View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2610_low_39 (Length: 248)
Name: NF2610_low_39
Description: NF2610
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2610_low_39 |
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Alignment Details
Target: chr7 (Bit Score: 219; Significance: 1e-120; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 18 - 240
Target Start/End: Original strand, 1980411 - 1980633
Alignment:
| Q |
18 |
tccaaatgatgattaattcagacaagatgcaataaattctcagaagatgctcgtggtttacttaaagctgctataagggaccctgatcctgtagttttcc |
117 |
Q |
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| T |
1980411 |
tccaaatgatgattaattcagacaagatgcaataaattctcagaagatgctcgtggtttacttaaagctgctataagggaccctgatcctgtagttttcc |
1980510 |
T |
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| Q |
118 |
ttgaaaatgagttgttgtaagttgtgctgcttaattagtaattctaaatgagttgttaaagcttgaagatttctaacattatttctagttttaaacgata |
217 |
Q |
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| T |
1980511 |
ttgaaaatgagttgttgtaagttgtgctgcttaattagtaattctaaatgagttgttgaagcttgaagatttctaacattatttctagttttaaacgata |
1980610 |
T |
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| Q |
218 |
ttttgtttgatgacttctgtgct |
240 |
Q |
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||||||||||||||||||||||| |
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| T |
1980611 |
ttttgtttgatgacttctgtgct |
1980633 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 60 - 240
Target Start/End: Original strand, 90341 - 90522
Alignment:
| Q |
60 |
gaagatgctcgtggtttacttaaagctgctataagggaccctgatcctgtagttttccttgaaaatgagttgttgtaagttgtgctgcttaattagtaat |
159 |
Q |
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| T |
90341 |
gaagatgctcgtggtttacttaaagctgctataagggaccctgatcctgtagttttccttgaaaatgagttgctgtaagttgtgctgcttaattagtaat |
90440 |
T |
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| Q |
160 |
tctaaatgagttgttaaagcttgaagatttctaacattatttctagtttt-aaacgatattttgtttgatgacttctgtgct |
240 |
Q |
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| T |
90441 |
tttaaatgagttgttgaagcttgaagatttctaacattatttctagttttaaaatgatattttatttgatgacttatgtgct |
90522 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 63 - 217
Target Start/End: Original strand, 2004429 - 2004586
Alignment:
| Q |
63 |
gatgctcgtggtttacttaaagctgctataagggaccctgatcctgtagttttccttgaaaatgagttgttgtaa---gttgtgctgcttaattagtaat |
159 |
Q |
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| T |
2004429 |
gatgctcgtggtttacttaaagctgctataagggaccccgatcctgcagttttccttgaaaatgagttgttgtaagttgttgtgctgcttaattagtaat |
2004528 |
T |
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| Q |
160 |
tctaaatgagttgttaaagcttgaagatttctaacattatttctagttttaaacgata |
217 |
Q |
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| T |
2004529 |
tctaaatgagttgttgaagcttgaaaatttctaacattatttctagttttaaacgata |
2004586 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 60 - 203
Target Start/End: Original strand, 2002803 - 2002949
Alignment:
| Q |
60 |
gaagatgctcgtggtttacttaaagctgctataagggaccctgatcctgtagttttccttgaaaatgagttgttgtaa---gttgtgctgcttaattagt |
156 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||| |||||| ||||||||||||||||||| |
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| T |
2002803 |
gaagatgctcgtggtttacttaaagctgctataagggaccccgatcctgcagttttccttgaaaatgagttattgtaagttgttgtgctgcttaattagt |
2002902 |
T |
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| Q |
157 |
aattctaaatgagttgttaaagcttgaagatttctaacattatttct |
203 |
Q |
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| T |
2002903 |
aattctaaatgcgttgttgaagcttgaagatttctaacattatttct |
2002949 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 60 - 137
Target Start/End: Original strand, 22352477 - 22352554
Alignment:
| Q |
60 |
gaagatgctcgtggtttacttaaagctgctataagggaccctgatcctgtagttttccttgaaaatgagttgttgtaa |
137 |
Q |
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|||||||| |||||||| | | |||||||||||||||||||| ||||| | ||||||||||||||||||| |||||| |
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| T |
22352477 |
gaagatgcatgtggtttattcagagctgctataagggaccctggtcctgcatttttccttgaaaatgagttcttgtaa |
22352554 |
T |
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