View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2610_low_14 (Length: 384)
Name: NF2610_low_14
Description: NF2610
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2610_low_14 |
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| [»] scaffold0190 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 297; Significance: 1e-167; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 19 - 382
Target Start/End: Original strand, 11969813 - 11970178
Alignment:
| Q |
19 |
taggtaacacgaaatagtgtgttcatcgtcgtcttcatgttctataattttgagacggcccgcgaagggcggaaaaaatgcaagggtggaggaaagagag |
118 |
Q |
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| T |
11969813 |
taggtaacacgaaatagtgtcttcatcgtcgtcttcatgttttgtaattttgagacg-cccgcaaagggtggaaaaaatgcaagggtggaggaaagagag |
11969911 |
T |
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| Q |
119 |
catttgagttggtgaattatttggtttgatgtatctatagtttttagggggtggtgataaagaaggcctttttgattggctccaaaggggaggaattgga |
218 |
Q |
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| T |
11969912 |
gatttgagttggtgaattatttggtttgatgtttctaaagttttttgggggtggtgataaagaaggcctttttgattggctccaaaggggaggaattgga |
11970011 |
T |
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| Q |
219 |
gatcccatggggtcaaatggatttttgagtcacaacaaacattgttattgggtgcatagattttagtggtggaggggacttgaacgacactcgtagttgg |
318 |
Q |
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| T |
11970012 |
gatcccatggggtcaaatggatttttgagtcacaacaaacattgttattgggtgcatagattttagtggtggagaggacttgaacgacactcgtagttgg |
11970111 |
T |
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| Q |
319 |
tttagacaaagtg---tgatgaagacatgccaatgatttgtaatagttgatgtggttgtgtgatttc |
382 |
Q |
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| T |
11970112 |
tttagacaaagtgtgatgatgaagacatgccaatgatttgtaatagttgatatgattgtgtgatttc |
11970178 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 36; Significance: 0.00000000004; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 170 - 237
Target Start/End: Complemental strand, 15190265 - 15190198
Alignment:
| Q |
170 |
tggtgataaagaaggcctttttgattggctccaaaggggaggaattggagatcccatggggtcaaatg |
237 |
Q |
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| T |
15190265 |
tggtgataaagaaaccccttttggttggatccaaatgggaggaattgaagatcccatggggttaaatg |
15190198 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 173 - 241
Target Start/End: Complemental strand, 15744049 - 15743981
Alignment:
| Q |
173 |
tgataaagaaggcctttttgattggctccaaaggggaggaattggagatcccatggggtcaaatggatt |
241 |
Q |
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| T |
15744049 |
tgataaataaggcccttttggttgactccaaatgggaggaattgtagatcccatggtgttaaatcgatt |
15743981 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0190 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0190
Description:
Target: scaffold0190; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 173 - 241
Target Start/End: Original strand, 5479 - 5547
Alignment:
| Q |
173 |
tgataaagaaggcctttttgattggctccaaaggggaggaattggagatcccatggggtcaaatggatt |
241 |
Q |
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| T |
5479 |
tgataaagaagccccttttggttgaatccaaatgggaggaattgtagatcccatggggttagatggatt |
5547 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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