View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2610_low_33 (Length: 271)
Name: NF2610_low_33
Description: NF2610
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2610_low_33 |
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Alignment Details
Target: chr2 (Bit Score: 244; Significance: 1e-135; HSPs: 9)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 14 - 261
Target Start/End: Complemental strand, 32205992 - 32205745
Alignment:
| Q |
14 |
caatcgatatcctctatcacaagtatagaacggttggacataccaagaataagttgcttcaagatcttattatcttgtacgtcagtgagatccaagtcat |
113 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32205992 |
caatcgatatcctctatcacaagtatagaacggttggacataccaagaataagctgcttcaagatcttattatcttgtacgtcagtgagatccaagtcat |
32205893 |
T |
|
| Q |
114 |
agatgtcatagttgagatagttagccatggctgcaatcaagctagactttccagtaccaggaggaccgtacaacaagtaaccgcgttgccaagctttccc |
213 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32205892 |
agatgtcatagttgagatagttagccatggctgcaatcaagctagactttccagtaccaggaggaccgtacaacaagtaaccgcgttgccaagctttccc |
32205793 |
T |
|
| Q |
214 |
tgttcttctataaaactctttggccttcacaaaattgtccaaatcatt |
261 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32205792 |
tgttcttctataaaactctttggccttcacaaaattgtccaaatcatt |
32205745 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 14 - 261
Target Start/End: Complemental strand, 32211713 - 32211466
Alignment:
| Q |
14 |
caatcgatatcctctatcacaagtatagaacggttggacataccaagaataagttgcttcaagatcttattatcttgtacgtcagtgagatccaagtcat |
113 |
Q |
| |
|
||||| || ||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||| ||| |||||||||||||||||| |
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| T |
32211713 |
caatcaatgtcctctatcacaagtatagaacggttggacataccaatgataagttgcttcaagctcttattatcccctacatcagtgagatccaagtcaa |
32211614 |
T |
|
| Q |
114 |
agatgtcatagttgagatagttagccatggctgcaatcaagctagactttccagtaccaggaggaccgtacaacaagtaaccgcgttgccaagctttccc |
213 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||| || |
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|
| T |
32211613 |
agatatcatagttgagatagttagccatggctgcaatcaagctagactttccagtaccaggtggaccatacaacaagtaaccgcgttgccaagcttttcc |
32211514 |
T |
|
| Q |
214 |
tgttcttctataaaactctttggccttcacaaaattgtccaaatcatt |
261 |
Q |
| |
|
|||||||||||||||||||||||| || |||||||||||||||||||| |
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|
| T |
32211513 |
tgttcttctataaaactctttggctttgacaaaattgtccaaatcatt |
32211466 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 176; E-Value: 7e-95
Query Start/End: Original strand, 14 - 261
Target Start/End: Original strand, 32111161 - 32111408
Alignment:
| Q |
14 |
caatcgatatcctctatcacaagtatagaacggttggacataccaagaataagttgcttcaagatcttattatcttgtacgtcagtgagatccaagtcat |
113 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||| | |||||||||||||||||| |||||||||| ||| | ||||||||||||||||| |
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|
| T |
32111161 |
caatcaatatcctctatcacaagtatagaacggttggacatgctgagaataagttgcttcaagctcttattatcccctacattagtgagatccaagtcat |
32111260 |
T |
|
| Q |
114 |
agatgtcatagttgagatagttagccatggctgcaatcaagctagactttccagtaccaggaggaccgtacaacaagtaaccgcgttgccaagctttccc |
213 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||| |||||||||||| |
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|
| T |
32111261 |
agatatcatagttgagatagttagccatggctgcaatcaagctagactttccagtaccaggagggccatacaacaagtaaccgcgtttccaagctttccc |
32111360 |
T |
|
| Q |
214 |
tgttcttctataaaactctttggccttcacaaaattgtccaaatcatt |
261 |
Q |
| |
|
||||||||||||||| ||||| ||| ||||||| |||||||||||||| |
|
|
| T |
32111361 |
tgttcttctataaaattctttagccctcacaaatttgtccaaatcatt |
32111408 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 14 - 261
Target Start/End: Original strand, 32182871 - 32183118
Alignment:
| Q |
14 |
caatcgatatcctctatcacaagtatagaacggttggacataccaagaataagttgcttcaagatcttattatcttgtacgtcagtgagatccaagtcat |
113 |
Q |
| |
|
||||| |||||||||||||||||||||| |||||||||||| | |||||||||||||||||| |||||||||| ||| || |||||||||||||||| |
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|
| T |
32182871 |
caatcaatatcctctatcacaagtatagcacggttggacatgctgagaataagttgcttcaaggtcttattatcccctacatcggtgagatccaagtcat |
32182970 |
T |
|
| Q |
114 |
agatgtcatagttgagatagttagccatggctgcaatcaagctagactttccagtaccaggaggaccgtacaacaagtaaccgcgttgccaagctttccc |
213 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||| |||||||||||| |
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|
| T |
32182971 |
agatatcatagttgagatagttagccatggctgcaatcaagctagactttccagtaccaggtggaccatacaacaagtaaccgcgtttccaagctttccc |
32183070 |
T |
|
| Q |
214 |
tgttcttctataaaactctttggccttcacaaaattgtccaaatcatt |
261 |
Q |
| |
|
||||||||||||||||||| | ||| ||||||| |||||||||||||| |
|
|
| T |
32183071 |
tgttcttctataaaactctctagccctcacaaatttgtccaaatcatt |
32183118 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 14 - 261
Target Start/End: Original strand, 32119183 - 32119430
Alignment:
| Q |
14 |
caatcgatatcctctatcacaagtatagaacggttggacataccaagaataagttgcttcaagatcttattatcttgtacgtcagtgagatccaagtcat |
113 |
Q |
| |
|
||||| |||||||||||||||||||||||||| |||| || |||||||||||||||||||| |||||||||| | ||| | ||||||||||||||||| |
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|
| T |
32119183 |
caatcaatatcctctatcacaagtatagaacgattgggaatgtcaagaataagttgcttcaagctcttattatcctctacattagtgagatccaagtcat |
32119282 |
T |
|
| Q |
114 |
agatgtcatagttgagatagttagccatggctgcaatcaagctagactttccagtaccaggaggaccgtacaacaagtaaccgcgttgccaagctttccc |
213 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| || |
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|
| T |
32119283 |
agatatcatagttgagatagttagccatggctgcaatcaagctagactttccagtaccaggaggaccgtacaacaagtaaccgcgtttccaagctttgcc |
32119382 |
T |
|
| Q |
214 |
tgttcttctataaaactctttggccttcacaaaattgtccaaatcatt |
261 |
Q |
| |
|
|||||||||||||||||| | || ||||||| |||||||||||||| |
|
|
| T |
32119383 |
ggttcttctataaaactctctagcactcacaaatttgtccaaatcatt |
32119430 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 14 - 261
Target Start/End: Original strand, 32158573 - 32158820
Alignment:
| Q |
14 |
caatcgatatcctctatcacaagtatagaacggttggacataccaagaataagttgcttcaagatcttattatcttgtacgtcagtgagatccaagtcat |
113 |
Q |
| |
|
||||| |||||||||||||||||||||||||| |||||||| |||||||||||||||||||| ||||||||||||||| | ||||||||| || |||| |
|
|
| T |
32158573 |
caatcaatatcctctatcacaagtatagaacgattggacatgtcaagaataagttgcttcaagcgcttattatcttgtacattagtgagatctaaatcat |
32158672 |
T |
|
| Q |
114 |
agatgtcatagttgagatagttagccatggctgcaatcaagctagactttccagtaccaggaggaccgtacaacaagtaaccgcgttgccaagctttccc |
213 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| || ||||||||||||||||||| |||||||||||| |
|
|
| T |
32158673 |
agatatcatagttgagatagttagccatggctgcaatcaaactagactttccagtaccaggagggccatacaacaagtaaccgcgtttccaagctttccc |
32158772 |
T |
|
| Q |
214 |
tgttcttctataaaactctttggccttcacaaaattgtccaaatcatt |
261 |
Q |
| |
|
||||||||||||||||||| | | | ||||||| |||||||||||||| |
|
|
| T |
32158773 |
tgttcttctataaaactctctagacctcacaaatttgtccaaatcatt |
32158820 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 156; E-Value: 6e-83
Query Start/End: Original strand, 14 - 261
Target Start/End: Original strand, 32157155 - 32157402
Alignment:
| Q |
14 |
caatcgatatcctctatcacaagtatagaacggttggacataccaagaataagttgcttcaagatcttattatcttgtacgtcagtgagatccaagtcat |
113 |
Q |
| |
|
||||| |||||||||||||||||||| | |||||||||||| | ||||| |||||||||||| |||||||||| | ||| || |||||||||||||||| |
|
|
| T |
32157155 |
caatcaatatcctctatcacaagtatcgcacggttggacatgctgagaattagttgcttcaagctcttattatcctctacatctgtgagatccaagtcat |
32157254 |
T |
|
| Q |
114 |
agatgtcatagttgagatagttagccatggctgcaatcaagctagactttccagtaccaggaggaccgtacaacaagtaaccgcgttgccaagctttccc |
213 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||| |||||||||||| |
|
|
| T |
32157255 |
agatatcatagttgagatagttagccatggctgcaatcaagctagactttccagtaccaggagggccatacaacaagtaaccgcgtttccaagctttccc |
32157354 |
T |
|
| Q |
214 |
tgttcttctataaaactctttggccttcacaaaattgtccaaatcatt |
261 |
Q |
| |
|
|||||||||||||| || || || ||||||| |||||||||||||| |
|
|
| T |
32157355 |
ggttcttctataaaattcattatccctcacaaatttgtccaaatcatt |
32157402 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 149; E-Value: 9e-79
Query Start/End: Original strand, 14 - 258
Target Start/End: Original strand, 32174832 - 32175076
Alignment:
| Q |
14 |
caatcgatatcctctatcacaagtatagaacggttggacataccaagaataagttgcttcaagatcttattatcttgtacgtcagtgagatccaagtcat |
113 |
Q |
| |
|
||||| |||||||||||||| ||||||||||| |||| || |||||||||||||||||||| ||||||||||||||| ||||||||||||||||||| |
|
|
| T |
32174832 |
caatcaatatcctctatcactagtatagaacgcttgggaatgtcaagaataagttgcttcaagcgcttattatcttgtacatcagtgagatccaagtcat |
32174931 |
T |
|
| Q |
114 |
agatgtcatagttgagatagttagccatggctgcaatcaagctagactttccagtaccaggaggaccgtacaacaagtaaccgcgttgccaagctttccc |
213 |
Q |
| |
|
|||| ||||| |||||||||||||||||||| ||||||||||||||||||||||||| ||| ||||| |||||||||||||||||| |||||||||||| |
|
|
| T |
32174932 |
agatatcatacttgagatagttagccatggcagcaatcaagctagactttccagtacaaggtggaccaaacaacaagtaaccgcgtttccaagctttccc |
32175031 |
T |
|
| Q |
214 |
tgttcttctataaaactctttggccttcacaaaattgtccaaatc |
258 |
Q |
| |
|
|||||||||| |||||||| ||| ||||||| ||||||||||| |
|
|
| T |
32175032 |
tgttcttctagaaaactctccagccctcacaaatttgtccaaatc |
32175076 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 14 - 86
Target Start/End: Original strand, 32534376 - 32534448
Alignment:
| Q |
14 |
caatcgatatcctctatcacaagtatagaacggttggacataccaagaataagttgcttcaagatcttattat |
86 |
Q |
| |
|
||||| || |||||||||||||||||||||||||||||||| ||||||||||||| | || || ||||||||| |
|
|
| T |
32534376 |
caatcaatgtcctctatcacaagtatagaacggttggacatgccaagaataagtttcctcgagctcttattat |
32534448 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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