View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2610_low_10 (Length: 517)
Name: NF2610_low_10
Description: NF2610
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2610_low_10 |
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Alignment Details
Target: chr4 (Bit Score: 287; Significance: 1e-161; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 42 - 454
Target Start/End: Complemental strand, 48976286 - 48975879
Alignment:
| Q |
42 |
tctggatatgaattttaatcttagtacatgccgtaatattcttttttcatgagccgtacatatcggaattgcgtctatatgatggaatgcaagcatcgtt |
141 |
Q |
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| T |
48976286 |
tctggatatgaattttaatcttagtacatgccgtaatattcttttttcatgagccgtacat-------ttgcgtctatatgatggaatgcaagcatcgtt |
48976194 |
T |
|
| Q |
142 |
gataaagttgaagaagataatggaatatgattgtttaatggacaatactttttgttagagtatttaattggcaaatactcnnnnnnnnnnnnnnngacag |
241 |
Q |
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| T |
48976193 |
gataaagttgaagaagataatggaatatgattgtttaatggacaatactttttgttagagtatttaatgggcaaatagtctcttttttttttt--gacag |
48976096 |
T |
|
| Q |
242 |
atttgaatggacaaatacnnnnnnngaaggaatggacaaatacttgttagccccttctttgct----catatatatagttatgttatatatgcaagctta |
337 |
Q |
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|||| ||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
48976095 |
attttaatggacaaatactttttttgaaggaatggacaaatacttgttagccccttctttgctagctcatatatatagttatgttatatatgcaagctta |
48975996 |
T |
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| Q |
338 |
tgatatacaattaacactctcctacaggtaagagagggctggatagtgatgacttgatttattgaataaactgtttacagaacgtccaaccaagcaaaat |
437 |
Q |
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| T |
48975995 |
tgatatacaattaacactctcctacaggtaagagagggctggatagtgatgacttgatttattgaataaacggtttacagaacgtccaaccaagcaaaat |
48975896 |
T |
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| Q |
438 |
taacaaagccacgcaaa |
454 |
Q |
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| T |
48975895 |
taacaaagccacgcaaa |
48975879 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 452 - 501
Target Start/End: Complemental strand, 48975846 - 48975797
Alignment:
| Q |
452 |
aaataaatatataaaactcatcatatccatacttgcatccagtaagagct |
501 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
48975846 |
aaataaataaataaaactcatcatatccatacttgcatccagtaagagct |
48975797 |
T |
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