View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2610_low_13 (Length: 451)

Name: NF2610_low_13
Description: NF2610
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2610_low_13
NF2610_low_13
[»] chr1 (1 HSPs)
chr1 (17-441)||(32675176-32675600)
[»] chr8 (5 HSPs)
chr8 (100-234)||(8969975-8970105)
chr8 (85-247)||(19237434-19237592)
chr8 (85-247)||(19310618-19310776)
chr8 (85-145)||(16435932-16435992)
chr8 (85-138)||(9492792-9492845)
[»] chr7 (2 HSPs)
chr7 (78-145)||(9112050-9112117)
chr7 (101-247)||(11790781-11790923)
[»] chr4 (5 HSPs)
chr4 (78-145)||(7103773-7103840)
chr4 (78-145)||(7109086-7109153)
chr4 (85-145)||(40756616-40756676)
chr4 (84-137)||(28033546-28033599)
chr4 (80-136)||(2059070-2059126)
[»] chr3 (1 HSPs)
chr3 (85-139)||(19646202-19646256)
[»] chr5 (2 HSPs)
chr5 (100-145)||(32401908-32401953)
chr5 (87-139)||(27214255-27214307)
[»] chr2 (1 HSPs)
chr2 (100-139)||(26024639-26024678)


Alignment Details
Target: chr1 (Bit Score: 368; Significance: 0; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 368; E-Value: 0
Query Start/End: Original strand, 17 - 441
Target Start/End: Complemental strand, 32675600 - 32675176
Alignment:
Q  17 atttaaaacctaccgcttagctaaagctttttcaacctttaaatatgataatnnnnnnncctgccaacaactagcagcaaagtcaacacctttattatct 116  Q
    |||||||  |||||| |||||||||| |||||||||||||| ||||||||||       ||||||||||||||||||||| |||||||||||||||||||    
T  32675600 atttaaaggctaccgtttagctaaagttttttcaacctttagatatgataataaaaagacctgccaacaactagcagcaaggtcaacacctttattatct 32675501  T
Q  117 ctcaacacaacaccaataccccagttatcgaccctcctctattagatatgctccaccaatattaaacttataaaacccactaaaaataggtgtccaatta 216  Q
    ||||||||||||||||||||| |||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  32675500 ctcaacacaacaccaatacccgagttatcggccctcctctattagatatgctccatcaatattaaacttataaaacccactaaaaataggtgtccaatta 32675401  T
Q  217 agaacatatattgacaaagttaaacctccacgtcttcgtgtcttcaacaacactagtttatttgcttcttctattgactactttcgaataatcttttgac 316  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32675400 agaacatatattgacaaagttaaacctccacgtcttcgtgtcttcaacaacactagtttatttgcttcttctattgactactttcgaataatcttttgac 32675301  T
Q  317 ctcaattttgcactccatttgacatatattggtgtaaatcagcagaggacaagtatcacctcctaacttgacacaatataaccttgcaaactcatgcatg 416  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32675300 ctcaattttgcactccatttgacatatattggtgtaaatcagcagaggacaagtatcacctcctaacttgacacaatataaccttgcaaactcatgcatg 32675201  T
Q  417 tacgccacgtaacatgtggttcatc 441  Q
    |||||||||||||||||||||||||    
T  32675200 tacgccacgtaacatgtggttcatc 32675176  T

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Target: chr8 (Bit Score: 49; Significance: 7e-19; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 100 - 234
Target Start/End: Complemental strand, 8970105 - 8969975
Alignment:
Q  100 caacacctttattatctctcaacacaacaccaataccccagttatcgaccctcctctattagatatgctccaccaatattaaacttataaaacccactaa 199  Q
    ||||||||| ||||||||||| |||||||||||||||||| |||||   |||  ||||| |||  |||| || ||| ||||||||||||||| |||||||    
T  8970105 caacaccttcattatctctcaccacaacaccaataccccacttatca--cct--tctatcagacctgctgcatcaacattaaacttataaaaaccactaa 8970010  T
Q  200 aaataggtgtccaattaagaacatatattgacaaa 234  Q
    ||| ||||||||||| || | || |||||||||||    
T  8970009 aaagaggtgtccaatgaacatcacatattgacaaa 8969975  T

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Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 85 - 247
Target Start/End: Complemental strand, 19237592 - 19237434
Alignment:
Q  85 aactagcagcaaagtcaacacctttattatctctcaacacaacaccaataccccagttatcgaccctcctctattagatatgctccaccaatattaaact 184  Q
    |||||||| ||| | ||||||||| ||||||||||| | |||||||||||||||| ||||| ||   |||||||  |||||| | || |||  |||| ||    
T  19237592 aactagcaccaacgacaacaccttcattatctctcaccgcaacaccaataccccacttatc-ac---cctctatcggatatgttgcatcaacgttaagct 19237497  T
Q  185 tataaaacccactaaaaataggtgtccaattaagaacatatattgacaaagttaaacctccac 247  Q
    ||||||| |||||||||  ||||||||||| || | || |||||| |||| || |||||||||    
T  19237496 tataaaaaccactaaaaggaggtgtccaatgaacatcagatattggcaaaattgaacctccac 19237434  T

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Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 85 - 247
Target Start/End: Complemental strand, 19310776 - 19310618
Alignment:
Q  85 aactagcagcaaagtcaacacctttattatctctcaacacaacaccaataccccagttatcgaccctcctctattagatatgctccaccaatattaaact 184  Q
    |||||||| ||| | ||||||||| ||||||||||| | |||||||||||||||| ||||| ||   |||||||  |||||| | || |||  |||| ||    
T  19310776 aactagcaccaacgacaacaccttcattatctctcaccgcaacaccaataccccacttatc-ac---cctctatcggatatgttgcatcaacgttaagct 19310681  T
Q  185 tataaaacccactaaaaataggtgtccaattaagaacatatattgacaaagttaaacctccac 247  Q
    ||||||| |||||||||  ||||||||||| || | || |||||| |||| || |||||||||    
T  19310680 tataaaaaccactaaaaggaggtgtccaatgaacatcagatattggcaaaattgaacctccac 19310618  T

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Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 85 - 145
Target Start/End: Original strand, 16435932 - 16435992
Alignment:
Q  85 aactagcagcaaagtcaacacctttattatctctcaacacaacaccaataccccagttatc 145  Q
    |||||||| ||| | ||||||||| ||||||||||| |||||||||| ||||||| |||||    
T  16435932 aactagcaccaacgacaacaccttcattatctctcaccacaacaccactaccccacttatc 16435992  T

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Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 85 - 138
Target Start/End: Original strand, 9492792 - 9492845
Alignment:
Q  85 aactagcagcaaagtcaacacctttattatctctcaacacaacaccaatacccc 138  Q
    |||||||| ||| | |||||| || ||||||||||| |||||||||||||||||    
T  9492792 aactagcatcaaggacaacactttcattatctctcaccacaacaccaatacccc 9492845  T

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Target: chr7 (Bit Score: 44; Significance: 7e-16; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 78 - 145
Target Start/End: Original strand, 9112050 - 9112117
Alignment:
Q  78 tgccaacaactagcagcaaagtcaacacctttattatctctcaacacaacaccaataccccagttatc 145  Q
    ||||||||||||||||||| | ||||||||| |||||||||||  ||||||||||||||||| |||||    
T  9112050 tgccaacaactagcagcaacgacaacaccttcattatctctcacaacaacaccaataccccatttatc 9112117  T

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Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 101 - 247
Target Start/End: Original strand, 11790781 - 11790923
Alignment:
Q  101 aacacctttattatctctcaacacaacaccaataccccagttatcgaccctcctctattagatatgctccaccaatattaaacttataaaacccactaaa 200  Q
    |||||||| ||||||||||| | |||||||||||||||| ||||| ||   ||||||| |||| |||| || ||| ||||| |||||| || ||||||||    
T  11790781 aacaccttcattatctctcaccgcaacaccaataccccacttatc-ac---cctctatcagatctgctgcatcaacattaagcttatagaaaccactaaa 11790876  T
Q  201 aataggtgtccaattaagaacatatattgacaaagttaaacctccac 247  Q
    |  ||||||||||| || | || |||||| |||| ||  ||||||||    
T  11790877 aggaggtgtccaatgaacatcagatattggcaaaattggacctccac 11790923  T

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Target: chr4 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 78 - 145
Target Start/End: Complemental strand, 7103840 - 7103773
Alignment:
Q  78 tgccaacaactagcagcaaagtcaacacctttattatctctcaacacaacaccaataccccagttatc 145  Q
    |||||| |||||||| ||| | ||||||||| ||||||||||| |||||||||||||||||| |||||    
T  7103840 tgccaataactagcatcaacgacaacaccttcattatctctcaccacaacaccaataccccacttatc 7103773  T

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Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 78 - 145
Target Start/End: Complemental strand, 7109153 - 7109086
Alignment:
Q  78 tgccaacaactagcagcaaagtcaacacctttattatctctcaacacaacaccaataccccagttatc 145  Q
    |||||| |||||||| ||| | ||||||||| ||||||||||| |||||||||||||||||| |||||    
T  7109153 tgccaagaactagcaccaacgacaacaccttcattatctctcaccacaacaccaataccccacttatc 7109086  T

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Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 85 - 145
Target Start/End: Original strand, 40756616 - 40756676
Alignment:
Q  85 aactagcagcaaagtcaacacctttattatctctcaacacaacaccaataccccagttatc 145  Q
    |||||||| ||| | ||||||||| ||||||||||| ||||||||||||| |||| |||||    
T  40756616 aactagcaccaacgacaacaccttcattatctctcaccacaacaccaatatcccatttatc 40756676  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 84 - 137
Target Start/End: Complemental strand, 28033599 - 28033546
Alignment:
Q  84 caactagcagcaaagtcaacacctttattatctctcaacacaacaccaataccc 137  Q
    ||||||||| ||| | ||||| ||| ||||||||||| ||||||||||||||||    
T  28033599 caactagcatcaacgacaacatcttcattatctctcaccacaacaccaataccc 28033546  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 80 - 136
Target Start/End: Complemental strand, 2059126 - 2059070
Alignment:
Q  80 ccaacaactagcagcaaagtcaacacctttattatctctcaacacaacaccaatacc 136  Q
    ||||||||||||| ||| | | ||||||| |||||||||||  ||||||||||||||    
T  2059126 ccaacaactagcaccaacgaccacaccttcattatctctcacaacaacaccaatacc 2059070  T

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Target: chr3 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 85 - 139
Target Start/End: Original strand, 19646202 - 19646256
Alignment:
Q  85 aactagcagcaaagtcaacacctttattatctctcaacacaacaccaatacccca 139  Q
    |||||||||||| | ||||||||| ||||||||||| ||||||||||||| ||||    
T  19646202 aactagcagcaatgacaacaccttcattatctctcaccacaacaccaatatccca 19646256  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000006; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 100 - 145
Target Start/End: Original strand, 32401908 - 32401953
Alignment:
Q  100 caacacctttattatctctcaacacaacaccaataccccagttatc 145  Q
    ||||||||| ||||||||||| |||||||||||||||||| |||||    
T  32401908 caacaccttcattatctctcaccacaacaccaataccccacttatc 32401953  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 87 - 139
Target Start/End: Original strand, 27214255 - 27214307
Alignment:
Q  87 ctagcagcaaagtcaacacctttattatctctcaacacaacaccaatacccca 139  Q
    |||||||| | | ||||||||| ||||||||| | ||||||||||||||||||    
T  27214255 ctagcagctacgacaacaccttcattatctcttaccacaacaccaatacccca 27214307  T

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Target: chr2 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 100 - 139
Target Start/End: Complemental strand, 26024678 - 26024639
Alignment:
Q  100 caacacctttattatctctcaacacaacaccaatacccca 139  Q
    ||||||||| |||||||||||| |||||||||||||||||    
T  26024678 caacaccttcattatctctcaaaacaacaccaatacccca 26024639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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