View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2610_low_22 (Length: 355)
Name: NF2610_low_22
Description: NF2610
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2610_low_22 |
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Alignment Details
Target: chr4 (Bit Score: 184; Significance: 2e-99; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 135 - 339
Target Start/End: Original strand, 26763783 - 26763987
Alignment:
| Q |
135 |
gaataatgcaaatgggttctttaattcattttactgtaaaagaaataaattagagtgagcaatgcttttatttctatctttcaattcttagttcaaaagc |
234 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26763783 |
gaataatgcaaatgggttctttaattcattttactgtaaaagaaataaattagagtgagcaatgcttttatttctatctttcaattcttagttcaaaagc |
26763882 |
T |
|
| Q |
235 |
cctgctataaatgataattgtgtttcttataaaaatttaaaacttcttgtttcaggaagnnnnnnncttgtaaacaaaaattatcgcaggcaaaatcttg |
334 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
26763883 |
cctgctataaatgataattgtgtttcttataaaaatttaaaacttcttgtttcaggaagaaaaaaacttgtaaacaaaaattatcgcaggcaaaatcttg |
26763982 |
T |
|
| Q |
335 |
ataaa |
339 |
Q |
| |
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||||| |
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|
| T |
26763983 |
ataaa |
26763987 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 11 - 293
Target Start/End: Original strand, 32138173 - 32138456
Alignment:
| Q |
11 |
catcatcatgtatcccttccctcctccttttctcacac--ttatattttatgcgatcatatgcagacgtttcctgtttgggtttcattgtatcatacctc |
108 |
Q |
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|||||||| ||| ||||||||||||||||| |||||| |||||||||||| |||||| ||| |||||||||| |||||||||||| || || | || |
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| T |
32138173 |
catcatcacatattccttccctcctccttttgtcacacatttatattttatgtgatcatgtgctgacgtttcctacttgggtttcattacattatgcttc |
32138272 |
T |
|
| Q |
109 |
ttgatttttctttattt----gtatattcagaataatgcaaatgggttctttaattcattttactgtaaaagaaataaattagagtgagcaatgctttta |
204 |
Q |
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||| ||||||||||||| ||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32138273 |
ttggtttttctttatttatttgtatatt-----tgatgcaaatgggttctttaattcattttactgtaaaagaaataaattagagtgagcaatgcttttg |
32138367 |
T |
|
| Q |
205 |
tttctatctttcaattcttagttcaaaagccctgctataaatgataattgtgtttcttataaaaatttaaaacttcttgtttcaggaag |
293 |
Q |
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||||||| ||||||||||| |||||| | ||| | | ||||| | ||||||||| ||| |||||| ||||||||| ||||||| |||| |
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| T |
32138368 |
tttctatgtttcaattctttgttcaacatccccgttgtaaataagaattgtgttccttgtaaaaaattaaaactttctgtttcatgaag |
32138456 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 11 - 134
Target Start/End: Original strand, 26763616 - 26763741
Alignment:
| Q |
11 |
catcatcatgtatcccttccctcctccttttctcacac--ttatattttatgcgatcatatgcagacgtttcctgtttgggtttcattgtatcatacctc |
108 |
Q |
| |
|
||||||||| |||||||||||||||||||||||| ||| |||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||| |
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| T |
26763616 |
catcatcatatatcccttccctcctccttttctcgcacaattatattttatgcgatcatatgcaaacgtttccttcttgggtttcattgtatcatacctc |
26763715 |
T |
|
| Q |
109 |
ttgatttttctttatttgtatattca |
134 |
Q |
| |
|
|||||||||||||||||||||||||| |
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| T |
26763716 |
ttgatttttctttatttgtatattca |
26763741 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 25 - 157
Target Start/End: Original strand, 34452670 - 34452806
Alignment:
| Q |
25 |
ccttccctcctccttttctcacac--ttatattttatgcgatcatatgcagacgtttcctgtttgggtttcattgtatcatacctcttgatt--tttctt |
120 |
Q |
| |
|
||||||||||||||||| |||||| |||||||||||| |||| ||||| |||||||||| |||||||||||| || || |||||||||| ||| || |
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| T |
34452670 |
ccttccctcctccttttgtcacacatttatattttatgtgatcgtatgctgacgtttcctacttgggtttcattacattatgcctcttgatttctttatt |
34452769 |
T |
|
| Q |
121 |
tatttgtatattcagaataatgcaaatgggttcttta |
157 |
Q |
| |
|
|| ||||||||||| ||| |||||||||||||||||| |
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|
| T |
34452770 |
taattgtatattcaaaatgatgcaaatgggttcttta |
34452806 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 132; Significance: 2e-68; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 28 - 293
Target Start/End: Complemental strand, 19764123 - 19763854
Alignment:
| Q |
28 |
tccctcctccttttctcacac--ttatattttatgcgatcatatgcagacgtttcctgtttgggtttcattgtatcatacctcttgattt--ttctttat |
123 |
Q |
| |
|
||||||||||||| |||||| |||||||||||| |||||||||| |||||||||| |||||||||||| || || ||||||||||| || |||| |
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| T |
19764123 |
tccctcctcctttggtcacacatttatattttatgtgatcatatgctgacgtttcctacttgggtttcattacattatgcctcttgatttctttatttaa |
19764024 |
T |
|
| Q |
124 |
ttgtatattcagaataatgcaaatgggttctttaattcattttactgtaaaagaaataaattagagtgagcaatgcttttatttctatctttcaattctt |
223 |
Q |
| |
|
|||| |||||| ||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||| ||||||||||| |
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|
| T |
19764023 |
ttgtttattcaaaatgatgcaaatgggttctttaattcattttactgtaaaataaataaattagagtgagcaatgcttttgtttctatgtttcaattctt |
19763924 |
T |
|
| Q |
224 |
agttcaaaagccctgctataaatgataattgtgtttcttataaaaatttaaaacttcttgtttcaggaag |
293 |
Q |
| |
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|||||| | ||| ||| ||||| | ||||||||| ||| ||||||||||||||||| ||||||| |||| |
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|
| T |
19763923 |
tgttcaacatccccgctgtaaataagaattgtgttccttgtaaaaatttaaaacttcctgtttcatgaag |
19763854 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 111; Significance: 6e-56; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 111; E-Value: 6e-56
Query Start/End: Original strand, 25 - 293
Target Start/End: Complemental strand, 20796209 - 20795940
Alignment:
| Q |
25 |
ccttccctcctccttttctcacac--ttatattttatgcgatcatatgcagacgtttcctgtttgggtttcattgtatcatacctcttgatttttcttta |
122 |
Q |
| |
|
||||||||||||||||| |||||| |||||||||||| |||||| ||| |||||||||| ||||||||||| || || |||||||||||||||||| |
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|
| T |
20796209 |
ccttccctcctccttttgtcacacatttatattttatgtgatcatgtgctgacgtttcctacatgggtttcattacattatgcctcttgatttttcttta |
20796110 |
T |
|
| Q |
123 |
ttt----gtatattcagaataatgcaaatgggttctttaattcattttactgtaaaagaaataaattagagtgagcaatgcttttatttctatctttcaa |
218 |
Q |
| |
|
||| ||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||| |||||| |
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|
| T |
20796109 |
tttatttgtatatt-----tgatgcaaatgggttctttaattcattttactgtaaaagaaataaattagattgagcaatgcttttgtttctatgtttcaa |
20796015 |
T |
|
| Q |
219 |
ttcttagttcaaaagccctgctataaatgataattgtgtttcttataaaaatttaaaacttcttgtttcaggaag |
293 |
Q |
| |
|
||||| |||||| | ||| | ||||| | ||||||||| ||| |||||||||||||||| ||||||| |||| |
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|
| T |
20796014 |
ttctttgttcaacatccccattgtaaataagaattgtgttccttgtaaaaatttaaaactttctgtttcatgaag |
20795940 |
T |
|
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