View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2610_low_25 (Length: 304)

Name: NF2610_low_25
Description: NF2610
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2610_low_25
NF2610_low_25
[»] chr4 (1 HSPs)
chr4 (12-304)||(28030086-28030378)


Alignment Details
Target: chr4 (Bit Score: 277; Significance: 1e-155; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 12 - 304
Target Start/End: Original strand, 28030086 - 28030378
Alignment:
Q  12 atcatcacgccttttgtgaattcatccatgcaaataggacagtcagtgtttttgtcaccatcaaagcttttaaccggcggcaatgctcttattgcacacc 111  Q
    |||||| ||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28030086 atcatctcgccttttgtgaattcatccacgcaaataggacaatcagtgtttttgtcaccatcaaagcttttaaccggcggcaatgctcttattgcacacc 28030185  T
Q  112 tagcaatctctgcaatcgtgccgaaagacatattgatctgctgtaaatcaactatgtaatgtcccctttccctcatagaccatgcattatttctattttc 211  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28030186 tagcaatctctgcaatcgtgccgaaagacatattgatctgctgtaaatcaactatgtaatgtcccctttccctcatagaccatgcattatttctattttc 28030285  T
Q  212 tctcatagacaatgcaatattattttgtgcaagagattcaaaaaattctctcctttcatataactgttgtatttggaccgtctcaacaaaact 304  Q
     ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28030286 cctcatagacaatgcaatattattttgtgcaagagattcaaaaaattctctcctttcatataactgttgtatttggaccgtctcaacaaaact 28030378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University