View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2610_low_28 (Length: 293)
Name: NF2610_low_28
Description: NF2610
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2610_low_28 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 257; Significance: 1e-143; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 19 - 283
Target Start/End: Original strand, 18662180 - 18662444
Alignment:
| Q |
19 |
acacagtgcacaaattccatccagattctctgataattgctgcagctgcctactattataactggatatttttccaacggattttcttaccaaagctacc |
118 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18662180 |
acacagtgcacaaattccatccagcttctctgataattgctgcagctgcctgctattataactggatatttttccaacggattttcttaccaaagctacc |
18662279 |
T |
|
| Q |
119 |
gtcaacagacttgcaaggaactgatctccacattcctaaaatttcacttctgtcctaaaattataggaactgatctccactgctacggtcggacatctta |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18662280 |
gtcaacagacttgcaaggaactgatctccacattcctaaaatttcacttctgtcctaaaattataggaactgatctccactgctacggtcggacatctta |
18662379 |
T |
|
| Q |
219 |
acatggatctgtcctatttctgctatccccagttgccaagtttcacttcttcataactgcctttg |
283 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18662380 |
acatggatctgtcctatttctgctatccccagttgccaagtttcacttcttcataactgcctttg |
18662444 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 224; Significance: 1e-123; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 19 - 283
Target Start/End: Complemental strand, 15081641 - 15081381
Alignment:
| Q |
19 |
acacagtgcacaaattccatccagattctctgataattgctgcagctgcctactattataactggatatttttccaacggattttcttaccaaagctacc |
118 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||| ||||| | ||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
15081641 |
acacagtgcacaaattccatccagcttctctgataattgctgctgctgcttgctattataactggatatttttccaacggactttcttaccaaagctacc |
15081542 |
T |
|
| Q |
119 |
gtcaacagacttgcaaggaactgatctccacattcctaaaatttcacttctgtcctaaaattataggaactgatctccactgctacggtcggacatctta |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
15081541 |
gtcaacagacttgcaaggaactgatctccacattcctaaaatttcacttctgtcctaaaattataggaactgatctccactg----agtcggacatctta |
15081446 |
T |
|
| Q |
219 |
acatggatctgtcctatttctgctatccccagttgccaagtttcacttcttcataactgcctttg |
283 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15081445 |
acatggatctgtcctatttctgctatccccagttgccaagtttcacttcttcataactgcctttg |
15081381 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University