View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2610_low_3 (Length: 745)
Name: NF2610_low_3
Description: NF2610
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2610_low_3 |
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| [»] scaffold0202 (1 HSPs) |
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| [»] scaffold0016 (2 HSPs) |
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| [»] scaffold0272 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 582; Significance: 0; HSPs: 10)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 582; E-Value: 0
Query Start/End: Original strand, 19 - 669
Target Start/End: Original strand, 31106347 - 31106997
Alignment:
| Q |
19 |
ccttgaagacactgcttcgggatgctcctgcgttcataaccttgtcatcgttgcattcgcttccttgtacaccaccgtctctctatttgtgcaagttacg |
118 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||| |
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| T |
31106347 |
ccttgaagtcactgcttcgggatgctcctgcgttcataaccttgtcatcgttgcattcgcttccttgaacaccaccgtctctctatttgtgcaagtcacg |
31106446 |
T |
|
| Q |
119 |
taagttgaagacttggaccatataatatgataatggtaaatacataatgcatttaaaatgattttgttaaatgtgatagtgtttcatgtgcatctaaaaa |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31106447 |
taagttgaagacttggaccatataatatgataatggtaaatacataatgcatttaaaatgattttgttaaatgtgatagtgtttcatgtgcatctaaaaa |
31106546 |
T |
|
| Q |
219 |
agtatcatcgtcactgtcacatacataagaggtgcactggagttgaaattcctctcagacgtcttcttaatataaggtctaaaaaataacatgcaaattc |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| || ||||||| |
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| T |
31106547 |
agtatcatcgtcactgtcacatacataagaggtgcactggtgttgaaattcctctcagacgtcttcttaatataaggtctaaaaaataatatacaaattc |
31106646 |
T |
|
| Q |
319 |
tcagcatacgaagacctataaacaacaagaaactttgaatctgtttggagataaaaaggttaatgggataatgaaaatatataaacatcttcatccaatt |
418 |
Q |
| |
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|||||||||||| |||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
31106647 |
tcagcatacgaatacctataaacaacaagaaactttggatctgttttgagataaaaaggttaatgggataatgaaaatatataagcatcttcatccaatt |
31106746 |
T |
|
| Q |
419 |
gggacccaccattgagatgataataatactaagaaaagataactgaattgagaatgaagaataaatatcttggagnnnnnnncgagcgagtaggagaaag |
518 |
Q |
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||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
31106747 |
gggacccaccattgagatgataataatactaggaaaagataactgaattgagaatgaagaataaatatcttggagaaaaaaacgagcgagtaggagaaag |
31106846 |
T |
|
| Q |
519 |
aagttataaccaccttgtagcactcttcttgagtcccacatcgatgaatacttaaaatcatacaccaaagtttacctataaaataatattagtctatatc |
618 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31106847 |
aagttataaccaccttgtagcactcttcttgagtcccacatcgatgaatacttaaaatcatacaccaaagtttacctataaaataatattagtctatatc |
31106946 |
T |
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| Q |
619 |
tatacttcatattagtgtaaccgtttggaaccaattactttgtgttcttca |
669 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
31106947 |
tatacttcatattagtgtaaccgtttggaacctattactttgtgttcttca |
31106997 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 92; E-Value: 3e-44
Query Start/End: Original strand, 96 - 227
Target Start/End: Complemental strand, 31094907 - 31094776
Alignment:
| Q |
96 |
tctctctatttgtgcaagttacgtaagttgaagacttggaccatataatatgataatggtaaatacataatgcatttaaaatgattttgttaaatgtgat |
195 |
Q |
| |
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||||||||||||||| |||||| ||||||||||||||||||||||||||||||| |||| |||||||||||| |||||||||| |||||||||||| || |
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| T |
31094907 |
tctctctatttgtgctagttacttaagttgaagacttggaccatataatatgatcatgggaaatacataatgtatttaaaatggttttgttaaatgcgac |
31094808 |
T |
|
| Q |
196 |
agtgtttcatgtgcatctaaaaaagtatcatc |
227 |
Q |
| |
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||| ||||||||||||||||||||||||||| |
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| T |
31094807 |
ggtgcttcatgtgcatctaaaaaagtatcatc |
31094776 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 96 - 231
Target Start/End: Original strand, 31050414 - 31050544
Alignment:
| Q |
96 |
tctctctatttgtgcaagttacgtaagttgaagacttggaccatataatatgataatggtaaatacataatgcatttaaaatgattttgttaaatgtgat |
195 |
Q |
| |
|
||||||||||||||| |||||| ||||||||||||||||||||||| |||||| || || ||||||||||| |||||||||| ||||||||| | |
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| T |
31050414 |
tctctctatttgtgctagttactcaagttgaagacttggaccatatagtatgatcatagttaatacataatgtatttaaaatggttttgttaa-----ac |
31050508 |
T |
|
| Q |
196 |
agtgtttcatgtgcatctaaaaaagtatcatcgtca |
231 |
Q |
| |
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|||| ||||||||||||||||||| |||||||||| |
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| T |
31050509 |
agtgcttcatgtgcatctaaaaaaacatcatcgtca |
31050544 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 48 - 164
Target Start/End: Original strand, 31042820 - 31042939
Alignment:
| Q |
48 |
gcgttcataaccttgtcatcgttgcattcgcttccttgtacaccaccgtctctctatttgtgcaagttacgtaag---ttgaagacttggaccatataat |
144 |
Q |
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|||||| ||||||||| ||||||||| | |||||| | || |||||||||||||||||||||||||||| ||| || ||||||||||||||||||| |
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| T |
31042820 |
gcgttcgtaaccttgtagtcgttgcatcctcttcctcgcacgccaccgtctctctatttgtgcaagttacagaagtaattaaagacttggaccatataat |
31042919 |
T |
|
| Q |
145 |
atgataatggtaaatacata |
164 |
Q |
| |
|
||||| ||| |||||||||| |
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| T |
31042920 |
atgatcatgataaatacata |
31042939 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 143 - 227
Target Start/End: Complemental strand, 21181654 - 21181570
Alignment:
| Q |
143 |
atatgataatggtaaatacataatgcatttaaaatgattttgttaaatgtgatagtgtttcatgtgcatctaaaaaagtatcatc |
227 |
Q |
| |
|
|||||||||||||||| | ||||| ||| ||||||||| |||||||||||| | ||||||||| ||||||||||||| |||||| |
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| T |
21181654 |
atatgataatggtaaacaattaatgtattaaaaatgattatgttaaatgtgacaatgtttcatgagcatctaaaaaagcatcatc |
21181570 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 157 - 220
Target Start/End: Complemental strand, 21150347 - 21150284
Alignment:
| Q |
157 |
aatacataatgcatttaaaatgattttgttaaatgtgatagtgtttcatgtgcatctaaaaaag |
220 |
Q |
| |
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|||| |||||| ||||||| ||||| |||||||||||| |||||||||||||||||||| |||| |
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| T |
21150347 |
aatatataatgtatttaaattgattatgttaaatgtgagagtgtttcatgtgcatctaataaag |
21150284 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 160 - 219
Target Start/End: Complemental strand, 21267230 - 21267171
Alignment:
| Q |
160 |
acataatgcatttaaaatgattttgttaaatgtgatagtgtttcatgtgcatctaaaaaa |
219 |
Q |
| |
|
|||||||||||||||||||||| |||| || |||| |||||| |||||||||||||||| |
|
|
| T |
21267230 |
acataatgcatttaaaatgattatgttgaaagtgacggtgttttatgtgcatctaaaaaa |
21267171 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 405 - 469
Target Start/End: Original strand, 31050641 - 31050702
Alignment:
| Q |
405 |
atcttcatccaattgggacccaccattgagatgataataatactaagaaaagataactgaattga |
469 |
Q |
| |
|
|||||||||||| |||| |||||||||||| |||||||||||||||||||| || |||||||| |
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|
| T |
31050641 |
atcttcatccaa---ggacacaccattgagataataataatactaagaaaagagaattgaattga |
31050702 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 712 - 745
Target Start/End: Original strand, 31107034 - 31107067
Alignment:
| Q |
712 |
gtggacaaatcttctttttgaagtcaattagatt |
745 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
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| T |
31107034 |
gtggacaaatcttctttttgaagtcaattagatt |
31107067 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 143 - 189
Target Start/End: Complemental strand, 21190588 - 21190542
Alignment:
| Q |
143 |
atatgataatggtaaatacataatgcatttaaaatgattttgttaaa |
189 |
Q |
| |
|
|||| ||||||| |||||||||||| |||||||||||||||||||| |
|
|
| T |
21190588 |
atataataatggcaaatacataatgtgtttaaaatgattttgttaaa |
21190542 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0202 (Bit Score: 85; Significance: 4e-40; HSPs: 1)
Name: scaffold0202
Description:
Target: scaffold0202; HSP #1
Raw Score: 85; E-Value: 4e-40
Query Start/End: Original strand, 91 - 231
Target Start/End: Complemental strand, 3628 - 3488
Alignment:
| Q |
91 |
caccgtctctctatttgtgcaagttacgtaagttgaagacttggaccatataatatgataatggtaaatacataatgcatttaaaatgattttgttaaat |
190 |
Q |
| |
|
|||| |||||| |||||||| |||||| |||||||||||||||||| ||||||||||| |||| |||||||||||| |||||||||| ||||||||||| |
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| T |
3628 |
caccatctctccatttgtgctagttactgaagttgaagacttggaccttataatatgatcatgggaaatacataatgtatttaaaatggttttgttaaat |
3529 |
T |
|
| Q |
191 |
gtgatagtgtttcatgtgcatctaaaaaagtatcatcgtca |
231 |
Q |
| |
|
||| |||| ||||||||| ||||||||||||||||||||| |
|
|
| T |
3528 |
gtggcagtgcttcatgtgcttctaaaaaagtatcatcgtca |
3488 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0016 (Bit Score: 51; Significance: 8e-20; HSPs: 2)
Name: scaffold0016
Description:
Target: scaffold0016; HSP #1
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 150 - 220
Target Start/End: Original strand, 65187 - 65257
Alignment:
| Q |
150 |
aatggtaaatacataatgcatttaaaatgattttgttaaatgtgatagtgtttcatgtgcatctaaaaaag |
220 |
Q |
| |
|
||||||||||| |||||| ||||| ||||||| ||||||||||||||||||||||||||||| |||||||| |
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|
| T |
65187 |
aatggtaaatatataatgtatttacaatgattatgttaaatgtgatagtgtttcatgtgcatttaaaaaag |
65257 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0016; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 147 - 194
Target Start/End: Original strand, 62015 - 62062
Alignment:
| Q |
147 |
gataatggtaaatacataatgcatttaaaatgattttgttaaatgtga |
194 |
Q |
| |
|
||||||||||||| ||| ||| |||| ||||||||||||||||||||| |
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|
| T |
62015 |
gataatggtaaattcatcatgtatttgaaatgattttgttaaatgtga |
62062 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0272 (Bit Score: 36; Significance: 0.00000000007; HSPs: 1)
Name: scaffold0272
Description:
Target: scaffold0272; HSP #1
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 143 - 194
Target Start/End: Original strand, 3441 - 3492
Alignment:
| Q |
143 |
atatgataatggtaaatacataatgcatttaaaatgattttgttaaatgtga |
194 |
Q |
| |
|
|||||||||| |||||||||||||| ||| ||||||||| |||||||||||| |
|
|
| T |
3441 |
atatgataattgtaaatacataatgtattcaaaatgattctgttaaatgtga |
3492 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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