 |
T |
|
| Q |
154 |
ccattcctaccacagagatgacagtgcgctcttctcttccatccaccaacaatccaatcaatctatttttgggttcttgaaagcctacaatttcaaattc |
253 |
Q |
| |
|
|||||||||||||||| | |||||||||||||| ||||| | |||| | | |||||||||| | | | ||| ||| ||| || |||| ||| ||| |
|
|
| T |
22034581 |
ccattcctaccacagacaccacagtgcgctcttcccttccctgtaccatccaatcaatcaatctttgtcttggtgcttcaaatcccacaacctcagtttc |
22034482 |
T |
|
| Q |
254 |
atcaatatataaagcagccattcgagggtcatgccatttcgccttttggcttcctctaaagtggcttgatccttgttcaatagaaggttggatttggaag |
353 |
Q |
| |
|
|||| || | |||||| | ||||||||| |||||||| || || ||||||||| | | ||||| ||||||||||| |||| | ||||||| |
|
|
| T |
22034481 |
ctcaacgtaaagagcagcgactcgagggtcgtgccatttggcattcctacttcctctagaattgcttgttccttgttcaaaagaacg------ttggaag |
22034388 |
T |
|
| Q |
354 |
ccatacctttcacttctttccttgatcccatgcacagatgacttaatgccttgaatcttggacgctattcgatggcgagggatcatagttttgactaagt |
453 |
Q |
| |
|
||||| |||||||||||||| |||||||| | ||||||| ||||| |||| |||| || ||||||||| | |||||||||||||||||| |
|
|
| T |
22034387 |
ccatatctttcacttctttctgtgatcccacgaacagatgtcttaacatcttgtatctcagatgctattcgacgacgagggatcatagttttg------- |
22034295 |
T |
|
| Q |
454 |
gactaatattatggagtaaagccatacacccaagattacgaggatgttgtctcacatggatcatataatcatcaatgatgtcttctatgcgaaaggttgt |
553 |
Q |
| |
|
| ||||| |||||| | ||||| ||| ||| ||||| || |||| | ||||||| ||||||||||||||| |||||||||||||| | || |
|
|
| T |
22034294 |
-----agcttatgaagtaaatctatacatccaggatctcgaggttgctgtcctaactggatcaaataatcatcaatgatatcttctatgcgaaaagctgc |
22034200 |
T |
|
| Q |
554 |
ttctctaacttgtttcacccatgttttgactccttcac |
591 |
Q |
| |
|
|| |||| ||| ||||||||| ||||||||||||||| |
|
|
| T |
22034199 |
ctccctaagttgcttcacccatattttgactccttcac |
22034162 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 363 - 593
Target Start/End: Complemental strand, 21937014 - 21936784
Alignment:
| Q |
363 |
tcacttctttccttgatcccatgcacagatgacttaatgccttgaatcttggacgctattcgatggcgagggatcatagttttgactaagtgactaatat |
462 |
Q |
| |
|
||||||||||||||||||||| | ||||||||||||||| ||||||||| | |||||||||||||||| | |||| ||| ||| ||||||| ||||| |
|
|
| T |
21937014 |
tcacttctttccttgatcccacgaacagatgacttaatgtcttgaatctcagctgctattcgatggcgagaggtcatggttctgagtaagtgagaaatat |
21936915 |
T |
|
| Q |
463 |
tatggagtaaagccatacacccaagattacgaggatgttgtctcacatggatcatataatcatcaatgatgtcttctatgcgaaaggttgtttctctaac |
562 |
Q |
| |
|
|||| |||||||| | ||| ||| || | |||| | |||| |||||||||||||| ||||||||||| |||||||||| ||| | || ||| |||| |
|
|
| T |
21936914 |
tatgaagtaaagctacacatccatgaccatgaggcttctgtcctacatggatcatatattcatcaatgatatcttctatgcaaaaagctgcttccctaag |
21936815 |
T |
|
| Q |
563 |
ttgtttcacccatgttttgactccttcacta |
593 |
Q |
| |
|
|| |||||||| ||||| |||||||||||| |
|
|
| T |
21936814 |
ctgcttcacccaagttttaactccttcacta |
21936784 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 54 - 447
Target Start/End: Complemental strand, 22115249 - 22114862
Alignment:
| Q |
54 |
tatgattgtgacactgtgacccatacacgatattcgaagtgtcccatgacctctttgctgtcgaaaacctttttggcaagagtggattttccttgtcctc |
153 |
Q |
| |
|
|||||||| |||||||||| |||||||||| | || |||||||| |||| || |||||||| ||||| || || | ||||||| ||||||||| |||| |
|
|
| T |
22115249 |
tatgattgagacactgtgatccatacacgacaatcaaagtgtccaatgatatccttgctgtcaaaaactttctttgatagagtggtttttccttgccctc |
22115150 |
T |
|
| Q |
154 |
ccattcctaccacagagatgacagtgcgctcttctcttccatccaccaacaatccaatcaatctatttttgggttcttgaaagcctacaatttcaaattc |
253 |
Q |
| |
|
|||||||||||||||| | |||||||||||||| ||||| | |||| | | |||||||||| | | | ||| ||| ||| || |||| ||| ||| |
|
|
| T |
22115149 |
ccattcctaccacagaaagaacagtgcgctcttcccttccctataccatccaatcaatcaatctttgtcttggtgcttcaaatcccacaacctcagcttc |
22115050 |
T |
|
| Q |
254 |
atcaatatataaagcagccattcgagggtcatgccatttcgccttttggcttcctctaaagtggcttgatccttgttcaatagaaggttggatttggaag |
353 |
Q |
| |
|
|||| || | |||||||| ||||||||| |||||||| || || ||||||||| | | ||||| ||||||||||| |||| | ||||||| |
|
|
| T |
22115049 |
ctcaacgtaaagagcagccactcgagggtcgtgccatttggcattcctacttcctctagaattgcttgttccttgttcaaaagaacg------ttggaag |
22114956 |
T |
|
| Q |
354 |
ccatacctttcacttctttccttgatcccatgcacagatgacttaatgccttgaatcttggacgctattcgatggcgagggatcatagttttga |
447 |
Q |
| |
|
||||| |||||||||||||| |||||||| | ||||||| ||||| |||| |||| || ||||||||| | ||||||||||||||||||| |
|
|
| T |
22114955 |
ccatatctttcacttctttctgtgatcccacgaacagatgtcttaaaatcttgtatctcagatgctattcgacgacgagggatcatagttttga |
22114862 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 54 - 592
Target Start/End: Complemental strand, 22187152 - 22186632
Alignment:
| Q |
54 |
tatgattgtgacactgtgacccatacacgatattcgaagtgtcccatgacctctttgctgtcgaaaacctttttggcaagagtggattttccttgtcctc |
153 |
Q |
| |
|
|||||||| |||||||| | |||||||||| | || ||||||||||||| || |||||||| ||||| || ||||| ||||| | ||||||||| |||| |
|
|
| T |
22187152 |
tatgattgagacactgtaatccatacacgacaatcaaagtgtcccatgatatccttgctgtcaaaaactttcttggctagagttgtttttccttgccctc |
22187053 |
T |
|
| Q |
154 |
ccattcctaccacagagatgacagtgcgctcttctcttccatccaccaacaatccaatcaatctatttttgggttcttgaaagcctacaatttcaaattc |
253 |
Q |
| |
|
|||||||||||||||| | |||||||||||||| ||||| | |||| | | |||||||||| ||| | || ||| ||| || |||| ||| ||| |
|
|
| T |
22187052 |
ccattcctaccacagaaagaacagtgcgctcttcccttccctttaccatccactcaatcaatctttttcttggcgcttcaaatcccacaacctcagcttc |
22186953 |
T |
|
| Q |
254 |
atcaatatataaagcagccattcgagggtcatgccatttcgccttttggcttcctctaaagtggcttgatccttgttcaatagaaggttggatttggaag |
353 |
Q |
| |
|
|| || || | |||||||| ||||||||| | ||||| || || |||||||||| | | ||||| ||||||||||| |||| | ||||||| |
|
|
| T |
22186952 |
ctcgatgtaaagagcagccactcgagggtcgttccattcggcattcctgcttcctctagaattgcttgttccttgttcaaaagaacg------ttggaag |
22186859 |
T |
|
| Q |
354 |
ccatacctttcacttctttccttgatcccatgcacagatgacttaatgccttgaatcttggacgctattcgatggcgagggatcatagttttgactaagt |
453 |
Q |
| |
|
||||| |||||||||||||| ||||| || ||||||||||||| |||||||| || ||||||||| | ||||| | | |||||||| |
|
|
| T |
22186858 |
ccatatctttcacttctttctgtgatctcaataacagatgacttaacatcttgaatcacagatgctattcgacgacgaggtaacgtagttttg------- |
22186766 |
T |
|
| Q |
454 |
gactaatattatggagtaaagccatacacccaagattacgaggatgttgtctcacatggatcatataatcatcaatgatgtcttctatgcgaaaggttgt |
553 |
Q |
| |
|
| ||||| |||||||| ||||| ||| ||| ||||| ||||||| || ||||||| ||||||||||||||| ||||||||| |||| | || |
|
|
| T |
22186765 |
-----agcttatgaagtaaagctatacatccaggatctcgaggttgttgtcgtacctggatcaaataatcatcaatgatatcttctatgtgaaaagctgc |
22186671 |
T |
|
| Q |
554 |
ttctctaacttgtttcacccatgttttgactccttcact |
592 |
Q |
| |
|
||| |||| ||| ||||||||| |||||||||||||||| |
|
|
| T |
22186670 |
ttccctaagttgcttcacccatattttgactccttcact |
22186632 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 54 - 590
Target Start/End: Complemental strand, 22052897 - 22052380
Alignment:
| Q |
54 |
tatgattgtgacactgtgacccatacacgatattcgaagtgtcccatgacctctttgctgtcgaaaacctttttggcaagagtggattttccttgtcctc |
153 |
Q |
| |
|
|||||||| |||||||| | |||||| ||| | || || ||||| |||| || |||||||| ||||| || ||||| ||||| | ||||||||| |||| |
|
|
| T |
22052897 |
tatgattgagacactgtaatccatacccgacaatcaaaatgtccaatgatatccttgctgtcaaaaactttcttggctagagttgtttttccttgccctc |
22052798 |
T |
|
| Q |
154 |
ccattcctaccacagagatgacagtgcgctcttctcttccatccaccaacaatccaatcaatctatttttgggttcttgaaagcctacaatttcaaattc |
253 |
Q |
| |
|
|||||||||||| ||| | |||||||||||||| ||||| | |||| | | |||||||||| ||| | ||| ||| ||| || |||| ||| ||| |
|
|
| T |
22052797 |
ccattcctaccagagaaaccacagtgcgctcttcccttccctttaccatccaatcaatcaatctttttcttggtacttcaaatcccacaacctcagcttc |
22052698 |
T |
|
| Q |
254 |
atcaatatataaagcagccattcgagggtcatgccatttcgccttttggcttcctctaaagtggcttgatccttgttcaatagaaggttggatttggaag |
353 |
Q |
| |
|
| | || | |||||||| ||||||||||| ||| || | || |||||||||| | | ||||| ||||||||||| |||| |||||| || |
|
|
| T |
22052697 |
cttgacgtaaagagcagccactcgagggtcataccacttggtattcctgcttcctctagaattgcttgttccttgttcaacagaacgttgga------ag |
22052604 |
T |
|
| Q |
354 |
ccatacctttcacttctttccttgatcccatgcacagatgacttaatgccttgaatcttggacgctattcgatggcgagggatcatagttttgactaagt |
453 |
Q |
| |
|
||||| |||||||||||||| |||||||||| ||||||| ||||| |||||||||| || ||||||||| | |||||| |||||||||||| |
|
|
| T |
22052603 |
ccatatctttcacttctttctgtgatcccatgaacagatgtcttaagatcttgaatcttagatgctattcgacgacgaggg-tcatagttttgagc---- |
22052509 |
T |
|
| Q |
454 |
gactaatattatggagtaaagccatacacccaagattacgaggatgttgtctcacatggatcatataatcatcaatgatgtcttctatgcgaaaggttgt |
553 |
Q |
| |
|
||||| |||||||| ||||| ||| ||| ||||| ||||||| || ||||||| ||||||||||||||| |||||||||||||| | || |
|
|
| T |
22052508 |
--------ttatgaagtaaagctatacatccaggatagcgaggttgttgtcctacctggatcaaataatcatcaatgatatcttctatgcgaaaagctgc |
22052417 |
T |
|
| Q |
554 |
ttctctaacttgtttcacccatgttttgactccttca |
590 |
Q |
| |
|
|| |||| ||| ||||||||| |||||||||||||| |
|
|
| T |
22052416 |
ctccctaagttgcttcacccatattttgactccttca |
22052380 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #12
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 54 - 447
Target Start/End: Complemental strand, 21945788 - 21945401
Alignment:
| Q |
54 |
tatgattgtgacactgtgacccatacacgatattcgaagtgtcccatgacctctttgctgtcgaaaacctttttggcaagagtggattttccttgtcctc |
153 |
Q |
| |
|
|||||||| ||||| |||| ||||||| || | || ||||||| ||||| || |||||||| ||||| || ||||| ||||||| ||||||||| |||| |
|
|
| T |
21945788 |
tatgattgagacacagtgatccatacaagacaatcaaagtgtcaaatgacatccttgctgtcaaaaactttcttggctagagtggtttttccttgccctc |
21945689 |
T |
|
| Q |
154 |
ccattcctaccacagagatgacagtgcgctcttctcttccatccaccaacaatccaatcaatctatttttgggttcttgaaagcctacaatttcaaattc |
253 |
Q |
| |
|
||||||||||||| || | ||||||||||| || ||||| | |||| | | ||||||| | | || ||| || || || |||| |||| ||| |
|
|
| T |
21945688 |
ccattcctaccacggaaactacagtgcgctcctcccttccctttaccatccaatcaatcaacatgtccttttgtttttcgaaacccacaacttcagcttc |
21945589 |
T |
|
| Q |
254 |
atcaatatataaagcagccattcgagggtcatgccatttcgccttttggcttcctctaaagtggcttgatccttgttcaatagaaggttggatttggaag |
353 |
Q |
| |
|
||||| || | ||||||| |||||||| |||||||| || || |||||||| ||| || ||||||||||||||||| |||| | ||| ||| |
|
|
| T |
21945588 |
gtcaatgtaaagagcagcctgccgagggtcgtgccatttggcattctggcttcccctagagctgcttgatccttgttcaaaagaacg------ttgaaag |
21945495 |
T |
|
| Q |
354 |
ccatacctttcacttctttccttgatcccatgcacagatgacttaatgccttgaatcttggacgctattcgatggcgagggatcatagttttga |
447 |
Q |
| |
|
||||| || |||||||||||||||||||| | ||| ||||||||| ||||||||| || ||||||||| | ||||||||||||||||||| |
|
|
| T |
21945494 |
ccatatgttccacttctttccttgatcccacgaacatatgacttaacatcttgaatctcagatgctattcgacgacgagggatcatagttttga |
21945401 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #13
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 23 - 193
Target Start/End: Original strand, 22615530 - 22615700
Alignment:
| Q |
23 |
caacatgtatctcagcaacccctctatattgtatgattgtgacactgtgacccatacacgatattcgaagtgtcccatgacctctttgctgtcgaaaacc |
122 |
Q |
| |
|
|||||||| |||| |||||| |||||| |||||||||| |||||||||| |||||||||| | || |||||||| ||||| ||||| || ||||| |
|
|
| T |
22615530 |
caacatgtccctcaacaacccttctatactgtatgattgagacactgtgatccatacacgacaatcaaagtgtccacaaacctccttgctatcaaaaaca |
22615629 |
T |
|
| Q |
123 |
tttttggcaagagtggattttccttgtcctcccattcctaccacagagatgacagtgcgctcttctcttcc |
193 |
Q |
| |
|
|| ||||||||||||| ||| || || ||||||||||| |||||||||| |||||||||||| ||||||| |
|
|
| T |
22615630 |
ttcttggcaagagtggttttaccctgccctcccattcccaccacagagacaacagtgcgctctactcttcc |
22615700 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #14
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 54 - 373
Target Start/End: Complemental strand, 22028164 - 22027851
Alignment:
| Q |
54 |
tatgattgtgacactgtgacccatacacgatattcgaagtgtcccatgacctctttgctgtcgaaaacctttttggcaagagtggattttccttgtcctc |
153 |
Q |
| |
|
|||||||| |||||||| | |||||||||| | || ||||||||||||| || |||||||| ||||| || ||||| ||||| | ||||||||| |||| |
|
|
| T |
22028164 |
tatgattgagacactgtaatccatacacgacaatcaaagtgtcccatgatatccttgctgtcaaaaactttcttggctagagttgtttttccttgccctc |
22028065 |
T |
|
| Q |
154 |
ccattcctaccacagagatgacagtgcgctcttctcttccatccaccaacaatccaatcaatctatttttgggttcttgaaagcctacaatttcaaattc |
253 |
Q |
| |
|
|||||||||||||||| | |||||||||||||| ||||| | |||||| | || ||||||| ||| | || ||| ||| || |||| ||| ||| |
|
|
| T |
22028064 |
ccattcctaccacagacaccacagtgcgctcttcccttccctgtaccaaccaatcagtcaatctttttcttggcgcttcaaatcccacaacctcagcttc |
22027965 |
T |
|
| Q |
254 |
atcaatatataaagcagccattcgagggtcatgccatttcgccttttggcttcctctaaagtggcttgatccttgttcaatagaaggttggatttggaag |
353 |
Q |
| |
|
|| || || | |||||||| ||||||||| | |||||| || || |||||||||| | | ||||| ||||||||||| |||| | ||||||| |
|
|
| T |
22027964 |
ctcgatgtaaagagcagccactcgagggtcgttccatttggcattcctgcttcctctagaattgcttgttccttgttcaaaagaacg------ttggaag |
22027871 |
T |
|
| Q |
354 |
ccatacctttcacttctttc |
373 |
Q |
| |
|
||||| |||||||||||||| |
|
|
| T |
22027870 |
ccatatctttcacttctttc |
22027851 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #15
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 338 - 447
Target Start/End: Original strand, 22615827 - 22615936
Alignment:
| Q |
338 |
aggttggatttggaagccatacctttcacttctttccttgatcccatgcacagatgacttaatgccttgaatcttggacgctattcgatggcgagggatc |
437 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||| | ||||| ||||||| |||||||||| ||| | |||||||||||||||||| |
|
|
| T |
22615827 |
aggttggatttggaagccatatctttcacttctttccttgatcatacaaacagacgacttaacttcttgaatctttgacccaattcgatggcgagggatc |
22615926 |
T |
|
| Q |
438 |
atagttttga |
447 |
Q |
| |
|
| |||||||| |
|
|
| T |
22615927 |
aaagttttga |
22615936 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #16
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 54 - 193
Target Start/End: Complemental strand, 21937317 - 21937178
Alignment:
| Q |
54 |
tatgattgtgacactgtgacccatacacgatattcgaagtgtcccatgacctctttgctgtcgaaaacctttttggcaagagtggattttccttgtcctc |
153 |
Q |
| |
|
|||| ||| |||||||||| |||||||||| | || |||||||| | ||| || |||||||| ||| | || || || ||||||| ||||||||| |||| |
|
|
| T |
21937317 |
tatgcttgagacactgtgatccatacacgacaatcaaagtgtccaacgacatccttgctgtcaaaagctttcttagctagagtggtttttccttgccctc |
21937218 |
T |
|
| Q |
154 |
ccattcctaccacagagatgacagtgcgctcttctcttcc |
193 |
Q |
| |
|
|||||||||||||||| | |||||||||||| | ||||| |
|
|
| T |
21937217 |
ccattcctaccacagaaacaacagtgcgctctgcccttcc |
21937178 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #17
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 462 - 592
Target Start/End: Complemental strand, 22010596 - 22010466
Alignment:
| Q |
462 |
ttatggagtaaagccatacacccaagattacgaggatgttgtctcacatggatcatataatcatcaatgatgtcttctatgcgaaaggttgtttctctaa |
561 |
Q |
| |
|
||||| |||||||| ||||| ||| ||| | ||| ||||||| || ||||||| ||||||||||||||| ||||||||| |||| | || ||| |||| |
|
|
| T |
22010596 |
ttatgaagtaaagctatacatccaggatctcaaggttgttgtcgtacctggatcaaataatcatcaatgatatcttctatgtgaaaagctgcttccctaa |
22010497 |
T |
|
| Q |
562 |
cttgtttcacccatgttttgactccttcact |
592 |
Q |
| |
|
||| ||||||||| |||||||||||||||| |
|
|
| T |
22010496 |
gttgcttcacccatattttgactccttcact |
22010466 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #18
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 63 - 205
Target Start/End: Complemental strand, 22208175 - 22208033
Alignment:
| Q |
63 |
gacactgtgacccatacacgatattcgaagtgtcccatgacctctttgctgtcgaaaacctttttggcaagagtggattttccttgtcctcccattccta |
162 |
Q |
| |
|
|||||||||| |||||||||| | || |||| ||| || |||||||||||||| ||||| | ||||||||||| | ||| ||||| |||||||| || | |
|
|
| T |
22208175 |
gacactgtgatccatacacgacaatcaaagtatccaataacctctttgctgtcaaaaacttgcttggcaagagttgttttaccttgccctcccatcccaa |
22208076 |
T |
|
| Q |
163 |
ccacagagatgacagtgcgctcttctcttccatccaccaacaa |
205 |
Q |
| |
|
|||| |||| |||||| |||||| ||||||||| | |||||| |
|
|
| T |
22208075 |
ccaccgagacaacagtgagctcttttcttccatctatcaacaa |
22208033 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #19
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 54 - 193
Target Start/End: Complemental strand, 21930585 - 21930446
Alignment:
| Q |
54 |
tatgattgtgacactgtgacccatacacgatattcgaagtgtcccatgacctctttgctgtcgaaaacctttttggcaagagtggattttccttgtcctc |
153 |
Q |
| |
|
|||||||| |||||||||| |||||| || | | || ||||| |||| || |||||||| ||||| || ||||| ||||| | ||||||||| |||| |
|
|
| T |
21930585 |
tatgattgagacactgtgatccatactcggaaatgaaaatgtccaatgatatccttgctgtcaaaaactttcttggctagagttgtttttccttgccctc |
21930486 |
T |
|
| Q |
154 |
ccattcctaccacagagatgacagtgcgctcttctcttcc |
193 |
Q |
| |
|
|||||||||||||||| | |||||||||||||| ||||| |
|
|
| T |
21930485 |
ccattcctaccacagacaccacagtgcgctcttcccttcc |
21930446 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #20
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 140 - 190
Target Start/End: Original strand, 18967373 - 18967423
Alignment:
| Q |
140 |
ttttccttgtcctcccattcctaccacagagatgacagtgcgctcttctct |
190 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||| ||||| ||||||||| |
|
|
| T |
18967373 |
ttttccttgccctcccattcctaccacagagatgatagtgccctcttctct |
18967423 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #21
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 510 - 592
Target Start/End: Complemental strand, 22114106 - 22114024
Alignment:
| Q |
510 |
tggatcatataatcatcaatgatgtcttctatgcgaaaggttgtttctctaacttgtttcacccatgttttgactccttcact |
592 |
Q |
| |
|
||||||| ||||||||||||||| ||||||||| |||| | || || |||| ||| ||||||||| |||||||||||||||| |
|
|
| T |
22114106 |
tggatcaaataatcatcaatgatatcttctatgtgaaaagctgcctccctaagttgcttcacccatattttgactccttcact |
22114024 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #22
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 468 - 592
Target Start/End: Complemental strand, 21945392 - 21945268
Alignment:
| Q |
468 |
agtaaagccatacacccaagattacgaggatgttgtctcacatggatcatataatcatcaatgatgtcttctatgcgaaaggttgtttctctaacttgtt |
567 |
Q |
| |
|
|||||||| ||||| ||| ||| ||||| |||||| || ||||||| ||||||||||||||| |||||||||||||| | || | |||| ||| | |
|
|
| T |
21945392 |
agtaaagctatacatccaggatagcgaggtcgttgtcctacctggatcaaataatcatcaatgatatcttctatgcgaaaagctgccaccctaagttgct |
21945293 |
T |
|
| Q |
568 |
tcacccatgttttgactccttcact |
592 |
Q |
| |
|
|||||||| ||||||||| |||||| |
|
|
| T |
21945292 |
tcacccatattttgactctttcact |
21945268 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #23
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 534 - 590
Target Start/End: Original strand, 3304355 - 3304411
Alignment:
| Q |
534 |
tcttctatgcgaaaggttgtttctctaacttgtttcacccatgttttgactccttca |
590 |
Q |
| |
|
|||||||||||||| | | |||||| ||||| |||||||||||||||||||||||| |
|
|
| T |
3304355 |
tcttctatgcgaaaagatacttctcttacttgcttcacccatgttttgactccttca |
3304411 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #24
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 507 - 595
Target Start/End: Original strand, 18967722 - 18967810
Alignment:
| Q |
507 |
acatggatcatataatcatcaatgatgtcttctatgcgaaaggttgtttctctaacttgtttcacccatgttttgactccttcactagt |
595 |
Q |
| |
|
|||||||||| ||||||||||| ||||| |||||||||||| | || || ||||| || |||| |||| |||| |||||||| ||||| |
|
|
| T |
18967722 |
acatggatcacataatcatcaacgatgttttctatgcgaaaagatgctttcctaacctgcttcaaccatattttcactccttcgctagt |
18967810 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #25
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 126 - 184
Target Start/End: Complemental strand, 2749122 - 2749064
Alignment:
| Q |
126 |
ttggcaagagtggattttccttgtcctcccattcctaccacagagatgacagtgcgctc |
184 |
Q |
| |
|
||||||||||||| ||||||| | ||||||||||||||||| || || || |||||||| |
|
|
| T |
2749122 |
ttggcaagagtggtttttcctaggcctcccattcctaccacggatatcaccgtgcgctc |
2749064 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #26
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 126 - 184
Target Start/End: Complemental strand, 2807394 - 2807336
Alignment:
| Q |
126 |
ttggcaagagtggattttccttgtcctcccattcctaccacagagatgacagtgcgctc |
184 |
Q |
| |
|
||||||||||||| ||||||| | ||||||||||||||||| || || || |||||||| |
|
|
| T |
2807394 |
ttggcaagagtggtttttcctagacctcccattcctaccaccgaaatcaccgtgcgctc |
2807336 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #27
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 126 - 184
Target Start/End: Original strand, 2838611 - 2838669
Alignment:
| Q |
126 |
ttggcaagagtggattttccttgtcctcccattcctaccacagagatgacagtgcgctc |
184 |
Q |
| |
|
||||||||||||| ||||||| | || |||||||||||||| || ||||| |||||||| |
|
|
| T |
2838611 |
ttggcaagagtggtttttcctagaccccccattcctaccactgatatgactgtgcgctc |
2838669 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 137; Significance: 3e-71; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 137; E-Value: 3e-71
Query Start/End: Original strand, 20 - 547
Target Start/End: Complemental strand, 34980360 - 34979846
Alignment:
| Q |
20 |
cttcaacatgtatctcagcaacccctctatattgtatgattgtgacactgtgacccatacacgatattcgaagtgtcccatgacctctttgctgtcgaaa |
119 |
Q |
| |
|
|||||||||| ||||||||| | || ||||||||||||||||||||||||| |||||||||| |||| |||||||||| ||||||||||| || ||| |
|
|
| T |
34980360 |
cttcaacatgcgtctcagcaatacttcaatattgtatgattgtgacactgtgatccatacacgacattcaaagtgtcccacaacctctttgctatcaaaa |
34980261 |
T |
|
| Q |
120 |
acctttttggcaagagtggattttccttgtcctcccattcctaccacagagatg--acagtgcgctcttctcttccatccaccaacaatccaatcaatct |
217 |
Q |
| |
|
|| ||||| |||||||| ||||||||| ||||||||||| || ||||||||| |||||||||||| ||||||| | |||||| | |||||||||| |
|
|
| T |
34980260 |
acttttttagcaagagttatttttccttgccctcccattccaactacagagatgacacagtgcgctctactcttccctttaccaaccaatcaatcaatct |
34980161 |
T |
|
| Q |
218 |
atttttgggttcttgaaagcctacaatttcaaattcatcaatatataaagcagccattcgagggtcatgccatttcgccttttggcttcctctaaagtgg |
317 |
Q |
| |
|
|||||||||||||||||||||||||| |||| |||| | || ||||||||||||||||| ||||| |||||||| || |||||| |||||| |||| | |
|
|
| T |
34980160 |
atttttgggttcttgaaagcctacaacttcagattcgttgatgtataaagcagccattcgtgggtcgtgccatttggcattttggattcctcgaaagctg |
34980061 |
T |
|
| Q |
318 |
cttgatccttgttcaatagaaggttggatttggaagccatacctttcacttctttccttgatcccatgcacagatgacttaatgccttgaatcttggacg |
417 |
Q |
| |
|
|| ||||| |||||||||||| ||||| |||||||||||||| ||||||||| ||| |||||| ||| ||||||||| || | |
|
|
| T |
34980060 |
ctagatcc---------------ttggatttggaaaccatatctttcacttctttctttgatcccacaaacaactgacttgatgtcttgaatctcagatg |
34979976 |
T |
|
| Q |
418 |
ctattcgatggcgagggatcatagttttgactaagtgactaatattatggagtaaagccatacacccaagattacgaggatgttgtctcacatggatcat |
517 |
Q |
| |
|
||||| || | |||| |||||||||||| |||||| ||| |||| ||||| || || || ||| ||| |||||| || || | ||||||||||| |
|
|
| T |
34979975 |
ctatttgacgaagaggagtcatagttttgagcaagtgaggaatcttattgagtagagatatgcatccaggatcacgaggttgctgccctacatggatcat |
34979876 |
T |
|
| Q |
518 |
ataatcatcaatgatgtcttctatgcgaaa |
547 |
Q |
| |
|
|||||||||||||| |||||||| ||||| |
|
|
| T |
34979875 |
ataatcatcaatgacatcttctatacgaaa |
34979846 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 122; E-Value: 3e-62
Query Start/End: Original strand, 51 - 328
Target Start/End: Complemental strand, 34989384 - 34989107
Alignment:
| Q |
51 |
ttgtatgattgtgacactgtgacccatacacgatattcgaagtgtcccatgacctctttgctgtcgaaaacctttttggcaagagtggattttccttgtc |
150 |
Q |
| |
|
|||| ||||||||||||||||| |||||||||| |||| |||||||||| ||||||||||| || ||||||||||| |||||||||| ||||||||| | |
|
|
| T |
34989384 |
ttgtttgattgtgacactgtgatccatacacgacattcaaagtgtcccacaacctctttgctatcaaaaacctttttagcaagagtggtttttccttgcc |
34989285 |
T |
|
| Q |
151 |
ctcccattcctaccacagagatgacagtgcgctcttctcttccatccaccaacaatccaatcaatctatttttgggttcttgaaagcctacaatttcaaa |
250 |
Q |
| |
|
||||||| || || ||||||||||||||||||||| ||||||| | |||| | | |||||||||||||||||||||||||||||||||| | |||| |
|
|
| T |
34989284 |
ctcccatcccaactacagagatgacagtgcgctctactcttccctttaccagccaatcaatcaatctatttttgggttcttgaaagcctacgacttcagc |
34989185 |
T |
|
| Q |
251 |
ttcatcaatatataaagcagccattcgagggtcatgccatttcgccttttggcttcctctaaagtggcttgatccttg |
328 |
Q |
| |
|
|||||| || ||||||||||||||||| | || | |||||| || |||||| ||||||||||| ||| |||||||| |
|
|
| T |
34989184 |
ttcatcgatgtataaagcagccattcgttgatcgttccatttggcgttttggtttcctctaaagctgctagatccttg |
34989107 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 118; E-Value: 7e-60
Query Start/End: Original strand, 51 - 327
Target Start/End: Complemental strand, 34975549 - 34975273
Alignment:
| Q |
51 |
ttgtatgattgtgacactgtgacccatacacgatattcgaagtgtcccatgacctctttgctgtcgaaaacctttttggcaagagtggattttccttgtc |
150 |
Q |
| |
|
|||| ||||||||||||||||| |||||||||| |||| |||||||||| ||||||||||| || ||||||||||| |||||||||| ||||||||| | |
|
|
| T |
34975549 |
ttgtgtgattgtgacactgtgatccatacacgacattcaaagtgtcccacaacctctttgctatcaaaaacctttttagcaagagtggtttttccttgcc |
34975450 |
T |
|
| Q |
151 |
ctcccattcctaccacagagatgacagtgcgctcttctcttccatccacc-aacaatccaatcaatctatttttgggttcttgaaagcctacaatttcaa |
249 |
Q |
| |
|
||||||| || || ||||||||||||||||||||| ||||||| | ||| |||||| |||||||| | ||||||||||||||||||||||||| |||| |
|
|
| T |
34975449 |
ctcccatcccaactacagagatgacagtgcgctctactcttccctttaccaaacaat-caatcaatatttttttgggttcttgaaagcctacaacttcag |
34975351 |
T |
|
| Q |
250 |
attcatcaatatataaagcagccattcgagggtcatgccatttcgccttttggcttcctctaaagtggcttgatcctt |
327 |
Q |
| |
|
|||||| || |||||||||||||||| || || |||||||| || |||||| |||||||||| ||| ||||||| |
|
|
| T |
34975350 |
cttcatcgatgaataaagcagccattcgtggatcgtgccatttggcattttggactcctctaaagctgctagatcctt |
34975273 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 20 - 109
Target Start/End: Original strand, 2305753 - 2305842
Alignment:
| Q |
20 |
cttcaacatgtatctcagcaacccctctatattgtatgattgtgacactgtgacccatacacgatattcgaagtgtcccatgacctcttt |
109 |
Q |
| |
|
|||||||||| |||||| ||| | |||||||||||||||||||||| ||||| |||||||||| |||| |||||||||| |||||||| |
|
|
| T |
2305753 |
cttcaacatgcatctcaacaagacttctatattgtatgattgtgacattgtgatccatacacgacattcaaagtgtcccacaacctcttt |
2305842 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 341 - 446
Target Start/End: Complemental strand, 34989109 - 34989004
Alignment:
| Q |
341 |
ttggatttggaagccatacctttcacttctttccttgatcccatgcacagatgacttaatgccttgaatcttggacgctattcgatggcgagggatcata |
440 |
Q |
| |
|
|||||||||||| ||||| |||||||||||||| ||||| ||| ||| |||||| ||| ||||||||| || |||||| || ||||||| ||||| |
|
|
| T |
34989109 |
ttggatttggaaaccatatctttcacttctttctttgattccacaaacaactgacttgatgtcttgaatctcagaagctatttgacggcgaggagtcata |
34989010 |
T |
|
| Q |
441 |
gttttg |
446 |
Q |
| |
|
|||||| |
|
|
| T |
34989009 |
gttttg |
34989004 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 507 - 547
Target Start/End: Complemental strand, 34975228 - 34975188
Alignment:
| Q |
507 |
acatggatcatataatcatcaatgatgtcttctatgcgaaa |
547 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||| |||| |
|
|
| T |
34975228 |
acatggatcatataatcatcaatgacatcttctatgagaaa |
34975188 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 57; Significance: 2e-23; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 58 - 186
Target Start/End: Complemental strand, 27294708 - 27294580
Alignment:
| Q |
58 |
attgtgacactgtgacccatacacgatattcgaagtgtcccatgacctctttgctgtcgaaaacctttttggcaagagtggattttccttgtcctcccat |
157 |
Q |
| |
|
|||| |||||||||| |||||||||||| || | |||||| ||||| || |||||||| ||||| || ||| | ||||||| |||||||||||||||||| |
|
|
| T |
27294708 |
attgagacactgtgatccatacacgatagtcaaggtgtccgatgacatccttgctgtcaaaaactttcttgactagagtggtttttccttgtcctcccat |
27294609 |
T |
|
| Q |
158 |
tcctaccacagagatgacagtgcgctctt |
186 |
Q |
| |
|
|||||||||||| | ||||||| ||||| |
|
|
| T |
27294608 |
tcctaccacagaaactacagtgccctctt |
27294580 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 347 - 472
Target Start/End: Complemental strand, 27294472 - 27294344
Alignment:
| Q |
347 |
ttggaagccatacctttcacttctttccttgatcccatgcacagatga---cttaatgccttgaatcttggacgctattcgatggcgagggatcatagtt |
443 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||| | | || ||| ||| ||| ||||||| | | |||||| ||||| |||||||||||||| |
|
|
| T |
27294472 |
ttggaagccatatctttcacttctttccttgatcccgcgaataggtgatcacttcatgtcttgaatttcatatgctatttgatggagagggatcatagtt |
27294373 |
T |
|
| Q |
444 |
ttgactaagtgactaatattatggagtaa |
472 |
Q |
| |
|
|||| ||||||| ||| ||||||||||| |
|
|
| T |
27294372 |
ttgagaaagtgaccaatcttatggagtaa |
27294344 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 347 - 447
Target Start/End: Original strand, 873151 - 873251
Alignment:
| Q |
347 |
ttggaagccatacctttcacttctttccttgatcccatgcacagatgacttaatgccttgaatcttggacgctattcgatggcgagggatcatagttttg |
446 |
Q |
| |
|
|||||||||||| ||||||||||||||||| |||| | | ||| ||||||||||| | ||||||| || ||||||| |||||||| ||||||||||| |
|
|
| T |
873151 |
ttggaagccatatctttcacttctttccttaatccaaagaacatatgacttaatgtcctgaatctcatacattattcgacggcgagggttcatagttttg |
873250 |
T |
|
| Q |
447 |
a |
447 |
Q |
| |
|
| |
|
|
| T |
873251 |
a |
873251 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 347 - 447
Target Start/End: Original strand, 1234428 - 1234528
Alignment:
| Q |
347 |
ttggaagccatacctttcacttctttccttgatcccatgcacagatgacttaatgccttgaatcttggacgctattcgatggcgagggatcatagttttg |
446 |
Q |
| |
|
|||||||||||| ||||||||||||||||| |||| | | ||| ||||||||||| | ||||||| || ||||||| |||||||| ||||||||||| |
|
|
| T |
1234428 |
ttggaagccatatctttcacttctttccttaatccaaagaacatatgacttaatgtcctgaatctcatacattattcgacggcgagggttcatagttttg |
1234527 |
T |
|
| Q |
447 |
a |
447 |
Q |
| |
|
| |
|
|
| T |
1234528 |
a |
1234528 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 36 - 84
Target Start/End: Original strand, 29610855 - 29610903
Alignment:
| Q |
36 |
agcaacccctctatattgtatgattgtgacactgtgacccatacacgat |
84 |
Q |
| |
|
||||| || |||||||||||||||||||| ||||||| ||||||||||| |
|
|
| T |
29610855 |
agcaatccttctatattgtatgattgtgatactgtgatccatacacgat |
29610903 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University