View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2610_low_43 (Length: 235)
Name: NF2610_low_43
Description: NF2610
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2610_low_43 |
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Alignment Details
Target: chr5 (Bit Score: 206; Significance: 1e-113; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 14 - 219
Target Start/End: Original strand, 8623434 - 8623639
Alignment:
| Q |
14 |
aacaaatttaacaacatataattctaatggcatcggcaaaaactatcacttctctatccgaggaaaacacgttcgagtcgggtttcattcgtgatgaaga |
113 |
Q |
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| T |
8623434 |
aacaaatttaacaacatataattctaatggcatcggcaaaaactatcacttctctatccgaggaaaacacgttcgagtcgggtttcattcgtgatgaaga |
8623533 |
T |
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| Q |
114 |
tgaacgtccaaaagttgcttacaaccaattcagcaacgagattccagtaatttcaattgctggaatcgacgaggtgaatggacgtagagaagagatatgc |
213 |
Q |
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| T |
8623534 |
tgaacgtccaaaagttgcttacaaccaattcagcaacgagattccagtaatttcaattgctggaatcgacgaggtgaatggacgtagagaagagatatgc |
8623633 |
T |
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| Q |
214 |
aagaag |
219 |
Q |
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|||||| |
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| T |
8623634 |
aagaag |
8623639 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 45; Significance: 9e-17; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 109 - 185
Target Start/End: Complemental strand, 32092907 - 32092831
Alignment:
| Q |
109 |
gaagatgaacgtccaaaagttgcttacaaccaattcagcaacgagattccagtaatttcaattgctggaatcgacga |
185 |
Q |
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| T |
32092907 |
gaagatgagcgtccaaaagttgcttacaacaacttcagcaacgagattccaatcatttctcttgatggaatcgacga |
32092831 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 118 - 185
Target Start/End: Complemental strand, 23311242 - 23311175
Alignment:
| Q |
118 |
cgtccaaaagttgcttacaaccaattcagcaacgagattccagtaatttcaattgctggaatcgacga |
185 |
Q |
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| T |
23311242 |
cgtccaaaagttgcttacaatcagttcagcaatgagattccaattatttctctcgcaggaatcgacga |
23311175 |
T |
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