View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2610_low_16 (Length: 379)
Name: NF2610_low_16
Description: NF2610
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2610_low_16 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 338; Significance: 0; HSPs: 7)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 19 - 368
Target Start/End: Complemental strand, 10698533 - 10698184
Alignment:
| Q |
19 |
accattaatgttgtaggaagtgttcatgtatataataacatcatgggagtggaaactaatcctcaacatggccttgtagcctttattttctttgtactcc |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10698533 |
accattaatgttgtaggaagtgttcatgtatataataacatcatgggaatggaaactaatcctcaacatggccttgtagcctttattttctttgtactcc |
10698434 |
T |
|
| Q |
119 |
taggtttcctccaaattagatacccagaaaatcctaccccatttcaaatccatccaaagataacgttagtgtctattgctagttttctcctatattgtat |
218 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
10698433 |
ttggtttcctccaaattagatacccagaaaatcctaccccatttcaaatccatccaaagataacgttagtgtctattgctagttttctcctatattgttt |
10698334 |
T |
|
| Q |
219 |
ggccttttggattaagcttaagtttacaacaagggttgataccctcatggaagtgtttggttccctttcaataatttctttggtgttgatgttctttcca |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10698333 |
ggccttttggattaagcttaagtttacaacaagggttgataccctcatggaagtgtttggttccctttcaataatttctttggtgttgatgttctttcca |
10698234 |
T |
|
| Q |
319 |
gaaaattgtggactatttggatacattacaatatacacattatggttcat |
368 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10698233 |
gaaaattgtggactatttggatacattacaatatacacattatggttcat |
10698184 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 19 - 368
Target Start/End: Complemental strand, 10690597 - 10690251
Alignment:
| Q |
19 |
accattaatgttgtaggaagtgttcatgtatataataacatcatgggagtggaaactaatcctcaacatggccttgtagcctttattttctttgtactcc |
118 |
Q |
| |
|
||||| ||||||||||||||||||||||| || |||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
10690597 |
accataaatgttgtaggaagtgttcatgtc---aaaaacatcatgggagtagaaactaatcctcaacatggccttgtagccttcattttctttgtactcc |
10690501 |
T |
|
| Q |
119 |
taggtttcctccaaattagatacccagaaaatcctaccccatttcaaatccatccaaagataacgttagtgtctattgctagttttctcctatattgtat |
218 |
Q |
| |
|
| |||||||||||| ||||||| ||||||||||||||||| |||||| |||||||||||| |||||| || ||||||||||| ||||| |||||||| | |
|
|
| T |
10690500 |
ttggtttcctccaagttagatatccagaaaatcctaccccttttcaagtccatccaaagacaacgttggtatctattgctagctttctactatattgctt |
10690401 |
T |
|
| Q |
219 |
ggccttttggattaagcttaagtttacaacaagggttgataccctcatggaagtgtttggttccctttcaataatttctttggtgttgatgttctttcca |
318 |
Q |
| |
|
|||||| |||||||||||||||| | ||||||||||||||| | |||||||||||||||| |||||| ||||||| |||||||||||||| | ||| |
|
|
| T |
10690400 |
ggccttcatgattaagcttaagtttgctacaagggttgataccttgttggaagtgtttggttcactttcattaatttcattggtgttgatgttgctccca |
10690301 |
T |
|
| Q |
319 |
gaaaattgtggactatttggatacattacaatatacacattatggttcat |
368 |
Q |
| |
|
|||||||| ||| |||||||||| |||| ||||||||| |||||||||| |
|
|
| T |
10690300 |
gaaaattggggattatttggatatattatcatatacacaatatggttcat |
10690251 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 150; E-Value: 3e-79
Query Start/End: Original strand, 55 - 368
Target Start/End: Complemental strand, 10707706 - 10707393
Alignment:
| Q |
55 |
aacatcatgggagtggaaactaatcctcaacatggccttgtagcctttattttctttgtactcctaggtttcctccaaattagatacccagaaaatccta |
154 |
Q |
| |
|
|||||||||||||| ||||| || |||| |||| ||||| | ||||| ||||||||||||||||| | |||||||||||||| || ||||| ||||| | |
|
|
| T |
10707706 |
aacatcatgggagtagaaaccaaccctctacatagccttatggccttcattttctttgtactccttgctttcctccaaattacttatccagataatccca |
10707607 |
T |
|
| Q |
155 |
ccccatttcaaatccatccaaagataacgttagtgtctattgctagttttctcctatattgtatggccttttggattaagcttaagtttacaacaagggt |
254 |
Q |
| |
|
| ||||||||||||||||||| | || | || | ||| ||||||| ||||| ||||||||| | ||||||||||||||||||| |||| |||||||||| |
|
|
| T |
10707606 |
ctgcatttcaaatccatccaaaaacaatgataatctctgttgctagctttctactatattgttttgccttttggattaagcttatgtttgcaacaagggt |
10707507 |
T |
|
| Q |
255 |
tgataccctcatggaagtgtttggttccctttcaataatttctttggtgttgatgttctttccagaaaattgtggactatttggatacattacaatatac |
354 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| | | | |||||||| ||| ||||| |
|
|
| T |
10707506 |
tgataccctcatggaagtgtttggttccctttcaatagtttctttggtgttgatgttctttccagaaaattgggaaacacttggatactttatcatatat |
10707407 |
T |
|
| Q |
355 |
acattatggttcat |
368 |
Q |
| |
|
||| |||||||||| |
|
|
| T |
10707406 |
acaatatggttcat |
10707393 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 116; E-Value: 6e-59
Query Start/End: Original strand, 53 - 368
Target Start/End: Complemental strand, 10657789 - 10657474
Alignment:
| Q |
53 |
ataacatcatgggagtggaaactaatcctcaacatggccttgtagcctttattttctttgtactcctaggtttcctccaaattagatacccagaaaatcc |
152 |
Q |
| |
|
|||||||||||||||| ||||| ||||||| ||||||||| | |||| |||||||||| ||| | |||||||| |||||||| || ||| | ||||| |
|
|
| T |
10657789 |
ataacatcatgggagtagaaaccaatcctctccatggccttatgaccttccttttctttgtcctcattggtttccttcaaattagttatccaaataatcc |
10657690 |
T |
|
| Q |
153 |
taccccatttcaaatccatccaaagataacgttagtgtctattgctagttttctcctatattgtatggccttttggattaagcttaagtttacaacaagg |
252 |
Q |
| |
|
|| |||||||| ||||||||||| || | || | ||| | ||||| ||||| |||||||| | |||||||||||||||||||||||| | | ||| |
|
|
| T |
10657689 |
cactgcatttcaagcccatccaaagacaatgctactctctgtagctagctttctactatattgctttgccttttggattaagcttaagtttgctataaga |
10657590 |
T |
|
| Q |
253 |
gttgataccctcatggaagtgtttggttccctttcaataatttctttggtgttgatgttctttccagaaaattgtggactatttggatacattacaatat |
352 |
Q |
| |
|
|||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||| | ||| | || || ||| |||||||||||||||| || | |
|
|
| T |
10657589 |
cttgataccctcatggaagcgtttggttcactttcaataatttctttggtgttgatgttcatcccaaacaaatggggattatttggatacattaccattt |
10657490 |
T |
|
| Q |
353 |
acacattatggttcat |
368 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
10657489 |
acacattatggttcat |
10657474 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 105 - 368
Target Start/End: Complemental strand, 10693860 - 10693597
Alignment:
| Q |
105 |
tttctttgtactcctaggtttcctccaaattagatacccagaaaatcctaccccatttcaaatccatccaaagataacgttagtgtctattgctagtttt |
204 |
Q |
| |
|
||||||||||||||| |||||||||||||| || || ||||| || || | ||||||||||||||||||||| || | || | ||| ||||||| ||| |
|
|
| T |
10693860 |
tttctttgtactccttggtttcctccaaatcagttatccagataaacccagtgcatttcaaatccatccaaagacaatgatactctctgttgctagcttt |
10693761 |
T |
|
| Q |
205 |
ctcctatattgtatggccttttggattaagcttaagtttacaacaagggttgataccctcatggaagtgtttggttccctttcaataatttctttggtgt |
304 |
Q |
| |
|
|| |||||| | ||||||||||||||||| |||||| |||| |||||||||||| ||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
10693760 |
ctaatatattcctttgccttttggattaagctcaagtttgcaactagggttgataccttcatggaagtgtttggttccctttcaatagtttctttggtga |
10693661 |
T |
|
| Q |
305 |
tgatgttctttccagaaaattgtggactatttggatacattacaatatacacattatggttcat |
368 |
Q |
| |
|
|||||||||| ||| | ||||| ||| ||| ||||||||||| ||||||||| |||||||||| |
|
|
| T |
10693660 |
tgatgttcttcccacacaattggggaatatgtggatacattatcatatacacaatatggttcat |
10693597 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 97 - 368
Target Start/End: Complemental strand, 10634170 - 10633884
Alignment:
| Q |
97 |
gcctttattttctttgtactcctaggtttcctccaaattagatacccagaaaatcctaccccatttcaaatccatccaaagataacgttagtgtctattg |
196 |
Q |
| |
|
||||| ||||| ||||||||| | ||||||||||||||| |||| ||||||||||| ||| | ||| || |||||||||||| || ||| || ||||| | |
|
|
| T |
10634170 |
gccttcattttttttgtactcattggtttcctccaaattcgatatccagaaaatccaacctcgtttgaagtccatccaaagacaatgtttgtctctatgg |
10634071 |
T |
|
| Q |
197 |
ctagttttctcctatattgtatggccttttggattaagcttaagtttacaacaaggg---------------ttgataccctcatggaagtgtttggttc |
281 |
Q |
| |
|
|||||||| | |||||||| ||||||||||||||||| |||||||| | || |||| ||||||| ||| | || |||||||||| |
|
|
| T |
10634070 |
ctagttttttactatattgcttggccttttggattaagattaagtttgctactagggtttttgaagggaaaattgatacactccttcaaatgtttggttc |
10633971 |
T |
|
| Q |
282 |
cctttcaataatttctttggtgttgatgttctttccagaaaattgtggactatttggatacattacaatatacacattatggttcat |
368 |
Q |
| |
|
|| |||||||||||||||||| ||||||||||||| ||| ||| ||| || ||||||||||| ||||||||| ||||||||| |
|
|
| T |
10633970 |
gctctcaataatttctttggtgatgatgttctttcctaaaagttggggagtagttggatacattgtcatatacacaacatggttcat |
10633884 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 108 - 171
Target Start/End: Complemental strand, 10602668 - 10602605
Alignment:
| Q |
108 |
ctttgtactcctaggtttcctccaaattagatacccagaaaatcctaccccatttcaaatccat |
171 |
Q |
| |
|
|||||||||| | |||||||||||| | | |||||| ||||||| |||||||||||||||||| |
|
|
| T |
10602668 |
ctttgtactcattggtttcctccaattaaaataccctcaaaatcccaccccatttcaaatccat |
10602605 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 119; Significance: 1e-60; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 39 - 368
Target Start/End: Original strand, 15240253 - 15240585
Alignment:
| Q |
39 |
tgttcatgtatataataacatcatgggagtggaaactaatcctcaacatggccttgtagcctttattttctttgtactcctaggtttcctccaaattaga |
138 |
Q |
| |
|
|||||||||| |||| |||||||||||| | | ||| ||| ||| ||||| ||||| ||||| ||||| | ||| || ||||||| |||||||| | |
|
|
| T |
15240253 |
tgttcatgtacataacaacatcatgggaatagcaaccaattctcttcatggtcttgtggccttcattttttatgtgcttataggttttctccaaatctgt |
15240352 |
T |
|
| Q |
139 |
tacccagaaaatcctaccccatttcaaatccatccaaagataacgttagtgtctattgctagttttctcctatattgtatggccttttggattaagctta |
238 |
Q |
| |
|
|| ||||| ||||| || |||||| |||||||||||| || |||||| ||||||||||| ||||| ||||||| | | || |||||| |||| |||| |
|
|
| T |
15240353 |
tatccagataatcccacagtctttcaactccatccaaagacaatgttagtctctattgctagctttctactatattctttagcattttgggttaaactta |
15240452 |
T |
|
| Q |
239 |
agttt---acaacaagggttgataccctcatggaagtgtttggttccctttcaataatttctttggtgttgatgttctttccagaaaattgtggactatt |
335 |
Q |
| |
|
| ||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||| | ||||| ||| |||| |
|
|
| T |
15240453 |
aatttgatacaacaaggattgataccctcatggaagtgtttggttccctttcaataatttctttggttttgatgttcttcccacacaattggggattatt |
15240552 |
T |
|
| Q |
336 |
tggatacattacaatatacacattatggttcat |
368 |
Q |
| |
|
||||||||||| |||||||||||||||||||| |
|
|
| T |
15240553 |
tggatacattatcatatacacattatggttcat |
15240585 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 170 - 346
Target Start/End: Original strand, 15246718 - 15246894
Alignment:
| Q |
170 |
atccaaagataacgttagtgtctattgctagttttctcctatattgtatggccttttggattaagcttaagtttacaacaagggttgataccctcatgga |
269 |
Q |
| |
|
||||||||| || |||||| ||||||||||| ||||| ||||||||| |||| ||| || |||| ||||| ||| | | |||| |||||||||| | ||| |
|
|
| T |
15246718 |
atccaaagacaatgttagtctctattgctagctttctactatattgtttggcttttagggttaaacttaaatttgccagaaggcttgatacccttaagga |
15246817 |
T |
|
| Q |
270 |
agtgtttggttccctttcaataatttctttggtgttgatgttctttccagaaaattgtggactatttggatacatta |
346 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||| ||| | ||||| ||| ||| ||||||||||| |
|
|
| T |
15246818 |
agtgtttggttcgctttcaataatttctttggtgttgatgttcttcccaaagaattggggattatctggatacatta |
15246894 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 113; Significance: 4e-57; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 53 - 368
Target Start/End: Original strand, 33777246 - 33777564
Alignment:
| Q |
53 |
ataacatcatgggagtggaaactaatcctcaacatggccttgtagcctttattttctttgtactcctaggtttcctccaaattagatacccagaaaatcc |
152 |
Q |
| |
|
||||||||||||| || ||||| |||||| ||||||||| | ||||| ||||||||||||||| | |||||||| |||||||| || ||||| ||||| |
|
|
| T |
33777246 |
ataacatcatgggtgtagaaaccaatccttttcatggccttatggccttcattttctttgtactcattggtttccttcaaattagttatccagataatcc |
33777345 |
T |
|
| Q |
153 |
taccccatttcaaatccatccaaagataacgttagtgtctattgctagttttctcctatattgtatggccttttggattaagcttaagttt---acaaca |
249 |
Q |
| |
|
|| ||||||| |||||||||||| || ||| || ||||||||||| ||||| ||||||||| ||| ||||||||||||| |||||||| |||||| |
|
|
| T |
33777346 |
cactgcatttcatgtccatccaaagacaatgtttgtctctattgctagctttctactatattgtttggtcttttggattaagattaagtttaccacaaca |
33777445 |
T |
|
| Q |
250 |
agggttgataccctcatggaagtgtttggttccctttcaataatttctttggtgttgatgttctttccagaaaattgtggactatttggatacattacaa |
349 |
Q |
| |
|
|| ||||||| ||||| |||||||||||||| ||||||||| ||||||||||||| |||||| ||||| | ||||| ||| ||| | |||||||| | |
|
|
| T |
33777446 |
agaattgatacactcatagaagtgtttggttcactttcaatagtttctttggtgttaatgttccttccaaacaattggggagtatgttcatacattatca |
33777545 |
T |
|
| Q |
350 |
tatacacattatggttcat |
368 |
Q |
| |
|
|||||||| ||||||||| |
|
|
| T |
33777546 |
tatacacagcatggttcat |
33777564 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 53 - 308
Target Start/End: Original strand, 33774608 - 33774865
Alignment:
| Q |
53 |
ataacatcatgggagtggaaactaatcctcaacatggccttgtagcctttattttctttgtactcctaggtttcctccaaattagatacccagaaaatcc |
152 |
Q |
| |
|
|||||||||||||||| ||||| |||| | ||||||||| | ||||| ||||||| | |||| | |||||||| |||||||| || ||||| ||||| |
|
|
| T |
33774608 |
ataacatcatgggagtagaaaccaatcattttcatggccttatggccttcattttct--ggactcattggtttccttcaaattagttatccagataatcc |
33774705 |
T |
|
| Q |
153 |
taccccatttcaaatccatccaaagataacgttagtgtctattgctag-ttttctcctatattgtatggccttttggattaagcttaagtttacaac--- |
248 |
Q |
| |
|
|| ||||||| |||||||||||| || ||| || |||||||||| |||||| |||||||| ||| ||| |||||||| |||||||||| || |
|
|
| T |
33774706 |
cactgcatttcatgtccatccaaagacaatgtttgtcactattgctagcttttctactatattgcttggtcttctggattaatattaagtttaccacgac |
33774805 |
T |
|
| Q |
249 |
aagggttgataccctcatggaagtgtttggttccctttcaataatttctttggtgttgat |
308 |
Q |
| |
|
||| ||||||| ||||||||||||||||| || ||||||||| |||||||||||||||| |
|
|
| T |
33774806 |
aagaattgatacactcatggaagtgtttggctcactttcaatagtttctttggtgttgat |
33774865 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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