View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2610_low_11 (Length: 478)
Name: NF2610_low_11
Description: NF2610
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2610_low_11 |
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Alignment Details
Target: chr3 (Bit Score: 401; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 401; E-Value: 0
Query Start/End: Original strand, 14 - 462
Target Start/End: Original strand, 41729508 - 41729956
Alignment:
| Q |
14 |
cagagaggggttgttctaactagagaatttctaacttgtaaagttatactaccaaatcctacactatggtatgttactgaaactcctgtaaatatatgta |
113 |
Q |
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| T |
41729508 |
cagagaggggctgttctaactagagaatttctaacttgtaaagttatactaccaaatcctacactatggtatgttactgaaactcctgtaaatatatgta |
41729607 |
T |
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| Q |
114 |
ctttctgtaaatattatcaatttcttaagaagatactctctttcaattcatgatttgcagtacgcagtttgatattttcctaaagacttcaaaattttcc |
213 |
Q |
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| T |
41729608 |
ctttctgtaaatattatcaatttctttagaagatactctctttcgattcatgatttgcagtacgcagtttgatattttcctaaagacttcaaaatttgcc |
41729707 |
T |
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| Q |
214 |
agatttggcttcatatattgacatgtaatgttcatttctccagattcacgtttcatgcattatcttttaaatagttattggcaagatcaagaatgagaac |
313 |
Q |
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| T |
41729708 |
agatttggcttcatatattgacatgtaatggtcatttctctatattcacgtttcacgcattatcttttaaatagttattggcaagatcaagaatgagaac |
41729807 |
T |
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| Q |
314 |
attccacattggctctacggacaagttgatattttcaatacactagctacctgtacccttttctataaaattgtagttttaagtgataattacatatgat |
413 |
Q |
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| T |
41729808 |
attccacattggctctacggacaagttgatattttcaatacactagctacctgtactcttttctataaaattgtagttttaactgataattacctgtgat |
41729907 |
T |
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| Q |
414 |
ggaagataaccattcaagaagggaaggtttctatacttgcattgttatt |
462 |
Q |
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| T |
41729908 |
ggaagataaccattcaagaagggaaggtttctatacttgcattgttatt |
41729956 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 81; Significance: 6e-38; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 295 - 451
Target Start/End: Original strand, 1314331 - 1314492
Alignment:
| Q |
295 |
caagatcaagaatgagaacattccacattggctctacggacaagttgatattttcaatacactagctacctgt-acccttttctataaaattgtagtttt |
393 |
Q |
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| T |
1314331 |
caagatcaagaatcagaacattcaacattggctctacggacaagttgatattttcaatacactagttacctatgactcttttctataaaattgtagtatt |
1314430 |
T |
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| Q |
394 |
aagtgataattacatatg----atggaagataaccattcaagaagggaaggtttctatactt |
451 |
Q |
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| T |
1314431 |
aaccgataattacctgtgtcttatggaagataaagattcaaggagggaagctttctatactt |
1314492 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 17 - 169
Target Start/End: Original strand, 1311666 - 1311818
Alignment:
| Q |
17 |
agaggggttgttctaactagagaatttctaacttgtaaagttatactaccaaatcctacactatggtatgttactgaaactcctgtaaatatatgtactt |
116 |
Q |
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| T |
1311666 |
agaggggttgttctacctaaaggattcctaatctgtaaagttatacttccaaatcctaaattatggtatgttttttaatctccttgaaatacaagtactt |
1311765 |
T |
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| Q |
117 |
tctgtaaatattatcaatttcttaagaagatactctctttcaattcatgattt |
169 |
Q |
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| T |
1311766 |
gctgtaaatattgtcaatttctttagaagatactctcttttaattcatgattt |
1311818 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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