View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2610_low_19 (Length: 368)
Name: NF2610_low_19
Description: NF2610
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2610_low_19 |
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Alignment Details
Target: chr8 (Bit Score: 302; Significance: 1e-170; HSPs: 8)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 16 - 351
Target Start/End: Complemental strand, 19702405 - 19702070
Alignment:
| Q |
16 |
atgctttcgtctcaaggatttgcctcataaaccaaagaaaggtaccgggctggaaaagcaagaaacaatcaagttccgtgaatgttgtttctgcagtttg |
115 |
Q |
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| T |
19702405 |
atgctttcgtctcaaggatttgcctcataaaccaaagaaaggtaccgggctggaaaagcaagaaacaatcaagttccgtgaatgttgtttctgcagtttg |
19702306 |
T |
|
| Q |
116 |
atgcattggttttgcctcaatcttttgtgcatctttggtattatactatgtttgtcgaaattagagtgttcttatctttagctagtttatttgaatatca |
215 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19702305 |
atgcattggttttgcttcaatcttttgtgcatctttggtattatactatgtttgtcgaaattagagtgttcttatctttagctagtttatttgaatatca |
19702206 |
T |
|
| Q |
216 |
aaattcttaattagcttagttagtacnnnnnnnnnngttatttattagttcgtatgtactttgatgagatattaatttatttaaacatcaacattcttac |
315 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19702205 |
aaattcttaattagcttagttagtacttttttttttgttatttattagttcgtatgtactttgatgagatattaatttatttaaacatcaacattcttac |
19702106 |
T |
|
| Q |
316 |
tttgattagttattaatttggctagcatgatataat |
351 |
Q |
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|||||||||||||||||||||||||||||||||||| |
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| T |
19702105 |
tttgattagttattaatttggctagcatgatataat |
19702070 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 271 - 347
Target Start/End: Complemental strand, 19718971 - 19718895
Alignment:
| Q |
271 |
gtactttgatgagatattaatttatttaaacatcaacattcttactttgattagttattaatttggctagcatgata |
347 |
Q |
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| T |
19718971 |
gtactttgatgagatattaatttatttaaacatcaacattcttactttgattatttattaatttggctagcatgata |
19718895 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 18 - 124
Target Start/End: Complemental strand, 13028763 - 13028649
Alignment:
| Q |
18 |
gctttcgtctcaaggatttgcctcataaaccaaagaaaggtaccg--------ggctggaaaagcaagaaacaatcaagttccgtgaatgttgtttctgc |
109 |
Q |
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||||||||||||||| ||||||||||||||||||||||||||||| ||| | |||||||||||||||| |||||| | | ||| ||||| || |
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| T |
13028763 |
gctttcgtctcaaggttttgcctcataaaccaaagaaaggtaccgaaaagagaggcagtaaaagcaagaaacaatgaagttctgagcatgatgtttttgt |
13028664 |
T |
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| Q |
110 |
agtttgatgcattgg |
124 |
Q |
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||||||||||||||| |
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| T |
13028663 |
agtttgatgcattgg |
13028649 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 18 - 120
Target Start/End: Complemental strand, 19714072 - 19713962
Alignment:
| Q |
18 |
gctttcgtctcaaggatttgcctcataaaccaaagaaaggtaccgg--------gctggaaaagcaagaaacaatcaagttccgtgaatgttgtttctgc |
109 |
Q |
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|
|||||| |||||||| |||||||||||||||||||||||| ||||| || ||||||||||||||||||||| ||| ||| ||| ||||||||| |
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| T |
19714072 |
gctttcatctcaaggttttgcctcataaaccaaagaaaggaaccggaaagcgaggcaggaaaagcaagaaacaatcaacttctgtgcatggtgtttctgc |
19713973 |
T |
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| Q |
110 |
agtttgatgca |
120 |
Q |
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|||||||||| |
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| T |
19713972 |
ggtttgatgca |
19713962 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 67 - 129
Target Start/End: Complemental strand, 34971690 - 34971628
Alignment:
| Q |
67 |
ggaaaagcaagaaacaatcaagttccgtgaatgttgtttctgcagtttgatgcattggttttg |
129 |
Q |
| |
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||||||||||||||||||||||||| || ||| |||||||||||||||||||||||| |||| |
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| T |
34971690 |
ggaaaagcaagaaacaatcaagttctttgcatgatgtttctgcagtttgatgcattggctttg |
34971628 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 18 - 188
Target Start/End: Complemental strand, 19719210 - 19719042
Alignment:
| Q |
18 |
gctttcgtctcaaggatttgcctcataaaccaaagaaaggtaccgg--------gctggaaaagcaagaaacaatcaagttccgtgaatgttgtttctgc |
109 |
Q |
| |
|
|||||||||||||| ||||||||| ||||||||||||||||| || || ||||||||||||| ||||||||| ||| ||| ||||| ||| |
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| T |
19719210 |
gctttcgtctcaagattttgcctcagaaaccaaagaaaggtactggaaagcgaggcatgaaaagcaagaaagaatcaagttttgtgcatgatgtttatgc |
19719111 |
T |
|
| Q |
110 |
agtttgatgcattggttttgcctcaatcttttgtgcatctttggtattatactatgtttgtcgaaattagagtgttctt |
188 |
Q |
| |
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||||||||||||||||| | |||||||| |||||||| |||| ||||||||||||||||| ||||||||| |
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| T |
19719110 |
agtttgatgcattggtt-----tgaatcttttcggcatctttagtat-----tatgtttgtcgaaattacagtgttctt |
19719042 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 305 - 344
Target Start/End: Complemental strand, 19713775 - 19713736
Alignment:
| Q |
305 |
aacattcttactttgattagttattaatttggctagcatg |
344 |
Q |
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|||||||||||||||||||||| ||||||| ||||||||| |
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| T |
19713775 |
aacattcttactttgattagtttttaattttgctagcatg |
19713736 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 273 - 322
Target Start/End: Complemental strand, 19713835 - 19713786
Alignment:
| Q |
273 |
actttgatgagatattaatttatttaaacatcaacattcttactttgatt |
322 |
Q |
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||||||||||| | |||||||||||| | ||||||||| ||||||||||| |
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| T |
19713835 |
actttgatgagttgttaatttatttagatatcaacattattactttgatt |
19713786 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 18 - 124
Target Start/End: Complemental strand, 42154058 - 42153944
Alignment:
| Q |
18 |
gctttcgtctcaaggatttgcctcataaaccaaagaaaggtaccgg--------gctggaaaagcaagaaacaatcaagttccgtgaatgttgtttctgc |
109 |
Q |
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|
||||||||||||||| ||||||||||||||||||||| ||||| || || | |||| |||||||||||||||| ||| ||| ||||||||| |
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| T |
42154058 |
gctttcgtctcaaggttttgcctcataaaccaaagaagggtactggaaagagaagcaaggaaagtaagaaacaatcaagttatgtgcatgatgtttctgc |
42153959 |
T |
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| Q |
110 |
agtttgatgcattgg |
124 |
Q |
| |
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||||||||||||||| |
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| T |
42153958 |
agtttgatgcattgg |
42153944 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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