View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2610_high_5 (Length: 545)

Name: NF2610_high_5
Description: NF2610
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2610_high_5
NF2610_high_5
[»] chr6 (10 HSPs)
chr6 (7-530)||(28179746-28180275)
chr6 (121-306)||(28156185-28156366)
chr6 (393-463)||(28224925-28224995)
chr6 (121-226)||(28224513-28224616)
chr6 (393-438)||(28241084-28241129)
chr6 (465-530)||(28241900-28241967)
chr6 (325-388)||(28156520-28156583)
chr6 (313-387)||(28240973-28241047)
chr6 (249-305)||(28224619-28224675)
chr6 (314-354)||(28224858-28224898)
[»] scaffold0038 (7 HSPs)
scaffold0038 (393-463)||(25423-25493)
scaffold0038 (121-226)||(25011-25114)
scaffold0038 (393-438)||(41246-41291)
scaffold0038 (465-530)||(42062-42129)
scaffold0038 (313-387)||(41135-41209)
scaffold0038 (249-305)||(25117-25173)
scaffold0038 (314-354)||(25356-25396)
[»] scaffold0019 (1 HSPs)
scaffold0019 (393-458)||(58925-58990)


Alignment Details
Target: chr6 (Bit Score: 461; Significance: 0; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 461; E-Value: 0
Query Start/End: Original strand, 7 - 530
Target Start/End: Original strand, 28179746 - 28180275
Alignment:
Q  7 gtgagatgaaaatgtgttacaaaagttgtagtcaaaatgaagcatgatagtggtatgtgacaggatgttctcaggaatttattcattgtaactattgttc 106  Q
    |||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  28179746 gtgatatgaaaatgtgttacaaaaattgtagtcaaaatgaagcatgatagtggtatgtgacaggatgttctcaggaatttattcattgtaattattgttc 28179845  T
Q  107 ataggtaatgaaat----------tttaaatgtttgaaagccttgaattttagtaacttttatgcttttaaagagtgtttgatgttaggcattcagcgaa 196  Q
    ||||||||||||||          ||||||||||||||||||||||||||||   |||||||||||||||||||||||||||||||||||||||||||||    
T  28179846 ataggtaatgaaatatgtagaagctttaaatgtttgaaagccttgaatttta---acttttatgcttttaaagagtgtttgatgttaggcattcagcgaa 28179942  T
Q  197 catttgataacttggcttgtagaattgatgaaataaagctgaattagttggataaaaaccaattttgttatgttttcaatgaaatcaggtagatttttat 296  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28179943 catttgataacttggcttgtagaattgatgaa-taaagctgaattagttggataaaaaccaattttgttatgttttcaatgaaatcaggtagatttttat 28180041  T
Q  297 aaaggttttacatgagtatttgagtttgaataattcaatcattaaatatgtgtttattgttgtgaagtttcctttgtttaagaggcctaatactgagcaa 396  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28180042 aaaggttttacatgagtatttgagtttgaataattcaatcattaaatatgtgtttattgttgtgaagtttcctttgtttaagaggcctaatactgagcaa 28180141  T
Q  397 agatggagtaaatgttgcaaagagcgttgaattcaacattggaggcagtctggcatagattggtgaacatatttcgagtagattttacattatagtctaa 496  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28180142 agatggagtaaatgttgcaaagagcgttgaattcaacattggaggcagtctggcatagattggtgaacatatttcgagtagattttacattatagtctaa 28180241  T
Q  497 ttaatctaaaccattggctactttgatatttatg 530  Q
    ||||||| ||||||||||||||||||||||||||    
T  28180242 ttaatctgaaccattggctactttgatatttatg 28180275  T

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Target: chr6; HSP #2
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 121 - 306
Target Start/End: Original strand, 28156185 - 28156366
Alignment:
Q  121 tttaaatgtttgaaagccttgaattttagtaacttttatgcttttaaagagtgtttgatgttaggcattcagcgaacatttgataacttggcttgtagaa 220  Q
    |||||||||| ||||||||| ||||||| |   || ||||||||||||||| ||||||||||||||||| ||| ||| |||||||| | |||||||||||    
T  28156185 tttaaatgttcgaaagccttaaattttaatt--ttgtatgcttttaaagagcgtttgatgttaggcatttagcaaacgtttgataaatgggcttgtagaa 28156282  T
Q  221 ttgatgaaataaagctgaattagttggataaaaaccaattttgttatgttttcaatgaaatcaggtagatttttataaaggtttta 306  Q
    |  ||||| | ||| || |||||||||||||||||||| |||  ||||||||||||||||||| |||||||||||||| |||||||    
T  28156283 ta-atgaa-tcaagttgcattagttggataaaaaccaactttcgtatgttttcaatgaaatcatgtagatttttataatggtttta 28156366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 393 - 463
Target Start/End: Original strand, 28224925 - 28224995
Alignment:
Q  393 gcaaagatggagtaaatgttgcaaagagcgttgaattcaacattggaggcagtctggcatagattggtgaa 463  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||| ||||    
T  28224925 gcaaagatggagtaaatgttgcaaagagcattgaattcaacattggaggcagtcttgcatagattgttgaa 28224995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 121 - 226
Target Start/End: Original strand, 28224513 - 28224616
Alignment:
Q  121 tttaaatgtttgaaagccttgaattttagtaacttttatgcttttaaagagtgtttgatgttaggcattcagcgaacatttgataacttggcttgtagaa 220  Q
    |||||||||||||||||||| ||||||| |   || ||||||||||||||||||||||||||||| ||| ||| ||| || ||||| |||||||||||||    
T  28224513 tttaaatgtttgaaagccttaaattttaatt--ttgtatgcttttaaagagtgtttgatgttaggtatttagcaaacgttcgataatttggcttgtagaa 28224610  T
Q  221 ttgatg 226  Q
    ||||||    
T  28224611 ttgatg 28224616  T

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Target: chr6; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 393 - 438
Target Start/End: Original strand, 28241084 - 28241129
Alignment:
Q  393 gcaaagatggagtaaatgttgcaaagagcgttgaattcaacattgg 438  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||    
T  28241084 gcaaagatggagtaaatgttgcaaagagcattgaattcaacattgg 28241129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 465 - 530
Target Start/End: Original strand, 28241900 - 28241967
Alignment:
Q  465 atatttcgagtagattttacattatagtctaat--taatctaaaccattggctactttgatatttatg 530  Q
    ||||||| || ||||||||| ||||||||||||  |||||| ||||||||||||||||||||||||||    
T  28241900 atatttcaagaagattttactttatagtctaataataatctgaaccattggctactttgatatttatg 28241967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 325 - 388
Target Start/End: Original strand, 28156520 - 28156583
Alignment:
Q  325 aataattcaatcattaaatatgtgtttattgttgtgaagtttcctttgtttaagaggcctaata 388  Q
    ||||||||||||||| ||| ||| ||||||||||||||||||||| ||||| |||||| |||||    
T  28156520 aataattcaatcattcaatctgtctttattgttgtgaagtttcctctgttttagaggcataata 28156583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 313 - 387
Target Start/End: Original strand, 28240973 - 28241047
Alignment:
Q  313 tatttgagtttgaataattcaatcattaaatatgtgtttattgttgtgaagtttcctttgtttaagaggcctaat 387  Q
    ||||||| ||||||||||| ||||||| ||| ||||||||||||||| ||||||  | ||||| |||||||||||    
T  28240973 tatttgaatttgaataatttaatcattcaatctgtgtttattgttgtaaagtttaatctgttttagaggcctaat 28241047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 249 - 305
Target Start/End: Original strand, 28224619 - 28224675
Alignment:
Q  249 taaaaaccaattttgttatgttttcaatgaaatcaggtagatttttataaaggtttt 305  Q
    ||||||||||||||| |||||||||||| |||||  |||||||| ||||||||||||    
T  28224619 taaaaaccaattttggtatgttttcaataaaatcttgtagatttctataaaggtttt 28224675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 314 - 354
Target Start/End: Original strand, 28224858 - 28224898
Alignment:
Q  314 atttgagtttgaataattcaatcattaaatatgtgtttatt 354  Q
    |||||||||||||||||||||||||| ||| ||||||||||    
T  28224858 atttgagtttgaataattcaatcattcaatctgtgtttatt 28224898  T

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Target: scaffold0038 (Bit Score: 59; Significance: 1e-24; HSPs: 7)
Name: scaffold0038
Description:

Target: scaffold0038; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 393 - 463
Target Start/End: Original strand, 25423 - 25493
Alignment:
Q  393 gcaaagatggagtaaatgttgcaaagagcgttgaattcaacattggaggcagtctggcatagattggtgaa 463  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||| ||||    
T  25423 gcaaagatggagtaaatgttgcaaagagcattgaattcaacattggaggcagtcttgcatagattgttgaa 25493  T

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Target: scaffold0038; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 121 - 226
Target Start/End: Original strand, 25011 - 25114
Alignment:
Q  121 tttaaatgtttgaaagccttgaattttagtaacttttatgcttttaaagagtgtttgatgttaggcattcagcgaacatttgataacttggcttgtagaa 220  Q
    |||||||||||||||||||| ||||||| |   || ||||||||||||||||||||||||||||| ||| ||| ||| || ||||| |||||||||||||    
T  25011 tttaaatgtttgaaagccttaaattttaatt--ttgtatgcttttaaagagtgtttgatgttaggtatttagcaaacgttcgataatttggcttgtagaa 25108  T
Q  221 ttgatg 226  Q
    ||||||    
T  25109 ttgatg 25114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 393 - 438
Target Start/End: Original strand, 41246 - 41291
Alignment:
Q  393 gcaaagatggagtaaatgttgcaaagagcgttgaattcaacattgg 438  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||    
T  41246 gcaaagatggagtaaatgttgcaaagagcattgaattcaacattgg 41291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038; HSP #4
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 465 - 530
Target Start/End: Original strand, 42062 - 42129
Alignment:
Q  465 atatttcgagtagattttacattatagtctaat--taatctaaaccattggctactttgatatttatg 530  Q
    ||||||| || ||||||||| ||||||||||||  |||||| ||||||||||||||||||||||||||    
T  42062 atatttcaagaagattttactttatagtctaataataatctgaaccattggctactttgatatttatg 42129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038; HSP #5
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 313 - 387
Target Start/End: Original strand, 41135 - 41209
Alignment:
Q  313 tatttgagtttgaataattcaatcattaaatatgtgtttattgttgtgaagtttcctttgtttaagaggcctaat 387  Q
    ||||||| ||||||||||| ||||||| ||| ||||||||||||||| ||||||  | ||||| |||||||||||    
T  41135 tatttgaatttgaataatttaatcattcaatctgtgtttattgttgtaaagtttaatctgttttagaggcctaat 41209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 249 - 305
Target Start/End: Original strand, 25117 - 25173
Alignment:
Q  249 taaaaaccaattttgttatgttttcaatgaaatcaggtagatttttataaaggtttt 305  Q
    ||||||||||||||| |||||||||||| |||||  |||||||| ||||||||||||    
T  25117 taaaaaccaattttggtatgttttcaataaaatcttgtagatttctataaaggtttt 25173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 314 - 354
Target Start/End: Original strand, 25356 - 25396
Alignment:
Q  314 atttgagtttgaataattcaatcattaaatatgtgtttatt 354  Q
    |||||||||||||||||||||||||| ||| ||||||||||    
T  25356 atttgagtttgaataattcaatcattcaatctgtgtttatt 25396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0019 (Bit Score: 46; Significance: 5e-17; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 393 - 458
Target Start/End: Complemental strand, 58990 - 58925
Alignment:
Q  393 gcaaagatggagtaaatgttgcaaagagcgttgaattcaacattggaggcagtctggcatagattg 458  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||| || ||| |||| |||||    
T  58990 gcaaagatggagtaaatgttgcaaagagcattgaattcaacattggagccactcttgcattgattg 58925  T

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