View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2610_low_5 (Length: 612)

Name: NF2610_low_5
Description: NF2610
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2610_low_5
NF2610_low_5
[»] chr5 (11 HSPs)
chr5 (16-297)||(14642426-14642706)
chr5 (298-510)||(25764196-25764406)
chr5 (297-510)||(19858108-19858319)
chr5 (298-510)||(3466326-3466539)
chr5 (298-509)||(3514305-3514514)
chr5 (298-500)||(22527444-22527644)
chr5 (299-510)||(21145714-21145922)
chr5 (298-510)||(794511-794720)
chr5 (295-358)||(15927346-15927409)
chr5 (298-358)||(9717279-9717339)
chr5 (298-358)||(41284482-41284542)
[»] chr8 (16 HSPs)
chr8 (292-510)||(26426769-26426985)
chr8 (298-510)||(34501081-34501292)
chr8 (298-510)||(33817499-33817709)
chr8 (298-510)||(21405712-21405922)
chr8 (298-510)||(21800204-21800414)
chr8 (298-510)||(29601124-29601335)
chr8 (298-510)||(10953571-10953786)
chr8 (298-510)||(10961576-10961791)
chr8 (298-504)||(14123211-14123414)
chr8 (298-510)||(37233484-37233699)
chr8 (295-510)||(10582093-10582318)
chr8 (298-503)||(14122251-14122453)
chr8 (300-501)||(4078767-4078976)
chr8 (379-497)||(10334599-10334717)
chr8 (298-496)||(33317600-33317795)
chr8 (298-353)||(10334730-10334785)
[»] chr7 (22 HSPs)
chr7 (297-510)||(46940016-46940227)
chr7 (298-510)||(6587583-6587793)
chr7 (298-510)||(16188976-16189189)
chr7 (298-510)||(29665968-29666177)
chr7 (298-510)||(38150388-38150598)
chr7 (296-510)||(1783555-1783767)
chr7 (298-510)||(19893481-19893693)
chr7 (298-510)||(32801627-32801836)
chr7 (297-510)||(36332991-36333208)
chr7 (298-510)||(3175986-3176193)
chr7 (298-510)||(47748909-47749119)
chr7 (297-510)||(27895081-27895291)
chr7 (298-510)||(28147053-28147263)
chr7 (299-510)||(38098344-38098553)
chr7 (379-510)||(44073833-44073965)
chr7 (298-490)||(7118146-7118337)
chr7 (379-510)||(7835071-7835200)
chr7 (298-510)||(23979903-23980116)
chr7 (298-483)||(29172246-29172429)
chr7 (298-363)||(7835236-7835301)
chr7 (298-358)||(47262809-47262869)
chr7 (298-353)||(35407125-35407180)
[»] chr6 (5 HSPs)
chr6 (297-510)||(14206576-14206788)
chr6 (298-507)||(23219409-23219617)
chr6 (298-496)||(4486624-4486821)
chr6 (294-509)||(31715338-31715551)
chr6 (298-358)||(34527064-34527124)
[»] chr1 (12 HSPs)
chr1 (298-507)||(9411949-9412157)
chr1 (298-510)||(13832674-13832885)
chr1 (300-510)||(37350500-37350709)
chr1 (298-510)||(31924481-31924690)
chr1 (298-510)||(42434528-42434738)
chr1 (315-510)||(40535513-40535706)
chr1 (297-510)||(29824189-29824406)
chr1 (298-510)||(40977003-40977212)
chr1 (298-493)||(7351310-7351507)
chr1 (298-358)||(40535443-40535503)
chr1 (298-367)||(1791652-1791721)
chr1 (298-370)||(27286056-27286128)
[»] chr3 (20 HSPs)
chr3 (297-510)||(45906054-45906265)
chr3 (292-510)||(10695799-10696015)
chr3 (298-510)||(39625353-39625563)
chr3 (297-510)||(14242755-14242971)
chr3 (298-510)||(10475820-10476037)
chr3 (298-510)||(43171575-43171785)
chr3 (297-510)||(38572764-38572987)
chr3 (298-510)||(53175752-53175959)
chr3 (296-507)||(4970959-4971174)
chr3 (298-507)||(50517057-50517265)
chr3 (298-510)||(52722447-52722656)
chr3 (298-510)||(8034372-8034585)
chr3 (298-501)||(24596240-24596454)
chr3 (299-507)||(52553326-52553530)
chr3 (298-510)||(40690495-40690713)
chr3 (298-510)||(38834452-38834656)
chr3 (379-510)||(26406941-26407072)
chr3 (298-510)||(24656921-24657131)
chr3 (379-510)||(54244968-54245095)
chr3 (298-358)||(17332085-17332145)
[»] chr4 (16 HSPs)
chr4 (298-510)||(28714299-28714510)
chr4 (298-510)||(46580289-46580499)
chr4 (298-510)||(53227967-53228178)
chr4 (298-510)||(13229622-13229833)
chr4 (298-510)||(26619163-26619374)
chr4 (298-509)||(40219008-40219219)
chr4 (298-505)||(43100395-43100605)
chr4 (298-510)||(21629415-21629625)
chr4 (298-510)||(48832883-48833102)
chr4 (297-509)||(1121314-1121523)
chr4 (296-510)||(575876-576084)
chr4 (298-509)||(6890966-6891179)
chr4 (299-510)||(1124150-1124359)
chr4 (298-510)||(50435831-50436030)
chr4 (300-510)||(56038081-56038289)
chr4 (298-470)||(32129153-32129324)
[»] chr2 (12 HSPs)
chr2 (298-510)||(4391665-4391876)
chr2 (298-510)||(28439776-28439985)
chr2 (298-510)||(34599564-34599773)
chr2 (298-510)||(45463540-45463753)
chr2 (298-510)||(5003447-5003658)
chr2 (298-510)||(25459470-25459677)
chr2 (301-505)||(16492421-16492623)
chr2 (297-510)||(15381805-15382012)
chr2 (298-509)||(12131369-12131579)
chr2 (302-509)||(38903352-38903559)
chr2 (298-358)||(38033639-38033699)
chr2 (379-422)||(38033578-38033621)
[»] scaffold0208 (1 HSPs)
scaffold0208 (298-510)||(2910-3121)
[»] scaffold0054 (1 HSPs)
scaffold0054 (295-510)||(30368-30582)


Alignment Details
Target: chr5 (Bit Score: 250; Significance: 1e-138; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 250; E-Value: 1e-138
Query Start/End: Original strand, 16 - 297
Target Start/End: Original strand, 14642426 - 14642706
Alignment:
Q  16 ataccaagttttaagaaaccattaaagttgtctaagaggttagtaaaaagtcaaatcacgtgttactattttttgaaacatgtttagttagtcggtgatt 115  Q
    |||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14642426 ataccaagttttaagacaccattaaagttgtctgagaggttagtaaaaagtcaaatcacgtgttactattttttgaaacatgtttagttagtcggtgatt 14642525  T
Q  116 tgcgaaatctaaaaattatggtagagtaacacttgttttattttacttttcactcagtgggatagtcactattgttgattttattggctgtcaaaccaag 215  Q
    |||||||||||||| ||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  14642526 tgcgaaatctaaaa-ttatggtagagtaacacttattttattttacttttcactcaatgggatagtcactattgttgattttattggctgtcaaaccaag 14642624  T
Q  216 tgggggtcataaggtcacttctagaaggtcagacatggatcagttccacacagaaaatgttcatgtgctgttcaagcataac 297  Q
    ||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14642625 tgggggtcataaggtcacttctagaaggcgagacatggatcagttccacacagaaaatgttcatgtgctgttcaagcataac 14642706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 133; E-Value: 7e-69
Query Start/End: Original strand, 298 - 510
Target Start/End: Complemental strand, 25764406 - 25764196
Alignment:
Q  298 cagggccggcccatagtccgtcgaggctgggcgacgacaccaggcctccaattttttggggtccaaaatattannnnnnnnatatgtaagctacaaaaat 397  Q
    |||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||| ||||||||||         |||||||||| || |||||    
T  25764406 cagggccggcccatagcccgtcgaggctgggcgacgacaccgggcctccaattttttggggcccaaaatatt--tttttttatatgtaagccacgaaaat 25764309  T
Q  398 aatggttatatatctattaaaagcatattaattcaatttggacagcttgctttagtggcgtgttcactttttgttgagtgtgaggtcatgtgttcaagac 497  Q
    ||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||| ||  |||||||||||||||||||||||||||||||||||     
T  25764308 aatggttatatatctattaaaagcaaattaattcaatttgtacagcttgctttagtggcatggccactttttgttgagtgtgaggtcatgtgttcaagat 25764209  T
Q  498 ccaccaaagtgtg 510  Q
     ||||||||||||    
T  25764208 tcaccaaagtgtg 25764196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 122; E-Value: 3e-62
Query Start/End: Original strand, 297 - 510
Target Start/End: Complemental strand, 19858319 - 19858108
Alignment:
Q  297 ccagggccggcccatagtccgtcgaggctgggcgacgacaccaggcctccaattttttggggtccaaaatattannnnnnnnatatgtaagctacaaaaa 396  Q
    ||||||||||||||||| |||||||||||||||||||||||| |||||| |||||||||||| || |||||||         |||||||||| || ||||    
T  19858319 ccagggccggcccatagcccgtcgaggctgggcgacgacaccgggcctctaattttttggggcccgaaatatt--tttttttatatgtaagccacgaaaa 19858222  T
Q  397 taatggttatatatctattaaaagcatattaattcaatttggacagcttgctttagtggcgtgttcactttttgttgagtgtgaggtcatgtgttcaaga 496  Q
    |||||||||||||||||||||||||| ||||||| |||||| ||||||||||||||||| |||   ||||||||||||||||||||||||||||||||||    
T  19858221 taatggttatatatctattaaaagcaaattaattaaatttgtacagcttgctttagtggtgtgacaactttttgttgagtgtgaggtcatgtgttcaaga 19858122  T
Q  497 cccaccaaagtgtg 510  Q
    ||||||| ||||||    
T  19858121 cccaccatagtgtg 19858108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 118; E-Value: 7e-60
Query Start/End: Original strand, 298 - 510
Target Start/End: Original strand, 3466326 - 3466539
Alignment:
Q  298 cagggccggcccatagtccgtcgaggctgggcgacgacaccaggcctccaattttttggggtccaaaatat-tannnnnnnnatatgtaagctacaaaaa 396  Q
    |||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||| ||||||||| ||        |||||||||  |  ||||    
T  3466326 cagggccggcccatagcccgtcgaggctgggcgacgacaccgggcctccaattttttggggcccaaaatatatatttttttaatatgtaagacatgaaaa 3466425  T
Q  397 taatggttatatatctattaaaagcatattaattcaatttggacagcttgctttagtggcgtgttcactttttgttgagtgtgaggtcatgtgttcaaga 496  Q
    ||||| |||||||||||||||||||| ||| ||| |||||| |||||||||||||||||| ||  || ||||||||||||||||||||||||||||||||    
T  3466426 taatgattatatatctattaaaagcaaatttatttaatttgtacagcttgctttagtggcatggccattttttgttgagtgtgaggtcatgtgttcaaga 3466525  T
Q  497 cccaccaaagtgtg 510  Q
    ||||||||||||||    
T  3466526 cccaccaaagtgtg 3466539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 104; E-Value: 2e-51
Query Start/End: Original strand, 298 - 509
Target Start/End: Complemental strand, 3514514 - 3514305
Alignment:
Q  298 cagggccggcccatagtccgtcgaggctgggcgacgacaccaggcctccaattttttggggtccaaaatattannnnnnnnatatgtaagctacaaaaat 397  Q
    |||||||||||||||| || |||||| |||||||||||||| ||||||||||||||||||| ||||| | ||         |||||||||| ||||||||    
T  3514514 cagggccggcccatagcccatcgaggatgggcgacgacaccgggcctccaattttttggggcccaaattttt--tttttttatatgtaagccacaaaaat 3514417  T
Q  398 aatggttatatatctattaaaagcatattaattcaatttggacagcttgctttagtggcgtgttcactttttgttgagtgtgaggtcatgtgttcaagac 497  Q
     |||||||||||||||||||||||| ||||||| |||||| | ||||||||||||||| ||| ||| |||||||||||| ||||||||||||||||||||    
T  3514416 gatggttatatatctattaaaagcaaattaatttaatttgtatagcttgctttagtggtgtggtcattttttgttgagtatgaggtcatgtgttcaagac 3514317  T
Q  498 ccaccaaagtgt 509  Q
    |||  |||||||    
T  3514316 ccattaaagtgt 3514305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 103; E-Value: 6e-51
Query Start/End: Original strand, 298 - 500
Target Start/End: Complemental strand, 22527644 - 22527444
Alignment:
Q  298 cagggccggcccatagtccgtcgaggctgggcgacgacaccaggcctccaattttttggggtccaaaatattannnnnnnnatatgtaagctacaaaaat 397  Q
    |||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||| ||||||||||         |||||||||  ||||||||    
T  22527644 cagggccggcccatagcccgtcgaggctgggcgacgacaccgggcctccaattttttggggcccaaaatatt--tttttttatatgtaagacacaaaaat 22527547  T
Q  398 aatggttatatatctattaaaagcatattaattcaatttggacagcttgctttagtggcgtgttcactttttgttgagtgtgaggtcatgtgttcaagac 497  Q
    |||| |||||||||| ||||||||| | | ||| |||||| |||||||||||||||| | ||  || |||||||||||||||||||||||||||||||||    
T  22527546 aatgattatatatcttttaaaagcaaaattatttaatttgtacagcttgctttagtgacatgaccattttttgttgagtgtgaggtcatgtgttcaagac 22527447  T
Q  498 cca 500  Q
    |||    
T  22527446 cca 22527444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 100; E-Value: 4e-49
Query Start/End: Original strand, 299 - 510
Target Start/End: Complemental strand, 21145922 - 21145714
Alignment:
Q  299 agggccggcccatagtccgtcgaggctgggcgacgacaccaggcctccaattttttggggtccaaaatattannnnnnnnatatgtaagctacaaaaata 398  Q
    ||||||||||||||| |||| ||||||||||||||||||| ||||||||||||||||||| ||||| | ||         |||||||||| || ||||||    
T  21145922 agggccggcccatagcccgttgaggctgggcgacgacaccgggcctccaattttttggggcccaaattttt---ttttttatatgtaagccacgaaaata 21145826  T
Q  399 atggttatatatctattaaaagcatattaattcaatttggacagcttgctttagtggcgtgttcactttttgttgagtgtgaggtcatgtgttcaagacc 498  Q
    |||||||||||||||||||||||  ||||||||||| || | ||||||||||||||  |||  || |||||| |||||||||||||||||||||||||||    
T  21145825 atggttatatatctattaaaagcgaattaattcaatctgtatagcttgctttagtgatgtggccattttttgatgagtgtgaggtcatgtgttcaagacc 21145726  T
Q  499 caccaaagtgtg 510  Q
    ||| ||||||||    
T  21145725 cacaaaagtgtg 21145714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 93; E-Value: 6e-45
Query Start/End: Original strand, 298 - 510
Target Start/End: Original strand, 794511 - 794720
Alignment:
Q  298 cagggccggcccatagtccgtcgaggctgggcgacgacaccaggcctccaattttttggggtccaaaatattannnnnnnnatatgtaagctacaaaaat 397  Q
    ||||| ||||| |||| |||||||||||||||||||||||| ||||||||||||||||||| |||||||| |         |||||||||  || |||||    
T  794511 cagggtcggcctatagcccgtcgaggctgggcgacgacaccgggcctccaattttttggggcccaaaataat---ttttttatatgtaagacacgaaaat 794607  T
Q  398 aatggttatatatctattaaaagcatattaattcaatttggacagcttgctttagtggcgtgttcactttttgttgagtgtgaggtcatgtgttcaagac 497  Q
    |||| |||||||||||||||||| | ||  ||| |||||| | ||||||||||||| |||||  || |||||||||||||||||||||||||||||||||    
T  794608 aatgattatatatctattaaaagaaaatatattaaatttgtaaagcttgctttagtagcgtggccattttttgttgagtgtgaggtcatgtgttcaagac 794707  T
Q  498 ccaccaaagtgtg 510  Q
    ||||||| |||||    
T  794708 ccaccaatgtgtg 794720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 295 - 358
Target Start/End: Original strand, 15927346 - 15927409
Alignment:
Q  295 aaccagggccggcccatagtccgtcgaggctgggcgacgacaccaggcctccaattttttgggg 358  Q
    ||||||||||||||||||| |||||| ||||||||||||||||  |||||| ||||||| ||||    
T  15927346 aaccagggccggcccatagcccgtcggggctgggcgacgacactgggcctcaaatttttggggg 15927409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 298 - 358
Target Start/End: Original strand, 9717279 - 9717339
Alignment:
Q  298 cagggccggcccatagtccgtcgaggctgggcgacgacaccaggcctccaattttttgggg 358  Q
    |||||||||||||||| |||||| ||||||||||||||||  |||||| ||||||| ||||    
T  9717279 cagggccggcccatagcccgtcggggctgggcgacgacactgggcctcaaatttttggggg 9717339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 298 - 358
Target Start/End: Complemental strand, 41284542 - 41284482
Alignment:
Q  298 cagggccggcccatagtccgtcgaggctgggcgacgacaccaggcctccaattttttgggg 358  Q
    |||||||||||||||| |||||| |||||||||| |||| | |||||| ||||||| ||||    
T  41284542 cagggccggcccatagcccgtcggggctgggcgatgacatcgggcctcaaatttttggggg 41284482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 139; Significance: 2e-72; HSPs: 16)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 139; E-Value: 2e-72
Query Start/End: Original strand, 292 - 510
Target Start/End: Complemental strand, 26426985 - 26426769
Alignment:
Q  292 cataaccagggccggcccatagtccgtcgaggctgggcgacgacaccaggcctccaattttttggggtccaaaatattannnnnnnnatatgtaagctac 391  Q
    |||| ||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||| ||||||||||         |||||||||| |     
T  26426985 catacccagggccggcccatagcccgtcgaggctgggcgacgacaccgggcctccaattttttggggcccaaaatatt--tttttttatatgtaagccat 26426888  T
Q  392 aaaaataatggttatatatctattaaaagcatattaattcaatttggacagcttgctttagtggcgtgttcactttttgttgagtgtgaggtcatgtgtt 491  Q
     |||||||||||||||||||||||||||||| ||||||||||| || |||||||||||||||||| || |||||||||||||||||||||||||||||||    
T  26426887 gaaaataatggttatatatctattaaaagcaaattaattcaatctgtacagcttgctttagtggcatggtcactttttgttgagtgtgaggtcatgtgtt 26426788  T
Q  492 caagacccaccaaagtgtg 510  Q
    |||||||||||||||||||    
T  26426787 caagacccaccaaagtgtg 26426769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 133; E-Value: 7e-69
Query Start/End: Original strand, 298 - 510
Target Start/End: Complemental strand, 34501292 - 34501081
Alignment:
Q  298 cagggccggcccatagtccgtcgaggctgggcgacgacaccaggcctccaattttttggggtccaaaatattannnnnnnnatatgtaagctacaaaaat 397  Q
    |||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||| ||||||||||         |||||||||| || |||||    
T  34501292 cagggccggcccatagcccgtcgaggctgggcgacgacaccgggcctccaattttttggggcccaaaatatt-ttttttttatatgtaagccacgaaaat 34501194  T
Q  398 aatggttatatatctattaaaagcatattaattcaatttggacagcttgctttagtggcgtgttcactttttgttgagtgtgaggtcatgtgttcaagac 497  Q
    ||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||| ||  |||||||||||||||||||||||||||||||||||     
T  34501193 aatggttatatatctattaaaagcaaattaattcaatttgtacagcttgctttagtggcatggccactttttgttgagtgtgaggtcatgtgttcaagat 34501094  T
Q  498 ccaccaaagtgtg 510  Q
     ||||||||||||    
T  34501093 tcaccaaagtgtg 34501081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 121; E-Value: 1e-61
Query Start/End: Original strand, 298 - 510
Target Start/End: Complemental strand, 33817709 - 33817499
Alignment:
Q  298 cagggccggcccatagtccgtcgaggctgggcgacgacaccaggcctccaattttttggggtccaaaatattannnnnnnnatatgtaagctacaaaaat 397  Q
    |||||||||||||||| |||||||||||||||||||||||| |||||| |||||||||||| || |||||||         |||||||||| || |||||    
T  33817709 cagggccggcccatagcccgtcgaggctgggcgacgacaccgggcctctaattttttggggcccgaaatatt--tttttttatatgtaagccacgaaaat 33817612  T
Q  398 aatggttatatatctattaaaagcatattaattcaatttggacagcttgctttagtggcgtgttcactttttgttgagtgtgaggtcatgtgttcaagac 497  Q
    ||||||||||||||||||||||||| ||||||| |||||| ||||||||||||||||| |||   |||||||||||||||||||||||||||||||||||    
T  33817611 aatggttatatatctattaaaagcaaattaattaaatttgtacagcttgctttagtggtgtgacaactttttgttgagtgtgaggtcatgtgttcaagac 33817512  T
Q  498 ccaccaaagtgtg 510  Q
    |||||| ||||||    
T  33817511 ccaccatagtgtg 33817499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 117; E-Value: 3e-59
Query Start/End: Original strand, 298 - 510
Target Start/End: Complemental strand, 21405922 - 21405712
Alignment:
Q  298 cagggccggcccatagtccgtcgaggctgggcgacgacaccaggcctccaattttttggggtccaaaatattannnnnnnnatatgtaagctacaaaaat 397  Q
    |||||||||||||||| |||||||||||||||||| ||||| ||||||||||||||||||| ||||||||||         |||||||||  |  |||||    
T  21405922 cagggccggcccatagcccgtcgaggctgggcgacaacaccgggcctccaattttttggggcccaaaatatt--tttttttatatgtaagacatgaaaat 21405825  T
Q  398 aatggttatatatctattaaaagcatattaattcaatttggacagcttgctttagtggcgtgttcactttttgttgagtgtgaggtcatgtgttcaagac 497  Q
    ||||||||||||||||||||||||| |||  ||||||||| |||||||||||||||||| ||  ||||||||||| ||||||||||||||||||||||||    
T  21405824 aatggttatatatctattaaaagcaaattttttcaatttgtacagcttgctttagtggcatggccactttttgttaagtgtgaggtcatgtgttcaagac 21405725  T
Q  498 ccaccaaagtgtg 510  Q
    |||||||||||||    
T  21405724 ccaccaaagtgtg 21405712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 117; E-Value: 3e-59
Query Start/End: Original strand, 298 - 510
Target Start/End: Complemental strand, 21800414 - 21800204
Alignment:
Q  298 cagggccggcccatagtccgtcgaggctgggcgacgacaccaggcctccaattttttggggtccaaaatattannnnnnnnatatgtaagctacaaaaat 397  Q
    |||||||||||||||| |||||||||||||||||| ||||| ||||||||||||||||||| ||||||||||         |||||||||  |  |||||    
T  21800414 cagggccggcccatagcccgtcgaggctgggcgacaacaccgggcctccaattttttggggcccaaaatatt--tttttttatatgtaagacatgaaaat 21800317  T
Q  398 aatggttatatatctattaaaagcatattaattcaatttggacagcttgctttagtggcgtgttcactttttgttgagtgtgaggtcatgtgttcaagac 497  Q
    ||||||||||||||||||||||||| |||  ||||||||| |||||||||||||||||| ||  ||||||||||| ||||||||||||||||||||||||    
T  21800316 aatggttatatatctattaaaagcaaattttttcaatttgtacagcttgctttagtggcatggccactttttgttaagtgtgaggtcatgtgttcaagac 21800217  T
Q  498 ccaccaaagtgtg 510  Q
    |||||||||||||    
T  21800216 ccaccaaagtgtg 21800204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 117; E-Value: 3e-59
Query Start/End: Original strand, 298 - 510
Target Start/End: Complemental strand, 29601335 - 29601124
Alignment:
Q  298 cagggccggcccatagtccgtcgaggctgggcgacgacaccaggcctccaattttttggggtccaaaatattannnnnnnnatatgtaagctacaaaaat 397  Q
    |||||||||||||||| |||||||||||||||||||||||| || |||||||||||||||| ||||||||| |        |||||||||  || |||||    
T  29601335 cagggccggcccatagcccgtcgaggctgggcgacgacaccgggtctccaattttttggggcccaaaatat-attttttttatatgtaagacacgaaaat 29601237  T
Q  398 aatggttatatatctattaaaagcatattaattcaatttggacagcttgctttagtggcgtgttcactttttgttgagtgtgaggtcatgtgttcaagac 497  Q
    |||| |||||||||||||||||||| ||| |||||||||| |||||||||||||||||| ||   | |||||||||||||||||||||||||||||||||    
T  29601236 aatgattatatatctattaaaagcaaatttattcaatttgtacagcttgctttagtggcatggctattttttgttgagtgtgaggtcatgtgttcaagac 29601137  T
Q  498 ccaccaaagtgtg 510  Q
    |||||||||||||    
T  29601136 ccaccaaagtgtg 29601124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 106; E-Value: 1e-52
Query Start/End: Original strand, 298 - 510
Target Start/End: Complemental strand, 10953786 - 10953571
Alignment:
Q  298 cagggccggcccatagtccgtcgaggctgggcgacgacaccaggcctccaattttttggggtccaaaatattannnnnnnn---atatgtaagctacaaa 394  Q
    ||||||||| |||||| |||||||||||||||||||||||| ||||||||||||||||||| | ||| | ||            |||||||||| || ||    
T  10953786 cagggccggtccatagcccgtcgaggctgggcgacgacaccgggcctccaattttttggggcctaaatttttttatttttttttatatgtaagccacgaa 10953687  T
Q  395 aataatggttatatatctattaaaagcatattaattcaatttggacagcttgctttagtggcgtgttcactttttgttgagtgtgaggtcatgtgttcaa 494  Q
    |||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||| ||  || |||||| |||||||||||||||||||||||    
T  10953686 aataatggttatatatctattaaaagcaaattaattcaatttgtacagcttgctttagtggcatggccattttttgatgagtgtgaggtcatgtgttcaa 10953587  T
Q  495 gacccaccaaagtgtg 510  Q
    ||||||| ||||||||    
T  10953586 gacccacaaaagtgtg 10953571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 106; E-Value: 1e-52
Query Start/End: Original strand, 298 - 510
Target Start/End: Complemental strand, 10961791 - 10961576
Alignment:
Q  298 cagggccggcccatagtccgtcgaggctgggcgacgacaccaggcctccaattttttggggtccaaaatattannnnnnnn---atatgtaagctacaaa 394  Q
    ||||||||| |||||| |||||||||||||||||||||||| ||||||||||||||||||| | ||| | ||            |||||||||| || ||    
T  10961791 cagggccggtccatagcccgtcgaggctgggcgacgacaccgggcctccaattttttggggcctaaatttttttatttttttttatatgtaagccacgaa 10961692  T
Q  395 aataatggttatatatctattaaaagcatattaattcaatttggacagcttgctttagtggcgtgttcactttttgttgagtgtgaggtcatgtgttcaa 494  Q
    |||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||| ||  || |||||| |||||||||||||||||||||||    
T  10961691 aataatggttatatatctattaaaagcaaattaattcaatttgtacagcttgctttagtggcatggccattttttgatgagtgtgaggtcatgtgttcaa 10961592  T
Q  495 gacccaccaaagtgtg 510  Q
    ||||||| ||||||||    
T  10961591 gacccacaaaagtgtg 10961576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 298 - 504
Target Start/End: Complemental strand, 14123414 - 14123211
Alignment:
Q  298 cagggccggcccatagtccgtcgaggctgggcgacgacaccaggcctccaattttttggggtccaaaatattannnnnnnnatatgtaagctacaaaaat 397  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||         ||||| |||  ||||||||    
T  14123414 cagggccggcccatagcccgtcgaggctgggcgacgacaccaggcctccaattttttggggcccaaaatatt---ttttttatatgcaagacacaaaaat 14123318  T
Q  398 aatggttatatatctattaaaagcatattaattcaatttggacagcttgctttagtggcgtgttcactttttgttgagtgtgaggtcatgtgttcaagac 497  Q
    ||| ||||||||||||||||||||| |||| |||||| ||  |||||||||||||||||  |    ||||||||||||||||||||||| ||||||||||    
T  14123317 aattgttatatatctattaaaagcaaattatttcaatatgtgcagcttgctttagtggcaaggctgctttttgttgagtgtgaggtcatatgttcaagac 14123218  T
Q  498 ccaccaa 504  Q
    | |||||    
T  14123217 ctaccaa 14123211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 98; E-Value: 6e-48
Query Start/End: Original strand, 298 - 510
Target Start/End: Original strand, 37233484 - 37233699
Alignment:
Q  298 cagggccggcccatagtccgtcgaggctgggcgacgacaccaggcctccaattttttggggtccaaaa---tattannnnnnnnatatgtaagctacaaa 394  Q
    ||||||||| |||||| |||||||||||||||||||||||  ||||||||||||||||||| |||||    | ||         |||||||||| || ||    
T  37233484 cagggccggtccatagcccgtcgaggctgggcgacgacactgggcctccaattttttggggcccaaatatttttttttatttttatatgtaagccacgaa 37233583  T
Q  395 aataatggttatatatctattaaaagcatattaattcaatttggacagcttgctttagtggcgtgttcactttttgttgagtgtgaggtcatgtgttcaa 494  Q
    |||||||||||||||||||||||||||| |||||||  ||||| | ||||||||||||||| |||  ||||||||| |||||||||||||||||||||||    
T  37233584 aataatggttatatatctattaaaagcaaattaatttgatttgtaaagcttgctttagtggtgtggccactttttgatgagtgtgaggtcatgtgttcaa 37233683  T
Q  495 gacccaccaaagtgtg 510  Q
    ||||||| ||||||||    
T  37233684 gacccacaaaagtgtg 37233699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 95; E-Value: 4e-46
Query Start/End: Original strand, 295 - 510
Target Start/End: Original strand, 10582093 - 10582318
Alignment:
Q  295 aaccagggccggcccatagtccgtcgaggctgggcgacgacaccaggcctccaattttttggggtccaaaat----------attannnnnnnnatatgt 384  Q
    ||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||| ||||  |          |||         ||||||    
T  10582093 aaccagggccggcccatagcccgtcgaggctgggcgacgacaccgggcctccaattttttggggcccaatttttttatttttatttttatttttatatgt 10582192  T
Q  385 aagctacaaaaataatggttatatatctattaaaagcatattaattcaatttggacagcttgctttagtggcgtgttcactttttgttgagtgtgaggtc 484  Q
    |||| || |||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||     |||||||| |||||||||||||    
T  10582193 aagccacgaaaataatggttatatatctattaaaagcaaattaattcaatttgtacagcttgctttagtggcgcagctactttttgatgagtgtgaggtc 10582292  T
Q  485 atgtgttcaagacccaccaaagtgtg 510  Q
    ||||||||||||||||| || |||||    
T  10582293 atgtgttcaagacccacaaaggtgtg 10582318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 298 - 503
Target Start/End: Complemental strand, 14122453 - 14122251
Alignment:
Q  298 cagggccggcccatagtccgtcgaggctgggcgacgacaccaggcctccaattttttggggtccaaaatattannnnnnnnatatgtaagctacaaaaat 397  Q
    |||||||||||||||| |||||||||||||| ||||||||| | ||||||||||||||||  ||||||||||         ||||| |||  || |||||    
T  14122453 cagggccggcccatagcccgtcgaggctgggtgacgacaccggacctccaattttttgggacccaaaatatt---ttttttatatgcaagacacgaaaat 14122357  T
Q  398 aatggttatatatctattaaaagcatattaattcaatttggacagcttgctttagtggcgtgttcactttttgttgagtgtgaggtcatgtgttcaagac 497  Q
    ||||||||||||||||||||||| | | || |||||||||  |||||||||| |||||| |  || ||||||||||||||||||||||||||||||||||    
T  14122356 aatggttatatatctattaaaagaaaactatttcaatttgtgcagcttgcttcagtggcattgtcgctttttgttgagtgtgaggtcatgtgttcaagac 14122257  T
Q  498 ccacca 503  Q
    ||||||    
T  14122256 ccacca 14122251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 300 - 501
Target Start/End: Original strand, 4078767 - 4078976
Alignment:
Q  300 gggccggcccatagtccgtcgaggctgggcgacgacaccaggcctccaattttttggggtccaaaata--------ttannnnnnnnatatgtaagctac 391  Q
    |||||||||||||| ||||||||||||||| |||| ||| ||||| ||||||||||||| | ||||||        ||         |||||||||  ||    
T  4078767 gggccggcccatagcccgtcgaggctgggcaacgataccgggccttcaattttttggggcctaaaataattttttttttttttttttatatgtaagacac 4078866  T
Q  392 aaaaataatggttatatatctattaaaagcatattaattcaatttggacagcttgctttagtggcgtgttcactttttgttgagtgtgaggtcatgtgtt 491  Q
     |||||||||||||||||||||||||||||| ||||||| |||||| ||||||||||||||||| |||  ||||||||||||||||||||||||||||||    
T  4078867 gaaaataatggttatatatctattaaaagcaaattaatttaatttgtacagcttgctttagtggtgtggccactttttgttgagtgtgaggtcatgtgtt 4078966  T
Q  492 caagacccac 501  Q
    ||||||||||    
T  4078967 caagacccac 4078976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 379 - 497
Target Start/End: Complemental strand, 10334717 - 10334599
Alignment:
Q  379 atatgtaagctacaaaaataatggttatatatctattaaaagcatattaattcaatttggacagcttgctttagtggcgtgttcactttttgttgagtgt 478  Q
    |||||||||| |  |||||||||||||||||||||||||||||| |||||||||| ||| |||| ||||||||||||| ||  ||||||||| |||||||    
T  10334717 atatgtaagccatgaaaataatggttatatatctattaaaagcaaattaattcaaattgtacagtttgctttagtggcatggccactttttgatgagtgt 10334618  T
Q  479 gaggtcatgtgttcaagac 497  Q
    |||||||||||||||||||    
T  10334617 gaggtcatgtgttcaagac 10334599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 298 - 496
Target Start/End: Original strand, 33317600 - 33317795
Alignment:
Q  298 cagggccggcccatagtccgtcgaggctgggcgacgacaccaggcctccaattttttggggtccaaaatattannnnnnnnatatgtaagctacaaaaat 397  Q
    ||||||||||| |||| |||| |||||||||||||||||||  ||||||||||||||| || ||||||||||         | |||||||  |  |||||    
T  33317600 cagggccggcctatagcccgttgaggctgggcgacgacaccgcgcctccaattttttgaggcccaaaatatt---ttttttaaatgtaagacatgaaaat 33317696  T
Q  398 aatggttatatatctattaaaagcatattaattcaatttggacagcttgctttagtggcgtgttcactttttgttgagtgtgaggtcatgtgttcaaga 496  Q
    ||||||||||||| ||||||||||| |||| |  |||||| ||||||||||| |||||||||  || | ||| ||||||||||||||||||||||||||    
T  33317697 aatggttatatatgtattaaaagcaaattattctaatttgtacagcttgcttcagtggcgtggccaatatttattgagtgtgaggtcatgtgttcaaga 33317795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 298 - 353
Target Start/End: Complemental strand, 10334785 - 10334730
Alignment:
Q  298 cagggccggcccatagtccgtcgaggctgggcgacgacaccaggcctccaattttt 353  Q
    |||||||||||||||| || ||||||||||||||||||||| ||||||||||||||    
T  10334785 cagggccggcccatagcccttcgaggctgggcgacgacaccgggcctccaattttt 10334730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 138; Significance: 8e-72; HSPs: 22)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 138; E-Value: 8e-72
Query Start/End: Original strand, 297 - 510
Target Start/End: Original strand, 46940016 - 46940227
Alignment:
Q  297 ccagggccggcccatagtccgtcgaggctgggcgacgacaccaggcctccaattttttggggtccaaaatattannnnnnnnatatgtaagctacaaaaa 396  Q
    ||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||| ||||||||||         |||||||||| || ||||    
T  46940016 ccagggccggcccatagcccgtcgaggctgggcgacgacaccgggcctccaattttttggggcccaaaatatt--tttttttatatgtaagccacgaaaa 46940113  T
Q  397 taatggttatatatctattaaaagcatattaattcaatttggacagcttgctttagtggcgtgttcactttttgttgagtgtgaggtcatgtgttcaaga 496  Q
    |||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||  |||||||||||||||||||||||||||||||||||    
T  46940114 taatggttatatatctattaaaagcaaattaattcaatttgtacagcttgctttagtggcgtggccactttttgttgagtgtgaggtcatgtgttcaaga 46940213  T
Q  497 cccaccaaagtgtg 510  Q
      ||||||||||||    
T  46940214 ttcaccaaagtgtg 46940227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 137; E-Value: 3e-71
Query Start/End: Original strand, 298 - 510
Target Start/End: Complemental strand, 6587793 - 6587583
Alignment:
Q  298 cagggccggcccatagtccgtcgaggctgggcgacgacaccaggcctccaattttttggggtccaaaatattannnnnnnnatatgtaagctacaaaaat 397  Q
    |||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||| ||||||||||         |||||||||| || |||||    
T  6587793 cagggccggcccatagcccgtcgaggctgggcgacgacaccgggcctccaattttttggggcccaaaatatt--tttttttatatgtaagccacgaaaat 6587696  T
Q  398 aatggttatatatctattaaaagcatattaattcaatttggacagcttgctttagtggcgtgttcactttttgttgagtgtgaggtcatgtgttcaagac 497  Q
    ||||||||||||||||||||||||| |||||||||||||| | |||||||||||||||||||  ||||||||||||||||||||||||||||||||||||    
T  6587695 aatggttatatatctattaaaagcaaattaattcaatttgtatagcttgctttagtggcgtggccactttttgttgagtgtgaggtcatgtgttcaagac 6587596  T
Q  498 ccaccaaagtgtg 510  Q
     ||||||||||||    
T  6587595 tcaccaaagtgtg 6587583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 126; E-Value: 1e-64
Query Start/End: Original strand, 298 - 510
Target Start/End: Complemental strand, 16189189 - 16188976
Alignment:
Q  298 cagggccggcccatagtccgtcgaggctgggcgacgacaccaggcctccaattttttggggtccaaa-atattannnnnnnnatatgtaagctacaaaaa 396  Q
    |||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||| ||||| || |||        |||||||||| || ||||    
T  16189189 cagggccggcccatagcccgtcgaggctgggcgacgacaccgggcctccaattttttggggcccaaatattttattttttttatatgtaagccacgaaaa 16189090  T
Q  397 taatggttatatatctattaaaagcatattaattcaatttggacagcttgctttagtggcgtgttcactttttgttgagtgtgaggtcatgtgttcaaga 496  Q
    |||||||||||||||||||||||||| ||||||| |||||| |||||||||||||||||||||   |||||||| |||||||||||||||||||||||||    
T  16189089 taatggttatatatctattaaaagcaaattaattaaatttgtacagcttgctttagtggcgtggcaactttttgatgagtgtgaggtcatgtgttcaaga 16188990  T
Q  497 cccaccaaagtgtg 510  Q
    ||||| ||||||||    
T  16188989 cccacaaaagtgtg 16188976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 121; E-Value: 1e-61
Query Start/End: Original strand, 298 - 510
Target Start/End: Original strand, 29665968 - 29666177
Alignment:
Q  298 cagggccggcccatagtccgtcgaggctgggcgacgacaccaggcctccaattttttggggtccaaaatattannnnnnnnatatgtaagctacaaaaat 397  Q
    |||||||||||||||| |||||||||||||||||||||||| ||||||||| ||||||||| ||||| | ||         |||||||||| || |||||    
T  29665968 cagggccggcccatagcccgtcgaggctgggcgacgacaccgggcctccaactttttggggcccaaattttt---ttttttatatgtaagccacgaaaat 29666064  T
Q  398 aatggttatatatctattaaaagcatattaattcaatttggacagcttgctttagtggcgtgttcactttttgttgagtgtgaggtcatgtgttcaagac 497  Q
    ||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||  || |||||| ||||||||||||||||||||||||||    
T  29666065 aatggttatatatctattaaaagcaaattaattcaatttgtacagcttgctttagtggcgtggccattttttgatgagtgtgaggtcatgtgttcaagac 29666164  T
Q  498 ccaccaaagtgtg 510  Q
    |||| ||||||||    
T  29666165 ccacaaaagtgtg 29666177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 121; E-Value: 1e-61
Query Start/End: Original strand, 298 - 510
Target Start/End: Original strand, 38150388 - 38150598
Alignment:
Q  298 cagggccggcccatagtccgtcgaggctgggcgacgacaccaggcctccaattttttggggtccaaaatattannnnnnnnatatgtaagctacaaaaat 397  Q
    |||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||| ||||||||||         |||||||||  || |||||    
T  38150388 cagggccggcccatagcccgtcgaggctgggcgacgacaccgggcctccaattttttggggcccaaaatatt-tttttttaatatgtaagacacgaaaat 38150486  T
Q  398 aatggttatatatctattaaaagcatattaattcaatttggacagcttgctttagtggcgtgttcactttttgttgagtgtgaggtcatgtgttcaagac 497  Q
    |||| |||||||||||||||||||  ||||||| ||||||  ||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||    
T  38150487 aatgattatatatctattaaaagcgaattaatttaatttgt-cagcttgctttagtggcgtggccactttttgttgagtgtgaggtcatgtgttcaagac 38150585  T
Q  498 ccaccaaagtgtg 510  Q
    |||||||||||||    
T  38150586 ccaccaaagtgtg 38150598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 119; E-Value: 2e-60
Query Start/End: Original strand, 296 - 510
Target Start/End: Original strand, 1783555 - 1783767
Alignment:
Q  296 accagggccggcccatagtccgtcgaggctgggcgacgacaccaggcctccaattttttggggtccaaaatattannnnnnnnatatgtaagctacaaaa 395  Q
    |||||||| ||||||||| |||||||||||||||||||||||| ||||||||| ||||||||| ||||| | ||         |||||||||| || |||    
T  1783555 accagggctggcccatagcccgtcgaggctgggcgacgacaccgggcctccaactttttggggcccaaattttt--tttttttatatgtaagccacgaaa 1783652  T
Q  396 ataatggttatatatctattaaaagcatattaattcaatttggacagcttgctttagtggcgtgttcactttttgttgagtgtgaggtcatgtgttcaag 495  Q
    ||||||||||||||||||||||||||| ||||||| |||||| |||||||||||||||||||||  ||||||||| ||||||||||||||||||||||||    
T  1783653 ataatggttatatatctattaaaagcaaattaatttaatttgtacagcttgctttagtggcgtggccactttttgatgagtgtgaggtcatgtgttcaag 1783752  T
Q  496 acccaccaaagtgtg 510  Q
    |||||| ||||||||    
T  1783753 acccacaaaagtgtg 1783767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 109; E-Value: 2e-54
Query Start/End: Original strand, 298 - 510
Target Start/End: Complemental strand, 19893693 - 19893481
Alignment:
Q  298 cagggccggcccatagtccgtcgaggctgggcgacgacaccaggcctccaattttttggggtccaaaatattannnnnnnnatatgtaagctacaaaaat 397  Q
    |||||||||||||||| ||||||||| |||||||| ||||| ||||||||||||||||||| |||||||| |         |||||||||  |  |||||    
T  19893693 cagggccggcccatagcccgtcgaggatgggcgacaacaccgggcctccaattttttggggcccaaaataattttttttttatatgtaagacatgaaaat 19893594  T
Q  398 aatggttatatatctattaaaagcatattaattcaatttggacagcttgctttagtggcgtgttcactttttgttgagtgtgaggtcatgtgttcaagac 497  Q
    |||| |||||||||||||||||||| |||  || |||||| ||| |||||||||||||||||  ||||||||||||||||||||||||||||||||||||    
T  19893593 aatgattatatatctattaaaagcaaatttttttaatttgtacaacttgctttagtggcgtgaccactttttgttgagtgtgaggtcatgtgttcaagac 19893494  T
Q  498 ccaccaaagtgtg 510  Q
    |||||||||||||    
T  19893493 ccaccaaagtgtg 19893481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 109; E-Value: 2e-54
Query Start/End: Original strand, 298 - 510
Target Start/End: Complemental strand, 32801836 - 32801627
Alignment:
Q  298 cagggccggcccatagtccgtcgaggctgggcgacgacaccaggcctccaattttttggggtccaaaatattannnnnnnnatatgtaagctacaaaaat 397  Q
    |||||||||||||||  |||||||||||||||||||||||  || |||||||||||||||  ||||||||||         |||||||||  |  |||||    
T  32801836 cagggccggcccataacccgtcgaggctgggcgacgacactgggtctccaattttttgggacccaaaatatt---ttttttatatgtaagacatgaaaat 32801740  T
Q  398 aatggttatatatctattaaaagcatattaattcaatttggacagcttgctttagtggcgtgttcactttttgttgagtgtgaggtcatgtgttcaagac 497  Q
    ||||||||||||||||||||||||| |||  ||||||||| |||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||    
T  32801739 aatggttatatatctattaaaagcaaattttttcaatttgtacagcttgctttagtggcgtggccactttttgttgagtgtgaggtcatgtgttcaagac 32801640  T
Q  498 ccaccaaagtgtg 510  Q
    |||||||| ||||    
T  32801639 ccaccaaaatgtg 32801627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 105; E-Value: 4e-52
Query Start/End: Original strand, 297 - 510
Target Start/End: Complemental strand, 36333208 - 36332991
Alignment:
Q  297 ccagggccggcccatagtccgtcgaggctgggcgacgacaccaggcctccaattttttggggtccaaaatattannnnnnnn----atatgtaagctaca 392  Q
    ||||||||||||||||| |||||||| ||||||||||||||| ||||||||||||||||||| ||||  | ||             |||||||||| ||     
T  36333208 ccagggccggcccatagcccgtcgagactgggcgacgacaccgggcctccaattttttggggcccaatttttttttttttttttttatatgtaagccacg 36333109  T
Q  393 aaaataatggttatatatctattaaaagcatattaattcaatttggacagcttgctttagtggcgtgttcactttttgttgagtgtgaggtcatgtgttc 492  Q
    |||||||||||||||||||||||||||||| ||||||| |||||| ||||||||||||||||| |||  ||||||||| |||||||||||||||||||||    
T  36333108 aaaataatggttatatatctattaaaagcaaattaatttaatttgtacagcttgctttagtggtgtggccactttttgatgagtgtgaggtcatgtgttc 36333009  T
Q  493 aagacccaccaaagtgtg 510  Q
    ||||||||| ||||||||    
T  36333008 aagacccacaaaagtgtg 36332991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 298 - 510
Target Start/End: Complemental strand, 3176193 - 3175986
Alignment:
Q  298 cagggccggcccatagtccgtcgaggctgggcgacgacaccaggcctccaattttttggggtccaaaatattannnnnnnnatatgtaagctacaaaaat 397  Q
    |||||||||||||||| |||||||||||||||||||||||| ||||||||||||| ||||| | ||||||||         |||||||||  || |||||    
T  3176193 cagggccggcccatagcccgtcgaggctgggcgacgacaccgggcctccaattttatggggcctaaaatatt---ttttttatatgtaagacacgaaaat 3176097  T
Q  398 aatggttatatatctattaaaagcatattaattcaatttggacagcttgctttagtggcgtgttcactttttgttgagtgtgaggtcatgtgttcaagac 497  Q
    |||| |||||||||||||||||||  ||| ||||||| || |||||||||||||||||||||  || ||||||||||||||||||||  |||||||||||    
T  3176096 aatgattatatatctattaaaagcgaatttattcaatctgtacagcttgctttagtggcgtgaccattttttgttgagtgtgaggtc--gtgttcaagac 3175999  T
Q  498 ccaccaaagtgtg 510  Q
    |||||||||||||    
T  3175998 ccaccaaagtgtg 3175986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 101; E-Value: 9e-50
Query Start/End: Original strand, 298 - 510
Target Start/End: Complemental strand, 47749119 - 47748909
Alignment:
Q  298 cagggccggcccatagtccgtcgaggctgggcgacgacaccaggcctccaattttttggggtccaaaatattannnnnnnnatatgtaagctacaaaaat 397  Q
    |||||||||||||||| ||||||||||||||||| |||||| |||||||||||||||| || ||||||||||         |||||||||  || |||||    
T  47749119 cagggccggcccatagcccgtcgaggctgggcgatgacaccgggcctccaattttttgcggcccaaaatatt--tttttttatatgtaagacacgaaaat 47749022  T
Q  398 aatggttatatatctattaaaagcatattaattcaatttggacagcttgctttagtggcgtgttcactttttgttgagtgtgaggtcatgtgttcaagac 497  Q
    |||| |||||||||||||||||||| ||| | ||||||||  |||||||| |||||||||||   | ||||||||||||||||||||||||||||||||     
T  47749021 aatgattatatatctattaaaagcaaatttaatcaatttgtgcagcttgccttagtggcgtggctattttttgttgagtgtgaggtcatgtgttcaagat 47748922  T
Q  498 ccaccaaagtgtg 510  Q
    |||||||||||||    
T  47748921 ccaccaaagtgtg 47748909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 297 - 510
Target Start/End: Original strand, 27895081 - 27895291
Alignment:
Q  297 ccagggccggcccatagtccgtcgaggctgggcgacgacaccaggcctccaattttttggggtccaaaatattannnnnnnnatatgtaagctacaaaaa 396  Q
    ||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||  |||  | ||         |||||||||| || ||||    
T  27895081 ccagggccggcccatagcccgtcgaggctgggcgacgacaccgggcctccaattttttggggctcaatttttt---ttttttatatgtaagccacgaaaa 27895177  T
Q  397 taatggttatatatctattaaaagcatattaattcaatttggacagcttgctttagtggcgtgttcactttttgttgagtgtgaggtcatgtgttcaaga 496  Q
    |||||||||||||||||||||||||  | ||||| ||| || | ||||||||||||||| |||  ||||||||| ||||||| |||||||||||||||||    
T  27895178 taatggttatatatctattaaaagcgaactaatttaatatgtatagcttgctttagtggtgtggccactttttgatgagtgtaaggtcatgtgttcaaga 27895277  T
Q  497 cccaccaaagtgtg 510  Q
    ||||| ||||||||    
T  27895278 cccacaaaagtgtg 27895291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 93; E-Value: 6e-45
Query Start/End: Original strand, 298 - 510
Target Start/End: Original strand, 28147053 - 28147263
Alignment:
Q  298 cagggccggcccatagtccgtcgaggctgggcgacgacaccaggcctccaattttttggggtccaaaatattannnnnnnnatatgtaagctacaaaaat 397  Q
    ||||||||||| |||| |||||||||||| ||||||||| | ||||||||||||||||||| ||||||||||         |||||||||  || ||| |    
T  28147053 cagggccggcctatagcccgtcgaggctgagcgacgacatcgggcctccaattttttggggcccaaaatatt--ttttttaatatgtaagacacgaaagt 28147150  T
Q  398 aatggttatatatctattaaaagcatattaattcaatttggacagcttgctttagtggcgtgttcactttttgttgagtgtgaggtcatgtgttcaagac 497  Q
    |||| |||||||| ||||||||||| ||  ||| |||||  |||||||||||||||||| || | | |||||||||||||||||||||||||||||||||    
T  28147151 aatgattatatatatattaaaagcaaatctatttaatttacacagcttgctttagtggcatggtaattttttgttgagtgtgaggtcatgtgttcaagac 28147250  T
Q  498 ccaccaaagtgtg 510  Q
    |||||||||||||    
T  28147251 ccaccaaagtgtg 28147263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 299 - 510
Target Start/End: Complemental strand, 38098553 - 38098344
Alignment:
Q  299 agggccggcccatagtccgtcgaggctgggcgacgacaccaggcctccaattttttggggtccaaaatattannnnnnnnatatgtaagctacaaaaata 398  Q
    ||||||||||||||| |||||||||||||| ||||||| | |||| |||||||||||||| ||||||||||          ||||||||  || |||| |    
T  38098553 agggccggcccatagcccgtcgaggctgggagacgacatcgggccaccaattttttggggcccaaaatattttattttt--tatgtaagacacgaaaaga 38098456  T
Q  399 atggttatatatctattaaaagcatattaattcaatttggacagcttgctttagtggcgtgttcactttttgttgagtgtgaggtcatgtgttcaagacc 498  Q
    |||||||||||||||||||||||| |||| || |||||| | | ||||||| ||||||||    || |||||||||||||||||||||||||||||||||    
T  38098455 atggttatatatctattaaaagcaaattattttaatttgtatatcttgcttcagtggcgttcctacattttgttgagtgtgaggtcatgtgttcaagacc 38098356  T
Q  499 caccaaagtgtg 510  Q
    ||||||||||||    
T  38098355 caccaaagtgtg 38098344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 81; E-Value: 8e-38
Query Start/End: Original strand, 379 - 510
Target Start/End: Original strand, 44073833 - 44073965
Alignment:
Q  379 atatgtaagctacaaaaataatggttatatatctattaaaagcatattaattcaatttggacagcttgctttagtggcgtgttcac-tttttgttgagtg 477  Q
    |||||||||  || |||||||| |||||||||||||||||||||  ||| ||||||||||||| ||||||| |||||| || |||| |||||||||||||    
T  44073833 atatgtaagacacgaaaataatagttatatatctattaaaagcaatttatttcaatttggacaccttgcttgagtggcatggtcacttttttgttgagtg 44073932  T
Q  478 tgaggtcatgtgttcaagacccaccaaagtgtg 510  Q
    |||||||||||||||||||||||||||||||||    
T  44073933 tgaggtcatgtgttcaagacccaccaaagtgtg 44073965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 298 - 490
Target Start/End: Complemental strand, 7118337 - 7118146
Alignment:
Q  298 cagggccggcccatagtccgtcgaggctgggcgacgacaccaggcctccaattttttggggtccaaaatattannnnnnnnatatgtaagctacaaaaat 397  Q
    ||||||||||| |||| || |||||| |||||||||||||| | ||| |||||||||||| | |||||||| |        |||||||||  || |||||    
T  7118337 cagggccggcctatagcccatcgaggttgggcgacgacaccggaccttcaattttttgggattcaaaatat-attttttttatatgtaagacacgaaaat 7118239  T
Q  398 aatggttatatatctattaaaagcatattaattcaatttggacagcttgctttagtggcgtgttcactttttgttgagtgtgaggtcatgtgt 490  Q
    ||| ||||||||||||||||||||| |||| ||||||||| ||| |||||||||||||| || ||||||||| |||||||| |||||||||||    
T  7118238 aatagttatatatctattaaaagcaaattatttcaatttgtacaacttgctttagtggcatggtcactttttattgagtgtcaggtcatgtgt 7118146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 379 - 510
Target Start/End: Complemental strand, 7835200 - 7835071
Alignment:
Q  379 atatgtaagctacaaaaataatggttatatatctattaaaagcatattaattcaatttggacagcttgctttagtggcgtgttcactttttgttgagtgt 478  Q
    |||||||||| || |||||||||||||||||||||||||||||| ||||||| |||||| |||||||| ||||||||||||  | ||||||| |||  ||    
T  7835200 atatgtaagccacgaaaataatggttatatatctattaaaagcaaattaatttaatttgtacagcttgttttagtggcgtggccgctttttgatga--gt 7835103  T
Q  479 gaggtcatgtgttcaagacccaccaaagtgtg 510  Q
    ||||||||||||||||||||||| ||||||||    
T  7835102 gaggtcatgtgttcaagacccacaaaagtgtg 7835071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 298 - 510
Target Start/End: Complemental strand, 23980116 - 23979903
Alignment:
Q  298 cagggccggcccatagtccgtcgaggctgggcgacgacaccaggcctccaattttttggggtccaaaatattannnnnnnnatatgtaagctacaaaaat 397  Q
    |||| ||||||||||| |||||||||||||||||||| ||| |||||||||||||||||||||||||||||          |||||||||  || |||||    
T  23980116 caggaccggcccatagcccgtcgaggctgggcgacgataccgggcctccaattttttggggtccaaaatat--atttttttatatgtaagacacgaaaat 23980019  T
Q  398 aatggttatatatctattaaaagcatattaatt---caatttggacagcttgctttagtggcgtgttcactttttgttgagtgtgaggtcatgtgttcaa 494  Q
    ||||||||||||| ||||||||||| |||| ||    | | |  ||| |||| ||||||||| ||  |||||||||||||||||||| ||||||||||||    
T  23980018 aatggttatatatttattaaaagcaaattattttagtagtctatacaccttgttttagtggcatggccactttttgttgagtgtgagatcatgtgttcaa 23979919  T
Q  495 gacccaccaaagtgtg 510  Q
    ||| || |||||||||    
T  23979918 gactcaacaaagtgtg 23979903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 298 - 483
Target Start/End: Complemental strand, 29172429 - 29172246
Alignment:
Q  298 cagggccggcccatagtccgtcgaggctgggcgacgacaccaggcctccaattttttggggtccaaaatattannnnnnnnatatgtaagctacaaaaat 397  Q
    |||||||||||||||| ||||||| ||||||||| |||||| |||||||||||||||||  || ||||||| |        |||||||||  || |||||    
T  29172429 cagggccggcccatag-ccgtcgaagctgggcgatgacaccgggcctccaattttttggaatctaaaatat-atattttttatatgtaagacacgaaaat 29172332  T
Q  398 aatggttatatatctattaaaagcatattaattcaatttggacagcttgctttagtggcgtgttcactttttgttgagtgtgaggt 483  Q
    |||| |||||||||||||||||||| |||| || |||||| ||| |||||||||||||||||  || |||||||||||||||||||    
T  29172331 aatgattatatatctattaaaagcaaattattttaatttgtacaacttgctttagtggcgtggccattttttgttgagtgtgaggt 29172246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 298 - 363
Target Start/End: Complemental strand, 7835301 - 7835236
Alignment:
Q  298 cagggccggcccatagtccgtcgaggctgggcgacgacaccaggcctccaattttttggggtccaa 363  Q
    |||||||||||||||| ||||| |||||||||||||||||| | ||||||||||||||||| ||||    
T  7835301 cagggccggcccatagcccgtcaaggctgggcgacgacaccggacctccaattttttggggcccaa 7835236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 298 - 358
Target Start/End: Complemental strand, 47262869 - 47262809
Alignment:
Q  298 cagggccggcccatagtccgtcgaggctgggcgacgacaccaggcctccaattttttgggg 358  Q
    |||||||||||||||| |||||| ||||||||||||||||  |||||| ||||||| ||||    
T  47262869 cagggccggcccatagcccgtcggggctgggcgacgacactgggcctcaaatttttggggg 47262809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 298 - 353
Target Start/End: Complemental strand, 35407180 - 35407125
Alignment:
Q  298 cagggccggcccatagtccgtcgaggctgggcgacgacaccaggcctccaattttt 353  Q
    |||||||| ||||||| |||||| ||||||||||||||||  |||||| |||||||    
T  35407180 cagggccgacccatagcccgtcggggctgggcgacgacactgggcctcaaattttt 35407125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 134; Significance: 2e-69; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 134; E-Value: 2e-69
Query Start/End: Original strand, 297 - 510
Target Start/End: Original strand, 14206576 - 14206788
Alignment:
Q  297 ccagggccggcccatagtccgtcgaggctgggcgacgacaccaggcctccaattttttggggtccaaaatattannnnnnnnatatgtaagctacaaaaa 396  Q
    ||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||| ||||||||||         |||||||||| || ||||    
T  14206576 ccagggccggcccatagcccgtcgaggctgggcgacgacaccgggcctccaattttttggggcccaaaatatt-ttttttttatatgtaagccacgaaaa 14206674  T
Q  397 taatggttatatatctattaaaagcatattaattcaatttggacagcttgctttagtggcgtgttcactttttgttgagtgtgaggtcatgtgttcaaga 496  Q
    |||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||| ||  |||||||||||||||||||||||||||||||||||    
T  14206675 taatggttatatatctattaaaagcaaattaattcaatttgtacagcttgctttagtggcatggccactttttgttgagtgtgaggtcatgtgttcaaga 14206774  T
Q  497 cccaccaaagtgtg 510  Q
      ||||||||||||    
T  14206775 ttcaccaaagtgtg 14206788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 126; E-Value: 1e-64
Query Start/End: Original strand, 298 - 507
Target Start/End: Complemental strand, 23219617 - 23219409
Alignment:
Q  298 cagggccggcccatagtccgtcgaggctgggcgacgacaccaggcctccaattttttggggtccaaaatattannnnnnnnatatgtaagctacaaaaat 397  Q
    |||||||||||||||| || ||||||||||||||||||||| |||||||||||||||||||  |||||||| |        |||||||||  || |||||    
T  23219617 cagggccggcccatagcccttcgaggctgggcgacgacaccgggcctccaattttttggggcacaaaatat-attttttttatatgtaagacacgaaaat 23219519  T
Q  398 aatggttatatatctattaaaagcatattaattcaatttggacagcttgctttagtggcgtgttcactttttgttgagtgtgaggtcatgtgttcaagac 497  Q
    ||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||| |||  ||||||||||||||||||||||||||||||||||||    
T  23219518 aatggttatatatctattaaaagcaaattaattcaatttgtacagcttgctttagtggtgtggccactttttgttgagtgtgaggtcatgtgttcaagac 23219419  T
Q  498 ccaccaaagt 507  Q
    ||||||||||    
T  23219418 ccaccaaagt 23219409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 95; E-Value: 4e-46
Query Start/End: Original strand, 298 - 496
Target Start/End: Complemental strand, 4486821 - 4486624
Alignment:
Q  298 cagggccggcccatagtccgtcgaggctgggcgacgacaccaggcctccaattttttggggtccaaaatattannnnnnnnatatgtaagctacaaaaat 397  Q
    |||||||||||||||| ||||||||| |||||||||||||| ||||||||||||||||||||||||||| ||         |||||||||  || |||||    
T  4486821 cagggccggcccatagcccgtcgaggttgggcgacgacaccgggcctccaattttttggggtccaaaatttt-ttttttttatatgtaagacacgaaaat 4486723  T
Q  398 aatggttatatatctattaaaagcatattaattcaatttggacagcttgctttagtggcgtgttcactttttgttgagtgtgaggtcatgtgttcaaga 496  Q
    |||||||||||||||||||||||||  || |||||||||| || | ||||||||| ||| ||  |||||||||||||||||||| ||||||||||||||    
T  4486722 aatggttatatatctattaaaagcaagtttattcaatttgtaccgtttgctttagaggcatggccactttttgttgagtgtgagatcatgtgttcaaga 4486624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 294 - 509
Target Start/End: Original strand, 31715338 - 31715551
Alignment:
Q  294 taaccagggccggcccatagtccgtcgaggctgggcgacgacaccaggcctccaattttttggggtccaaaatattannnnnnnnatatgtaagctacaa 393  Q
    ||||||||| |||||||||| |||||||||||||||||||||||| ||||||||||||||||||| ||||||||||         |||||||||  || |    
T  31715338 taaccagggtcggcccatagcccgtcgaggctgggcgacgacaccgggcctccaattttttggggcccaaaatatt--tttttttatatgtaagacacga 31715435  T
Q  394 aaataatggttatatatctattaaaagcatattaattcaatttggacagcttgctttagtggcgtgttcactttttgttgagtgtgaggtcatgtgttca 493  Q
    |||||||| |||||||||||| |||||||    | |||| |||| ||| ||||||  |||||||||  | ||||||||||||||||||||||||||||||    
T  31715436 aaataatgtttatatatctatcaaaagcaatccatttcagtttgtacaacttgctacagtggcgtggcccctttttgttgagtgtgaggtcatgtgttca 31715535  T
Q  494 agacccaccaaagtgt 509  Q
    || || ||||||||||    
T  31715536 aggcctaccaaagtgt 31715551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 298 - 358
Target Start/End: Complemental strand, 34527124 - 34527064
Alignment:
Q  298 cagggccggcccatagtccgtcgaggctgggcgacgacaccaggcctccaattttttgggg 358  Q
    |||||||||||||||| |||||| ||||||||||||||||  |||||| ||||||| ||||    
T  34527124 cagggccggcccatagcccgtcggggctgggcgacgacactgggcctcaaatttttggggg 34527064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 133; Significance: 7e-69; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 133; E-Value: 7e-69
Query Start/End: Original strand, 298 - 507
Target Start/End: Original strand, 9411949 - 9412157
Alignment:
Q  298 cagggccggcccatagtccgtcgaggctgggcgacgacaccaggcctccaattttttggggtccaaaatattannnnnnnnatatgtaagctacaaaaat 397  Q
    |||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||| |||||||||||        ||||||||| ||| |||||    
T  9411949 cagggccggcccatagcccgtcgaggctgggcgacgacaccgggcctccaattttttggggcccaaaatattattttttt-atatgtaagatacgaaaat 9412047  T
Q  398 aatggttatatatctattaaaagcatattaattcaatttggacagcttgctttagtggcgtgttcactttttgttgagtgtgaggtcatgtgttcaagac 497  Q
    ||||||||||||||||||||||||| |||| ||||||||| ||||||||||||||||||  | ||||||||| |||||||||||||||||||||||||||    
T  9412048 aatggttatatatctattaaaagcaaattatttcaatttgtacagcttgctttagtggcaagatcactttttattgagtgtgaggtcatgtgttcaagac 9412147  T
Q  498 ccaccaaagt 507  Q
    ||||||||||    
T  9412148 ccaccaaagt 9412157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 129; E-Value: 2e-66
Query Start/End: Original strand, 298 - 510
Target Start/End: Original strand, 13832674 - 13832885
Alignment:
Q  298 cagggccggcccatagtccgtcgaggctgggcgacgacaccaggcctccaattttttggggtccaaaatattannnnnnnnatatgtaagctacaaaaat 397  Q
    |||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||| ||||||||||         |||||||||  ||||||||    
T  13832674 cagggccggcccatagcccgtcgaggctgggcgacgacaccgggcctccaattttttggggcccaaaatatt-ttttttttatatgtaagacacaaaaat 13832772  T
Q  398 aatggttatatatctattaaaagcatattaattcaatttggacagcttgctttagtggcgtgttcactttttgttgagtgtgaggtcatgtgttcaagac 497  Q
    |||| |||||||||||||||||||| ||| |||||||||| ||||||||||||||||| |||  || |||||||||||||||||||||||||||||||||    
T  13832773 aatgattatatatctattaaaagcaaatttattcaatttgtacagcttgctttagtggtgtgaccattttttgttgagtgtgaggtcatgtgttcaagac 13832872  T
Q  498 ccaccaaagtgtg 510  Q
    |||||||||||||    
T  13832873 ccaccaaagtgtg 13832885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 127; E-Value: 3e-65
Query Start/End: Original strand, 300 - 510
Target Start/End: Complemental strand, 37350709 - 37350500
Alignment:
Q  300 gggccggcccatagtccgtcgaggctgggcgacgacaccaggcctccaattttttggggtccaaaatattannnnnnnnatatgtaagctacaaaaataa 399  Q
    |||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||| ||||||||||         |||||||||  ||||||||||    
T  37350709 gggccggcccatagcccgtcgaggctgggcgacgacaccgggcctccaattttttggggcccaaaatatt-ttttttttatatgtaagacacaaaaataa 37350611  T
Q  400 tggttatatatctattaaaagcatattaattcaatttggacagcttgctttagtggcgtgttcactttttgttgagtgtgaggtcatgtgttcaagaccc 499  Q
    || |||||||||||||||||||| ||| |||||||||| ||||||||||||||||| |||  || |||||||||||||||||||||||||||||||||||    
T  37350610 tgattatatatctattaaaagcaaatttattcaatttgtacagcttgctttagtggtgtgaccattttttgttgagtgtgaggtcatgtgttcaagaccc 37350511  T
Q  500 accaaagtgtg 510  Q
    |||||||||||    
T  37350510 accaaagtgtg 37350500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 125; E-Value: 4e-64
Query Start/End: Original strand, 298 - 510
Target Start/End: Original strand, 31924481 - 31924690
Alignment:
Q  298 cagggccggcccatagtccgtcgaggctgggcgacgacaccaggcctccaattttttggggtccaaaatattannnnnnnnatatgtaagctacaaaaat 397  Q
    |||||||||||||||| |||||||||||||||||||||||| | |||| ||||||||||| |||||||| ||         |||||||||| || |||||    
T  31924481 cagggccggcccatagcccgtcgaggctgggcgacgacaccggacctctaattttttgggatccaaaatttt---ttttttatatgtaagccacgaaaat 31924577  T
Q  398 aatggttatatatctattaaaagcatattaattcaatttggacagcttgctttagtggcgtgttcactttttgttgagtgtgaggtcatgtgttcaagac 497  Q
    ||||||||||||||||||||||||| || ||||||||||| |||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||    
T  31924578 aatggttatatatctattaaaagcaaatcaattcaatttgtacagcttgctttagtggcgtggccactttttgttgagtgtgaggtcatgtgttcaagac 31924677  T
Q  498 ccaccaaagtgtg 510  Q
     ||||||||||||    
T  31924678 tcaccaaagtgtg 31924690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 110; E-Value: 4e-55
Query Start/End: Original strand, 298 - 510
Target Start/End: Complemental strand, 42434738 - 42434528
Alignment:
Q  298 cagggccggcccatagtccgtcgaggctgggcgacgacaccaggcctccaattttttggggtccaaaatattannnnnnnnatatgtaagctacaaaaat 397  Q
    |||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||| ||||  | ||         |||||||||| || |||||    
T  42434738 cagggccggcccatagcccgtcgaggctgggcgacgacaccgggcctccaattttttggggcccaa--tttttttttttttatatgtaagccacgaaaat 42434641  T
Q  398 aatggttatatatctattaaaagcatattaattcaatttggacagcttgctttagtggcgtgttcactttttgttgagtgtgaggtcatgtgttcaagac 497  Q
    |||||||||||||||||||||| || |||||||||||||| | || |||||||||||| |||  ||||||||| ||||||||||||||||||||||||||    
T  42434640 aatggttatatatctattaaaaacaaattaattcaatttgtatagattgctttagtggtgtggccactttttgatgagtgtgaggtcatgtgttcaagac 42434541  T
Q  498 ccaccaaagtgtg 510  Q
    |||| ||||||||    
T  42434540 ccacaaaagtgtg 42434528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 108; E-Value: 6e-54
Query Start/End: Original strand, 315 - 510
Target Start/End: Original strand, 40535513 - 40535706
Alignment:
Q  315 ccgtcgaggctgggcgacgacaccaggcctccaattttttggggtccaaaatattannnnnnnnatatgtaagctacaaaaataatggttatatatctat 414  Q
    |||||||||||||||||||||||| |||||| |||||||||||| || |||||||         |||||||||| || ||||||||||||||||||||||    
T  40535513 ccgtcgaggctgggcgacgacaccgggcctctaattttttggggcccgaaatatt--tttttttatatgtaagccacgaaaataatggttatatatctat 40535610  T
Q  415 taaaagcatattaattcaatttggacagcttgctttagtggcgtgttcactttttgttgagtgtgaggtcatgtgttcaagacccaccaaagtgtg 510  Q
    |||||||| ||||||| |||||| ||||||||||||||||| |||   ||||||||||||||||||||||||||||||||||||||||| ||||||    
T  40535611 taaaagcaaattaattaaatttgtacagcttgctttagtggtgtgacaactttttgttgagtgtgaggtcatgtgttcaagacccaccatagtgtg 40535706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 101; E-Value: 9e-50
Query Start/End: Original strand, 297 - 510
Target Start/End: Original strand, 29824189 - 29824406
Alignment:
Q  297 ccagggccggcccatagtccgtcgaggctgggcgacgacaccaggcctccaattttttggggtccaaaatattannnnnnnn----atatgtaagctaca 392  Q
    |||||||||||||||||  ||||||||||||||||||||||| ||||||||||||||||||| ||||  | ||             |||||||||| ||     
T  29824189 ccagggccggcccatagctcgtcgaggctgggcgacgacaccgggcctccaattttttggggcccaatttttttttttttttttttatatgtaagccacg 29824288  T
Q  393 aaaataatggttatatatctattaaaagcatattaattcaatttggacagcttgctttagtggcgtgttcactttttgttgagtgtgaggtcatgtgttc 492  Q
    |||||||||||||||||||||||||||||  |||||||||||||| ||||||||||||||||| |||  ||||||||| |||||||||||||||||||||    
T  29824289 aaaataatggttatatatctattaaaagcgaattaattcaatttgtacagcttgctttagtggtgtggccactttttgatgagtgtgaggtcatgtgttc 29824388  T
Q  493 aagacccaccaaagtgtg 510  Q
    ||||||||| || |||||    
T  29824389 aagacccacaaatgtgtg 29824406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 93; E-Value: 6e-45
Query Start/End: Original strand, 298 - 510
Target Start/End: Complemental strand, 40977212 - 40977003
Alignment:
Q  298 cagggccggcccatagtccgtcgaggctgggcgacgacaccaggcctccaattttttggggtccaaaatattannnnnnnnatatgtaagctacaaaaat 397  Q
    |||||||||||||||| ||||||||| |||||||||||||| | ||||||||||||||||| ||||| | ||         |||||||||| || |||||    
T  40977212 cagggccggcccatagcccgtcgaggttgggcgacgacaccggacctccaattttttggggcccaaattttt---ttttttatatgtaagccacgaaaat 40977116  T
Q  398 aatggttatatatctattaaaagcatattaattcaatttggacagcttgctttagtggcgtgttcactttttgttgagtgtgaggtcatgtgttcaagac 497  Q
    ||| ||||||||||||||||||| | ||||||| |||||| | ||||||||||||||| |||  |||||||||  |||||||||||||| ||||||||||    
T  40977115 aatagttatatatctattaaaagaaaattaatttaatttgtatagcttgctttagtggtgtggccactttttgaggagtgtgaggtcatatgttcaagac 40977016  T
Q  498 ccaccaaagtgtg 510  Q
    |||| ||||||||    
T  40977015 ccacaaaagtgtg 40977003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 298 - 493
Target Start/End: Complemental strand, 7351507 - 7351310
Alignment:
Q  298 cagggccggcccatagtccgtcgaggctgggcgacgacaccaggcctccaattttttggggtccaaaatat-tannnnnnnna-tatgtaagctacaaaa 395  Q
    |||||||||||||||| |||||||||||||||||||||||| | ||||||||||||||||| ||||||||| ||        | ||||||||  || |||    
T  7351507 cagggccggcccatagcccgtcgaggctgggcgacgacaccggacctccaattttttggggcccaaaatatatatattttttaatatgtaagacacgaaa 7351408  T
Q  396 ataatggttatatatctattaaaagcatattaattcaatttggacagcttgctttagtggcgtgttcactttttgttgagtgtgaggtcatgtgttca 493  Q
    |||||| |||||||||||||||||||| ||| ||| ||| || |||||||||||||||||| ||  || |||||||||||||||||||||||||||||    
T  7351407 ataatgattatatatctattaaaagcaaatttatttaatctgtacagcttgctttagtggcatggccattttttgttgagtgtgaggtcatgtgttca 7351310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 298 - 358
Target Start/End: Original strand, 40535443 - 40535503
Alignment:
Q  298 cagggccggcccatagtccgtcgaggctgggcgacgacaccaggcctccaattttttgggg 358  Q
    |||||||||||||||| |||||||||||||||||||||||| |||||| ||||||||||||    
T  40535443 cagggccggcccatagcccgtcgaggctgggcgacgacaccgggcctctaattttttgggg 40535503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 298 - 367
Target Start/End: Original strand, 1791652 - 1791721
Alignment:
Q  298 cagggccggcccatagtccgtcgaggctgggcgacgacaccaggcctccaattttttggggtccaaaata 367  Q
    ||||| |||||||||||||||||| ||||||| | |||||| |||||| | ||||| |||||||||||||    
T  1791652 cagggacggcccatagtccgtcgaagctgggctatgacaccgggcctcaattttttgggggtccaaaata 1791721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 298 - 370
Target Start/End: Original strand, 27286056 - 27286128
Alignment:
Q  298 cagggccggcccatagtccgtcgaggctgggcgacgacaccaggcctccaattttttggggtccaaaatatta 370  Q
    |||||||| |||||||||| |||||||||||| | |||||| |||||| |||||||| ||| | |||||||||    
T  27286056 cagggccgacccatagtccttcgaggctgggctatgacaccgggcctcaaattttttagggcctaaaatatta 27286128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 130; Significance: 5e-67; HSPs: 20)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 130; E-Value: 5e-67
Query Start/End: Original strand, 297 - 510
Target Start/End: Original strand, 45906054 - 45906265
Alignment:
Q  297 ccagggccggcccatagtccgtcgaggctgggcgacgacaccaggcctccaattttttggggtccaaaatattannnnnnnnatatgtaagctacaaaaa 396  Q
    ||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||         |||||||||  || ||||    
T  45906054 ccagggccggcccatagcccgtcgaggctgggcgacgacaccgggcctccaattttttggggtccaaaatatt--tatttttatatgtaagacacgaaaa 45906151  T
Q  397 taatggttatatatctattaaaagcatattaattcaatttggacagcttgctttagtggcgtgttcactttttgttgagtgtgaggtcatgtgttcaaga 496  Q
    ||||| |||||||||||||||||||| ||| ||||||| || ||||||||||||||||| ||| ||| ||||||||||||||||||||||||||||||||    
T  45906152 taatgattatatatctattaaaagcaaatttattcaatctgtacagcttgctttagtggtgtgatcattttttgttgagtgtgaggtcatgtgttcaaga 45906251  T
Q  497 cccaccaaagtgtg 510  Q
    ||||||||||||||    
T  45906252 cccaccaaagtgtg 45906265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 123; E-Value: 7e-63
Query Start/End: Original strand, 292 - 510
Target Start/End: Complemental strand, 10696015 - 10695799
Alignment:
Q  292 cataaccagggccggcccatagtccgtcgaggctgggcgacgacaccaggcctccaattttttggggtccaaaatattannnnnnnnatatgtaagctac 391  Q
    |||| ||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||| ||||||||||         |||||||||  ||    
T  10696015 catacccagggccggcccatagcccgtcgaggctgggcgacgacaccgggcctccaattttttggggcccaaaatatt-tttttttaatatgtaagacac 10695917  T
Q  392 aaaaataatggttatatatctattaaaagcatattaattcaatttggacagcttgctttagtggcgtgttcactttttgttgagtgtgaggtcatgtgtt 491  Q
     ||||||||| |||||||||||||||||||  ||||||| ||||||  ||||||||||||||||||||  ||||||||||||||||||||||||||||||    
T  10695916 gaaaataatgattatatatctattaaaagcgaattaatttaatttgt-cagcttgctttagtggcgtggccactttttgttgagtgtgaggtcatgtgtt 10695818  T
Q  492 caagacccaccaaagtgtg 510  Q
    |||||||||||||||||||    
T  10695817 caagacccaccaaagtgtg 10695799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 121; E-Value: 1e-61
Query Start/End: Original strand, 298 - 510
Target Start/End: Original strand, 39625353 - 39625563
Alignment:
Q  298 cagggccggcccatagtccgtcgaggctgggcgacgacaccaggcctccaattttttggggtccaaaatattannnnnnnnatatgtaagctacaaaaat 397  Q
    |||||||||||||||| |||||||||||||||||||||||| ||||| ||||||||||||| ||||||||||         |||||||||  || |||||    
T  39625353 cagggccggcccatagcccgtcgaggctgggcgacgacaccgggccttcaattttttggggcccaaaatatt--tttttttatatgtaagacacgaaaat 39625450  T
Q  398 aatggttatatatctattaaaagcatattaattcaatttggacagcttgctttagtggcgtgttcactttttgttgagtgtgaggtcatgtgttcaagac 497  Q
    |||| |||||||||||||||||||| ||| |||||||||| | |||||||||||||||| ||  ||||||||||||||||||||||||||||||||||||    
T  39625451 aatgattatatatctattaaaagcaaatttattcaatttgtatagcttgctttagtggcatgaccactttttgttgagtgtgaggtcatgtgttcaagac 39625550  T
Q  498 ccaccaaagtgtg 510  Q
    |||||||||||||    
T  39625551 ccaccaaagtgtg 39625563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 111; E-Value: 1e-55
Query Start/End: Original strand, 297 - 510
Target Start/End: Complemental strand, 14242971 - 14242755
Alignment:
Q  297 ccagggccggcccatagtccgtcgaggctgggcgacgacaccaggcctccaattttttggggtccaaaatattannnnnnnn---atatgtaagctacaa 393  Q
    ||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||| ||||  ||||            |||||||||| || |    
T  14242971 ccagggccggcccatagcccgtcgaggctgggcgacgacaccgggcctccaattttttggggcccaatttattttatttttttttatatgtaagccacga 14242872  T
Q  394 aaataatggttatatatctattaaaagcatattaattcaatttggacagcttgctttagtggcgtgttcactttttgttgagtgtgaggtcatgtgttca 493  Q
    ||||||||||||||||||||||||||||| ||||||||||| || ||||||||||||||| | |||  ||||||||| ||||||||||||||||||||||    
T  14242871 aaataatggttatatatctattaaaagcaaattaattcaatctgtacagcttgctttagtcgtgtggccactttttgatgagtgtgaggtcatgtgttca 14242772  T
Q  494 agacccaccaaagtgtg 510  Q
    |||||||| ||||||||    
T  14242771 agacccacaaaagtgtg 14242755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 110; E-Value: 4e-55
Query Start/End: Original strand, 298 - 510
Target Start/End: Original strand, 10475820 - 10476037
Alignment:
Q  298 cagggccggcccatagtccgtcgaggctgggcgacgacaccaggcctccaattttttggggtccaaaatat-----tannnnnnnnatatgtaagctaca 392  Q
    |||||||| ||||||| | |||||||||||||||||||| | ||||||||||||||||||| |||||||||     ||        |||||||||| ||     
T  10475820 cagggccgacccatagccggtcgaggctgggcgacgacatcgggcctccaattttttggggcccaaaatatatatatattttttttatatgtaagccacg 10475919  T
Q  393 aaaataatggttatatatctattaaaagcatattaattcaatttggacagcttgctttagtggcgtgttcactttttgttgagtgtgaggtcatgtgttc 492  Q
    |||||||||||||||||||||||||||||| || ||||||||||| | |||||||||||||||| ||  |||||||| ||||||||||||||||||||||    
T  10475920 aaaataatggttatatatctattaaaagcaaatcaattcaatttgtatagcttgctttagtggcatggccactttttattgagtgtgaggtcatgtgttc 10476019  T
Q  493 aagacccaccaaagtgtg 510  Q
    ||||||||||||||||||    
T  10476020 aagacccaccaaagtgtg 10476037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 110; E-Value: 4e-55
Query Start/End: Original strand, 298 - 510
Target Start/End: Original strand, 43171575 - 43171785
Alignment:
Q  298 cagggccggcccatagtccgtcgaggctgggcgacgacaccaggcctccaattttttggggtccaaaatattannnnnnnnatatgtaagctacaaaaat 397  Q
    |||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||| ||||  | ||         |||||||||| || |||||    
T  43171575 cagggccggcccatagcccgtcgaggctgggcgacgacaccgggcctccaattttttggggcccaa--tttttatttttttatatgtaagccacgaaaat 43171672  T
Q  398 aatggttatatatctattaaaagcatattaattcaatttggacagcttgctttagtggcgtgttcactttttgttgagtgtgaggtcatgtgttcaagac 497  Q
    ||| |||||||||||||||||| || ||||||| |||||| ||||||||||||||||| |||  ||||||||| ||||||||||||||||||||||||||    
T  43171673 aatagttatatatctattaaaaacaaattaatttaatttgtacagcttgctttagtggtgtggccactttttgatgagtgtgaggtcatgtgttcaagac 43171772  T
Q  498 ccaccaaagtgtg 510  Q
    |||| ||||||||    
T  43171773 ccacaaaagtgtg 43171785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 109; E-Value: 2e-54
Query Start/End: Original strand, 297 - 510
Target Start/End: Complemental strand, 38572987 - 38572764
Alignment:
Q  297 ccagggccggcccatagtccgtcgaggctgggcgacgacaccaggcctccaattttttggggtccaaaat----------attannnnnnnnatatgtaa 386  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||  |          |||         ||||||||    
T  38572987 ccagggccggcccatagcccgtcgaggctgggcgacgacaccaggcctccaattttttggggcccaatttttttatttttatttttatttttatatgtaa 38572888  T
Q  387 gctacaaaaataatggttatatatctattaaaagcatattaattcaatttggacagcttgctttagtggcgtgttcactttttgttgagtgtgaggtcat 486  Q
    || || |||||||||||||||||||||||||||||| ||||||||||| || ||||||||||||||||||||  |||||||||| |||||||||||||||    
T  38572887 gccacgaaaataatggttatatatctattaaaagcaaattaattcaatctgtacagcttgctttagtggcgtagtcactttttgatgagtgtgaggtcat 38572788  T
Q  487 gtgttcaagacccaccaaagtgtg 510  Q
    ||||||||||||||| ||||||||    
T  38572787 gtgttcaagacccacaaaagtgtg 38572764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 109; E-Value: 2e-54
Query Start/End: Original strand, 298 - 510
Target Start/End: Original strand, 53175752 - 53175959
Alignment:
Q  298 cagggccggcccatagtccgtcgaggctgggcgacgacaccaggcctccaattttttggggtccaaaatattannnnnnnnatatgtaagctacaaaaat 397  Q
    ||||||||||||||||  ||||||||||||||||||||||| ||||||||||||||||||| ||||| | ||         |||||||||| || |||||    
T  53175752 cagggccggcccatagctcgtcgaggctgggcgacgacaccgggcctccaattttttggggcccaaattttt-----ttttatatgtaagccacgaaaat 53175846  T
Q  398 aatggttatatatctattaaaagcatattaattcaatttggacagcttgctttagtggcgtgttcactttttgttgagtgtgaggtcatgtgttcaagac 497  Q
    ||||||||||||||||||||||||| |||| ||||||||| ||||||| ||||||||| |||  ||||||||| ||||||||||||||||||||||||||    
T  53175847 aatggttatatatctattaaaagcaaattagttcaatttgtacagcttactttagtggtgtggccactttttgatgagtgtgaggtcatgtgttcaagac 53175946  T
Q  498 ccaccaaagtgtg 510  Q
    |||| || |||||    
T  53175947 ccacaaatgtgtg 53175959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 296 - 507
Target Start/End: Complemental strand, 4971174 - 4970959
Alignment:
Q  296 accagggccggcccatagtccgtcgaggctgggcgacgacaccaggcctccaattttttggggtccaaaatattannnnnnnn----atatgtaagctac 391  Q
    |||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||| ||  | ||             |||||||||| ||    
T  4971174 accagggccggcccatagcccgtcgaggctgggcgacgacaccgggcctccaattttttggggtcaaatttttttttttttttttttatatgtaagccac 4971075  T
Q  392 aaaaataatggttatatatctattaaaagcatattaattcaatttggacagcttgctttagtggcgtgttcactttttgttgagtgtgaggtcatgtgtt 491  Q
     |||||||||||||||||||||||||||||| |||||||||||||| | |||||||||||||||| || | |||||||| ||||||||||||||||||||    
T  4971074 gaaaataatggttatatatctattaaaagcaaattaattcaatttgtatagcttgctttagtggcatggttactttttgatgagtgtgaggtcatgtgtt 4970975  T
Q  492 caagacccaccaaagt 507  Q
    |||||||||| |||||    
T  4970974 caagacccacaaaagt 4970959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 106; E-Value: 1e-52
Query Start/End: Original strand, 298 - 507
Target Start/End: Complemental strand, 50517265 - 50517057
Alignment:
Q  298 cagggccggcccatagtccgtcgaggctgggcgacgacaccaggcctccaattttttggggtccaaaatattannnnnnnnatatgtaagctacaaaaat 397  Q
    |||||||||||||||| |||||||||||||||||||||||| ||| ||||||||||||||||||||||||||         ||||||||| ||| |||||    
T  50517265 cagggccggcccatagcccgtcgaggctgggcgacgacaccgggcttccaattttttggggtccaaaatatt-ttttttttatatgtaagatacgaaaat 50517167  T
Q  398 aatggttatatatctattaaaagcatattaattcaatttggacagcttgctttagtggcgtgttcactttttgttgagtgtgaggtcatgtgttcaagac 497  Q
    |||| |||||||||||||||||||| | | |||||||||  ||| |||||||||||||| ||     |||||||||||||||||||||||||||||||||    
T  50517166 aatgattatatatctattaaaagcaaagttattcaatttatacaacttgctttagtggcatggctgttttttgttgagtgtgaggtcatgtgttcaagac 50517067  T
Q  498 ccaccaaagt 507  Q
    ||||||||||    
T  50517066 ccaccaaagt 50517057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 106; E-Value: 1e-52
Query Start/End: Original strand, 298 - 510
Target Start/End: Complemental strand, 52722656 - 52722447
Alignment:
Q  298 cagggccggcccatagtccgtcgaggctgggcgacgacaccaggcctccaattttttggggtccaaaatattannnnnnnnatatgtaagctacaaaaat 397  Q
    |||||||||||||||| | |||||||||||||||||||||| || |||||||||||||||  || |||| ||         |||||||||| || |||||    
T  52722656 cagggccggcccatagccggtcgaggctgggcgacgacaccgggtctccaattttttggg--cccaaatttt-tttttttaatatgtaagccacgaaaat 52722560  T
Q  398 aatggttatatatctattaaaagcatattaattcaatttggacagcttgctttagtggcgtgttcactttttgttgagtgtgaggtcatgtgttcaagac 497  Q
    ||||||||||||||||||||||||| ||||||| |||||| |||||||||||||||||| ||  ||||||||||||||||||| ||||||||||||||||    
T  52722559 aatggttatatatctattaaaagcaaattaatttaatttgtacagcttgctttagtggcatgaccactttttgttgagtgtgaagtcatgtgttcaagac 52722460  T
Q  498 ccaccaaagtgtg 510  Q
    |||| ||||||||    
T  52722459 ccacaaaagtgtg 52722447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 298 - 510
Target Start/End: Complemental strand, 8034585 - 8034372
Alignment:
Q  298 cagggccggcccatagtccgtcgaggctgggcgacgacaccaggcctccaattttttggggtccaaaatattannnnnnnn-atatgtaagctacaaaaa 396  Q
    |||||||||||||||| |||||||||||||||||||||||| |||||| |||||||||||| ||||  | ||          |||||||||| || ||||    
T  8034585 cagggccggcccatagcccgtcgaggctgggcgacgacaccgggcctctaattttttggggcccaatttttttttattttttatatgtaagccacgaaaa 8034486  T
Q  397 taatggttatatatctattaaaagcatattaattcaatttggacagcttgctttagtggcgtgttcactttttgttgagtgtgaggtcatgtgttcaaga 496  Q
    |||||||||||||||||||||||||  ||||||||||| || |||||||||||||||||||||  | ||||||| |||||||||||||||||||| ||||    
T  8034485 taatggttatatatctattaaaagcgaattaattcaatctgtacagcttgctttagtggcgtggccgctttttgatgagtgtgaggtcatgtgtttaaga 8034386  T
Q  497 cccaccaaagtgtg 510  Q
    ||||| ||||||||    
T  8034385 cccacaaaagtgtg 8034372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 298 - 501
Target Start/End: Original strand, 24596240 - 24596454
Alignment:
Q  298 cagggccggcccatagtccgtcgaggctgggcgacgacaccaggcctccaattttttggggtccaaaa-----------tattannnnnnnnatatgtaa 386  Q
    |||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||| ||||||           |||          ||||||||    
T  24596240 cagggccggcccatagcccgtcgaggctgggcgacgacaccgggcctccaattttttggggcccaaaaaaaaatatatatatatatatatttatatgtaa 24596339  T
Q  387 gctacaaaaataatggttatatatctattaaaagcatattaattcaatttggacagcttgctttagtggcgtgttcactttttgttgagtgtgaggtcat 486  Q
    |  || |||||||||||||||||||||||||||||| ||||||| |||||| ||||||||||||||||| |||  |||||||||||||||||||||||||    
T  24596340 gacacgaaaataatggttatatatctattaaaagcaaattaatttaatttgtacagcttgctttagtggtgtggccactttttgttgagtgtgaggtcat 24596439  T
Q  487 gtgttcaagacccac 501  Q
    |||||||||||||||    
T  24596440 gtgttcaagacccac 24596454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 299 - 507
Target Start/End: Original strand, 52553326 - 52553530
Alignment:
Q  299 agggccggcccatagtccgtcgaggctgggcgacgacaccaggcctccaattttttggggtccaaaatattannnnnnnnatatgtaagctacaaaaata 398  Q
    ||||||||||||||| |||||||||||||||||||||| | || |||||||||||||||| ||||| | ||         |||||||||  || ||||||    
T  52553326 agggccggcccatagcccgtcgaggctgggcgacgacatcgggtctccaattttttggggcccaaattttt---ttttttatatgtaagtcacgaaaata 52553422  T
Q  399 atggttatatatctattaaaagcatattaattcaatttggacagcttgctttagtggcgtgttcactttttgttgagtgtgaggtcatgtgttcaagacc 498  Q
    |||||||||||||||||||||||| |||||||||||||| ||||||||||||||| |  ||  ||||||||| |||||||||||||||||||||||||||    
T  52553423 atggttatatatctattaaaagcaaattaattcaatttgtacagcttgctttagt-gaatgaccactttttgatgagtgtgaggtcatgtgttcaagacc 52553521  T
Q  499 caccaaagt 507  Q
    ||| |||||    
T  52553522 cacaaaagt 52553530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 96; E-Value: 9e-47
Query Start/End: Original strand, 298 - 510
Target Start/End: Original strand, 40690495 - 40690713
Alignment:
Q  298 cagggccggcccatagtccgtcgaggctgggcgacgacaccaggcctccaattttttggggtccaaaatattannnnnnnn------atatgtaagctac 391  Q
    |||||||||||||||| |||||||||||||||||||||||| | ||||||||||||||||| ||||  | ||               |||||||||| ||    
T  40690495 cagggccggcccatagcccgtcgaggctgggcgacgacaccggacctccaattttttggggcccaatttttttttttttttttttttatatgtaagccac 40690594  T
Q  392 aaaaataatggttatatatctattaaaagcatattaattcaatttggacagcttgctttagtggcgtgttcactttttgttgagtgtgaggtcatgtgtt 491  Q
     |||||||||||||||||||||||||||||| |||||||||||||| ||||||| |||| ||||||||  ||||||||| ||||||||||||||||||||    
T  40690595 gaaaataatggttatatatctattaaaagcaaattaattcaatttgtacagcttacttttgtggcgtggccactttttgatgagtgtgaggtcatgtgtt 40690694  T
Q  492 caagacccaccaaagtgtg 510  Q
    ||||||| || ||||||||    
T  40690695 caagacctacaaaagtgtg 40690713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 91; E-Value: 9e-44
Query Start/End: Original strand, 298 - 510
Target Start/End: Complemental strand, 38834656 - 38834452
Alignment:
Q  298 cagggccggcccatagtccgtcgaggctgggcgacgacaccaggcctccaattttttggggtccaaaatattannnnnnnnatatgtaagctacaaaaat 397  Q
    |||||||||||||||| |||||||||||||||||||||||| ||| | |||| |||||||| ||||||||| |        |||||||||  |  |||||    
T  38834656 cagggccggcccatagcccgtcgaggctgggcgacgacaccgggctttcaatattttggggcccaaaatat-attttttttatatgtaagacatgaaaat 38834558  T
Q  398 aatggttatatatctattaaaagcatattaattcaatttggacagcttgctttagtggcgtgttcactttttgttgagtgtgaggtcatgtgttcaagac 497  Q
    ||||||||||||       |||||| |||  |||||||||||||||||||||||||||| ||  ||||||||||||||||||||||||||||||||||||    
T  38834557 aatggttatata-------aaagcaaattttttcaatttggacagcttgctttagtggcatggccactttttgttgagtgtgaggtcatgtgttcaagac 38834465  T
Q  498 ccaccaaagtgtg 510  Q
    |||||||||||||    
T  38834464 ccaccaaagtgtg 38834452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 379 - 510
Target Start/End: Original strand, 26406941 - 26407072
Alignment:
Q  379 atatgtaagctacaaaaataatggttatatatctattaaaagcatattaattcaatttggacagcttgctttagtggcgtgttcactttttgttgagtgt 478  Q
    |||||||||| || ||||||||||||||||||||||||||||||  ||| ||||||||| ||||||||||||||||||||   ||||||||| ||| |||    
T  26406941 atatgtaagccacgaaaataatggttatatatctattaaaagcaacttagttcaatttgtacagcttgctttagtggcgtagccactttttgatgaatgt 26407040  T
Q  479 gaggtcatgtgttcaagacccaccaaagtgtg 510  Q
     |||||||||||||||||||||| ||||||||    
T  26407041 aaggtcatgtgttcaagacccacaaaagtgtg 26407072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 298 - 510
Target Start/End: Complemental strand, 24657131 - 24656921
Alignment:
Q  298 cagggccggcccatagtccgtcgaggctgggcgacgacaccaggcctccaattttttggggtccaaaatattannnnnnnnatatgtaagctacaaaaat 397  Q
    ||||||| |||||||| |||| || | ||||||||||||||  |||||||||||||||||| ||||  | ||         |||||||||  || |||||    
T  24657131 cagggccagcccatagcccgttgaagttgggcgacgacaccgtgcctccaattttttggggcccaa--tttttttttttttatatgtaagacacgaaaat 24657034  T
Q  398 aatggttatatatctattaaaagcatattaattcaatttggacagcttgctttagtggcgtgttcactttttgttgagtgtgaggtcatgtgttcaagac 497  Q
    ||||||||||||||||||||||||||| || ||  | ||  ||||||| ||| ||||  |||  |||||||||||||||||||||||||||||||| |||    
T  24657033 aatggttatatatctattaaaagcatactattttgaattttacagcttacttcagtgttgtggccactttttgttgagtgtgaggtcatgtgttcatgac 24656934  T
Q  498 ccaccaaagtgtg 510  Q
    |||||||||||||    
T  24656933 ccaccaaagtgtg 24656921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 379 - 510
Target Start/End: Complemental strand, 54245095 - 54244968
Alignment:
Q  379 atatgtaagctacaaaaataatggttatatatctattaaaagcatattaattcaatttggacagcttgctttagtggcgtgttcactttttgttgagtgt 478  Q
    |||||||||  || ||||||||| |||||||||||||||||||  ||| ||||||| || | ||||||||||||||||||| ||| ||||||||||||||    
T  54245095 atatgtaagacacgaaaataatgattatatatctattaaaagcgaatttattcaatctgtatagcttgctttagtggcgtggtcattttttgttgagtgt 54244996  T
Q  479 gaggtcatgtgttcaagacccaccaaagtgtg 510  Q
    ||||||||||||    ||||||||||||||||    
T  54244995 gaggtcatgtgt----gacccaccaaagtgtg 54244968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 298 - 358
Target Start/End: Complemental strand, 17332145 - 17332085
Alignment:
Q  298 cagggccggcccatagtccgtcgaggctgggcgacgacaccaggcctccaattttttgggg 358  Q
    |||||||||||||||| |||||| ||||||||||| ||||  |||||| ||||||| ||||    
T  17332145 cagggccggcccatagcccgtcggggctgggcgaccacactgggcctcaaatttttggggg 17332085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 125; Significance: 4e-64; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 125; E-Value: 4e-64
Query Start/End: Original strand, 298 - 510
Target Start/End: Original strand, 28714299 - 28714510
Alignment:
Q  298 cagggccggcccatagtccgtcgaggctgggcgacgacaccaggcctccaattttttggggtccaaaatattannnnnnnnatatgtaagctacaaaaat 397  Q
    |||||||||||||||| ||||||||| |||||||||||||| ||||||||||||||||||||||||||||||         ||||||||| |||||||||    
T  28714299 cagggccggcccatagcccgtcgaggttgggcgacgacaccgggcctccaattttttggggtccaaaatatt-ttttttttatatgtaagatacaaaaat 28714397  T
Q  398 aatggttatatatctattaaaagcatattaattcaatttggacagcttgctttagtggcgtgttcactttttgttgagtgtgaggtcatgtgttcaagac 497  Q
    |||| ||||||||||||||||| |  ||| |||||||||| |||||||||||||||||||||  |||| ||||||||||||||||||||||||||||||     
T  28714398 aatgattatatatctattaaaaacgaatttattcaatttgtacagcttgctttagtggcgtggccactatttgttgagtgtgaggtcatgtgttcaagat 28714497  T
Q  498 ccaccaaagtgtg 510  Q
    |||||||||||||    
T  28714498 ccaccaaagtgtg 28714510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 125; E-Value: 4e-64
Query Start/End: Original strand, 298 - 510
Target Start/End: Original strand, 46580289 - 46580499
Alignment:
Q  298 cagggccggcccatagtccgtcgaggctgggcgacgacaccaggcctccaattttttggggtccaaaatattannnnnnnnatatgtaagctacaaaaat 397  Q
    |||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||| | ||||||||         |||||||||  ||||||||    
T  46580289 cagggccggcccatagcccgtcgaggctgggcgacgacaccgggcctccaattttttggggcctaaaatatt--tttttttatatgtaagacacaaaaat 46580386  T
Q  398 aatggttatatatctattaaaagcatattaattcaatttggacagcttgctttagtggcgtgttcactttttgttgagtgtgaggtcatgtgttcaagac 497  Q
    |||| |||||||||||||||||||| ||| |||||||||| ||||||||||||||||| |||  || |||||||||||||||||||||||||||||||||    
T  46580387 aatgattatatatctattaaaagcaaatttattcaatttgtacagcttgctttagtggtgtgaccattttttgttgagtgtgaggtcatgtgttcaagac 46580486  T
Q  498 ccaccaaagtgtg 510  Q
    |||||||||||||    
T  46580487 ccaccaaagtgtg 46580499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 125; E-Value: 4e-64
Query Start/End: Original strand, 298 - 510
Target Start/End: Complemental strand, 53228178 - 53227967
Alignment:
Q  298 cagggccggcccatagtccgtcgaggctgggcgacgacaccaggcctccaattttttggggtccaaaatattannnnnnnnatatgtaagctacaaaaat 397  Q
    ||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||| ||||||||||         |||||||||  || |||||    
T  53228178 cagggccggcccatagtccgtcgaggctgggcgacgacaccggacctccaattttttggggcccaaaatatt-ttttttttatatgtaagacacgaaaat 53228080  T
Q  398 aatggttatatatctattaaaagcatattaattcaatttggacagcttgctttagtggcgtgttcactttttgttgagtgtgaggtcatgtgttcaagac 497  Q
    |||| |||||||||||||||||||  ||| |||||||||| |||||||||||||||||||||  || |||||||||||||||||||||||||||||||||    
T  53228079 aatgattatatatctattaaaagcgaatttattcaatttgtacagcttgctttagtggcgtgaccattttttgttgagtgtgaggtcatgtgttcaagac 53227980  T
Q  498 ccaccaaagtgtg 510  Q
    |||||||||||||    
T  53227979 ccaccaaagtgtg 53227967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 113; E-Value: 6e-57
Query Start/End: Original strand, 298 - 510
Target Start/End: Complemental strand, 13229833 - 13229622
Alignment:
Q  298 cagggccggcccatagtccgtcgaggctgggcgacgacaccaggcctccaattttttggggtccaaaatattannnnnnnnatatgtaagctacaaaaat 397  Q
    |||||||||||||||| ||||||||||| ||||||| |||| ||||||||||||||||||||||||| | ||         |||||||||  || |||||    
T  13229833 cagggccggcccatagcccgtcgaggctaggcgacggcaccgggcctccaattttttggggtccaaattttt-ttttttttatatgtaagtcacgaaaat 13229735  T
Q  398 aatggttatatatctattaaaagcatattaattcaatttggacagcttgctttagtggcgtgttcactttttgttgagtgtgaggtcatgtgttcaagac 497  Q
    ||||||||||||||||||||||||| ||||||| |||||| |||||||||||||||||| ||  || |||||||||||||||||||||||||||||||||    
T  13229734 aatggttatatatctattaaaagcaaattaattaaatttgtacagcttgctttagtggcatggccattttttgttgagtgtgaggtcatgtgttcaagac 13229635  T
Q  498 ccaccaaagtgtg 510  Q
    || ||||||||||    
T  13229634 cctccaaagtgtg 13229622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 113; E-Value: 6e-57
Query Start/End: Original strand, 298 - 510
Target Start/End: Original strand, 26619163 - 26619374
Alignment:
Q  298 cagggccggcccatagtccgtcgaggctgggcgacgacaccaggcctccaattttttggggtccaaaatattannnnnnnnatatgtaagctacaaaaat 397  Q
    |||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||| ||||||||| |        |||||||||  || |||||    
T  26619163 cagggccggcccatagcccgtcgaggctgggcgacgacaccgggcctccaattttttggggcccaaaatat-attttttttatatgtaagacacgaaaat 26619261  T
Q  398 aatggttatatatctattaaaagcatattaattcaatttggacagcttgctttagtggcgtgttcactttttgttgagtgtgaggtcatgtgttcaagac 497  Q
    |||||||||||||||||||||| || | || ||||||||| ||| |||||||||||||| |||| | ||| | |||||||||||||||||||||||||||    
T  26619262 aatggttatatatctattaaaatcaaaatatttcaatttgtacaacttgctttagtggcatgtttattttctattgagtgtgaggtcatgtgttcaagac 26619361  T
Q  498 ccaccaaagtgtg 510  Q
    |||||||||||||    
T  26619362 ccaccaaagtgtg 26619374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 112; E-Value: 3e-56
Query Start/End: Original strand, 298 - 509
Target Start/End: Complemental strand, 40219219 - 40219008
Alignment:
Q  298 cagggccggcccatagtccgtcgaggctgggcgacgacaccaggcctccaattttttggggtccaaaatattannnnnnnnatatgtaagctacaaaaat 397  Q
    |||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||         ||||||||| ||| |||||    
T  40219219 cagggccggcccatagcccgtcgaggctgggcgacgacaccgggcctccaattttttggggtccaaaatattttttttttaatatgtaagatacgaaaat 40219120  T
Q  398 aatggttatatatctattaaaagcatattaattcaatttggacagcttgctttagtggcgtgttcactttttgttgagtgtgaggtcatgtgttcaagac 497  Q
    |||| |||||||||||||||||| | ||| ||| ||| || |||||||||||||||||| ||  || |||||||||| |||| |||||||||||| ||||    
T  40219119 aatgattatatatctattaaaagtaaatttatttaatctgtacagcttgctttagtggcatggccaatttttgttgaatgtgtggtcatgtgttctagac 40219020  T
Q  498 ccaccaaagtgt 509  Q
    ||||||||||||    
T  40219019 ccaccaaagtgt 40219008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 109; E-Value: 2e-54
Query Start/End: Original strand, 298 - 505
Target Start/End: Complemental strand, 43100605 - 43100395
Alignment:
Q  298 cagggccggcccatagtccgtcgaggctgggcgacgacaccaggcctccaattttttggggtccaaa---atattannnnnnnnatatgtaagctacaaa 394  Q
    |||||||||||||||| | |||||||||||||||||||||| ||||||||||||||||||| |||||   || |          |||||||||  || ||    
T  43100605 cagggccggcccatagcctgtcgaggctgggcgacgacaccgggcctccaattttttggggcccaaatttatttatttatttttatatgtaagacacgaa 43100506  T
Q  395 aataatggttatatatctattaaaagcatattaattcaatttggacagcttgctttagtggcgtgttcactttttgttgagtgtgaggtcatgtgttcaa 494  Q
    |||||||||||||||||||||||||||| |||| ||||||||| |||||||||||||||||| || |||||||||||||||||||| |||||||||||||    
T  43100505 aataatggttatatatctattaaaagcaaattatttcaatttgtacagcttgctttagtggcatggtcactttttgttgagtgtgaagtcatgtgttcaa 43100406  T
Q  495 gacccaccaaa 505  Q
    |||||||||||    
T  43100405 gacccaccaaa 43100395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 105; E-Value: 4e-52
Query Start/End: Original strand, 298 - 510
Target Start/End: Original strand, 21629415 - 21629625
Alignment:
Q  298 cagggccggcccatagtccgtcgaggctgggcgacgacaccaggcctccaattttttggggtccaaaatattannnnnnnnatatgtaagctacaaaaat 397  Q
    |||||||||||||||| ||||||||| |||||||||||||| ||||||||||||||||||  ||||||||| |        |||||||||  || |||||    
T  21629415 cagggccggcccatagcccgtcgaggttgggcgacgacaccgggcctccaattttttgggc-ccaaaatat-attttttttatatgtaagacacgaaaat 21629512  T
Q  398 aatggttatatatctattaaaagcatattaattcaatttggacagcttgctttagtggcgtgttcactttttgttgagtgtgaggtcatgtgttcaagac 497  Q
    ||| |||||||||||||||||||||  ||| ||||||||| ||| |||||||||||||| || |||||||||||||||||||| |||||||||||||||     
T  21629513 aattgttatatatctattaaaagcaatttatttcaatttgtacaacttgctttagtggcatggtcactttttgttgagtgtgaagtcatgtgttcaagat 21629612  T
Q  498 ccaccaaagtgtg 510  Q
    |||||||||||||    
T  21629613 ccaccaaagtgtg 21629625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 298 - 510
Target Start/End: Complemental strand, 48833102 - 48832883
Alignment:
Q  298 cagggccggcccatagtccgtcgaggctgggcgacgacaccaggcctccaattttttggggtccaaaa-------tattannnnnnnnatatgtaagcta 390  Q
    |||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||        |||          |||||||||| |    
T  48833102 cagggccggcccataggccgtcgaggctgggcgacgacaccgggcctccaattttttggggtccaaatatttttttatatttttttttatatgtaagcca 48833003  T
Q  391 caaaaataatggttatatatctattaaaagcatattaattcaatttggacagcttgctttagtggcgtgttcactttttgttgagtgtgaggtcatgtgt 490  Q
    | |||||||||||||||||||||||||||||  ||||||||||| || |||| ||||||||||||||||  ||||||||| ||||||||| |||||||||    
T  48833002 cgaaaataatggttatatatctattaaaagcgaattaattcaatctgtacagtttgctttagtggcgtggccactttttgatgagtgtgatgtcatgtgt 48832903  T
Q  491 tcaagacccaccaaagtgtg 510  Q
    ||||||||||| ||||||||    
T  48832902 tcaagacccacaaaagtgtg 48832883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 101; E-Value: 9e-50
Query Start/End: Original strand, 297 - 509
Target Start/End: Complemental strand, 1121523 - 1121314
Alignment:
Q  297 ccagggccggcccatagtccgtcgaggctgggcgacgacaccaggcctccaattttttggggtccaaaatattannnnnnnnatatgtaagctacaaaaa 396  Q
    ||||||||||||||||| ||||||||| |||||||||||||| ||||||||||||||||||| ||||| | ||         |||||||||| || ||||    
T  1121523 ccagggccggcccatagcccgtcgaggatgggcgacgacaccgggcctccaattttttggggcccaaattttt--tttttttatatgtaagccacgaaaa 1121426  T
Q  397 taatggttatatatctattaaaagcatattaattcaatttggacagcttgctttagtggcgtgttcactttttgttgagtgtgaggtcatgtgttcaaga 496  Q
    | |||||||||||||||||||||||| ||||||||||| || ||||||||||||||||| ||| ||| |||||||||||| |||||||||||||||||||    
T  1121425 tgatggttatatatctattaaaagcaaattaattcaatctgtacagcttgctttagtggtgtggtca-tttttgttgagtatgaggtcatgtgttcaaga 1121327  T
Q  497 cccaccaaagtgt 509  Q
     |||  |||||||    
T  1121326 tccattaaagtgt 1121314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 296 - 510
Target Start/End: Complemental strand, 576084 - 575876
Alignment:
Q  296 accagggccggcccatagtccgtcgaggctgggcgacgacaccaggcctccaattttttggggtccaaaatattannnnnnnnatatgtaagctacaaaa 395  Q
    ||||||||| |||||||| |||||||||||||||||||||||| |||||||| |||||||||  ||||  | ||         |||||||||| || |||    
T  576084 accagggccagcccatagcccgtcgaggctgggcgacgacaccgggcctccagttttttgggc-ccaaggtttt-----ttttatatgtaagccacgaaa 575991  T
Q  396 ataatggttatatatctattaaaagcatattaattcaatttggacagcttgctttagtggcgtgttcactttttgttgagtgtgaggtcatgtgttcaag 495  Q
    |||||||||||||| |||||||||||  |||||||||||||| | ||||||||||||||| |||  ||||||||||||||||||||||||||||||||||    
T  575990 ataatggttatataactattaaaagcgaattaattcaatttgtatagcttgctttagtggtgtggccactttttgttgagtgtgaggtcatgtgttcaag 575891  T
Q  496 acccaccaaagtgtg 510  Q
    | |||||||||||||    
T  575890 atccaccaaagtgtg 575876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 298 - 509
Target Start/End: Original strand, 6890966 - 6891179
Alignment:
Q  298 cagggccggcccatagtccgtcgaggctgggcgacgacaccaggcctccaattttttggggtccaaaatattannnnnnnn--atatgtaagctacaaaa 395  Q
    ||||| |||||||||||||||||||| |||||||||||||| | ||||||||||||||||| ||||| | |||          |||||||||| || |||    
T  6890966 cagggtcggcccatagtccgtcgaggttgggcgacgacaccggacctccaattttttggggcccaaatttttattttttttttatatgtaagccacgaaa 6891065  T
Q  396 ataatggttatatatctattaaaagcatattaattcaatttggacagcttgctttagtggcgtgttcactttttgttgagtgtgaggtcatgtgttcaag 495  Q
    |||||||||||||||| |||||||| | ||||||| |||||| |||| ||||||||||||||||  || |||||| ||||||||||||||||||||||||    
T  6891066 ataatggttatatatcaattaaaagaaaattaatttaatttgtacagtttgctttagtggcgtggccattttttgatgagtgtgaggtcatgtgttcaag 6891165  T
Q  496 acccaccaaagtgt 509  Q
    |||||| |||||||    
T  6891166 acccacaaaagtgt 6891179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 299 - 510
Target Start/End: Complemental strand, 1124359 - 1124150
Alignment:
Q  299 agggccggcccatagtccgtcgaggctgggcgacgacaccaggcctccaattttttggggtccaaaatattannnnnnnnatatgtaagctacaaaaata 398  Q
    ||||||||| ||||| |||||||||||  |||| || |||  ||||||||||||| |||||||||| | ||         |||||||||| || ||||||    
T  1124359 agggccggctcatagcccgtcgaggctaagcgatgataccgagcctccaatttttaggggtccaaattttt--ttattttatatgtaagccacgaaaata 1124262  T
Q  399 atggttatatatctattaaaagcatattaattcaatttggacagcttgctttagtggcgtgttcactttttgttgagtgtgaggtcatgtgttcaagacc 498  Q
    |||||||||||||||||||||| | |||||||||||||| ||||||||||||||||| |||  || |||||||||||||||||| ||||||||||||||     
T  1124261 atggttatatatctattaaaagaaaattaattcaatttgtacagcttgctttagtggtgtggccattttttgttgagtgtgaggccatgtgttcaagact 1124162  T
Q  499 caccaaagtgtg 510  Q
    ||||||||||||    
T  1124161 caccaaagtgtg 1124150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 298 - 510
Target Start/End: Original strand, 50435831 - 50436030
Alignment:
Q  298 cagggccggcccatagtccgtcgaggctgggcgacgacaccaggcctccaattttttggggtccaaaatattannnnnnnnatatgtaagctacaaaaat 397  Q
    |||||||||||||||| |||||||||||||||||||||||| |||||||||||||||             ||         |||||||||| || |||||    
T  50435831 cagggccggcccatagcccgtcgaggctgggcgacgacaccgggcctccaatttttt-------------tttttttttttatatgtaagccacgaaaat 50435917  T
Q  398 aatggttatatatctattaaaagcatattaattcaatttggacagcttgctttagtggcgtgttcactttttgttgagtgtgaggtcatgtgttcaagac 497  Q
    ||||||||||||||||||||||| | ||||||| ||| || |||||||||||||||||| || |||||||||| ||||||||||||||||||||||||||    
T  50435918 aatggttatatatctattaaaagtaaattaatttaatctgtacagcttgctttagtggcatggtcactttttgatgagtgtgaggtcatgtgttcaagac 50436017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 300 - 510
Target Start/End: Original strand, 56038081 - 56038289
Alignment:
Q  300 gggccggcccatagtccgtcgaggctgggcgacgacaccaggcctccaattttttggggtccaaaatattannnnnnnnatatgtaagctacaaaaataa 399  Q
    |||||||||||||| ||||||||||||| |||||||||| | |||||||||||||||||| |||| | ||         ||||||||| ||| |||||||    
T  56038081 gggccggcccatagcccgtcgaggctggacgacgacaccggacctccaattttttggggttcaaattttt--ttttttaatatgtaagatacgaaaataa 56038178  T
Q  400 tggttatatatctattaaaagcatattaattcaatttggacagcttgctttagtggcgtgttcactttttgttgagtgtgaggtcatgtgttcaagaccc 499  Q
    || |||||||||||||||||| |  || ||||||| || | |||||||||||||| ||||  || |||||||||||||||||||||||||||| | ||||    
T  56038179 tgattatatatctattaaaagtaagtttattcaatctgtatagcttgctttagtgacgtggccattttttgttgagtgtgaggtcatgtgttctaaaccc 56038278  T
Q  500 accaaagtgtg 510  Q
    |||||||||||    
T  56038279 accaaagtgtg 56038289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 298 - 470
Target Start/End: Original strand, 32129153 - 32129324
Alignment:
Q  298 cagggccggcccatagtccgtcgaggctgggcgacgacaccaggcctccaattttttggggtccaaaatattannnnnnnnatatgtaagctacaaaaat 397  Q
    |||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||| |||||| ||        ||||||||   |   ||||    
T  32129153 cagggccggcccatagcccgtcgaggctgggcgacgacaccgggcctccaattttttggggtctaaaata-tattttttttatatgtaaaacatgtaaat 32129251  T
Q  398 aatggttatatatctattaaaagcatattaattcaatttggacagcttgctttagtggcgtgttcactttttg 470  Q
    ||||||||||||||||||||||||| |||  ||||||||| |||||||  ||||||||||||  |||||||||    
T  32129252 aatggttatatatctattaaaagcaaattttttcaatttgtacagcttattttagtggcgtggccactttttg 32129324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 125; Significance: 4e-64; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 125; E-Value: 4e-64
Query Start/End: Original strand, 298 - 510
Target Start/End: Original strand, 4391665 - 4391876
Alignment:
Q  298 cagggccggcccatagtccgtcgaggctgggcgacgacaccaggcctccaattttttggggtccaaaatattannnnnnnnatatgtaagctacaaaaat 397  Q
    |||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||| | ||||||||         |||||||||  ||||||||    
T  4391665 cagggccggcccatagcccgtcgaggctgggcgacgacaccgggcctccaattttttggggcctaaaatatt-ttttttttatatgtaagacacaaaaat 4391763  T
Q  398 aatggttatatatctattaaaagcatattaattcaatttggacagcttgctttagtggcgtgttcactttttgttgagtgtgaggtcatgtgttcaagac 497  Q
    |||| |||||||||||||||||||| ||| |||||||||| ||||||||||||||||| |||  || |||||||||||||||||||||||||||||||||    
T  4391764 aatgattatatatctattaaaagcaaatttattcaatttgtacagcttgctttagtggtgtgaccattttttgttgagtgtgaggtcatgtgttcaagac 4391863  T
Q  498 ccaccaaagtgtg 510  Q
    |||||||||||||    
T  4391864 ccaccaaagtgtg 4391876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 121; E-Value: 1e-61
Query Start/End: Original strand, 298 - 510
Target Start/End: Complemental strand, 28439985 - 28439776
Alignment:
Q  298 cagggccggcccatagtccgtcgaggctgggcgacgacaccaggcctccaattttttggggtccaaaatattannnnnnnnatatgtaagctacaaaaat 397  Q
    |||||||||||||||||||||||||| |||||||||||||| | ||||||||||||||||| | ||||||||         ||||||||||||| |||||    
T  28439985 cagggccggcccatagtccgtcgaggttgggcgacgacaccggacctccaattttttggggcctaaaatatt---ttttttatatgtaagctacgaaaat 28439889  T
Q  398 aatggttatatatctattaaaagcatattaattcaatttggacagcttgctttagtggcgtgttcactttttgttgagtgtgaggtcatgtgttcaagac 497  Q
    ||||||||||||||||||||||||| |||||||  ||||| ||||||||||||||| ||| |  |||||||||||||||||||||||||||||||||||     
T  28439888 aatggttatatatctattaaaagcaaattaattttatttgtacagcttgctttagtagcgcggccactttttgttgagtgtgaggtcatgtgttcaagat 28439789  T
Q  498 ccaccaaagtgtg 510  Q
    |||||||||||||    
T  28439788 ccaccaaagtgtg 28439776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 121; E-Value: 1e-61
Query Start/End: Original strand, 298 - 510
Target Start/End: Complemental strand, 34599773 - 34599564
Alignment:
Q  298 cagggccggcccatagtccgtcgaggctgggcgacgacaccaggcctccaattttttggggtccaaaatattannnnnnnnatatgtaagctacaaaaat 397  Q
    |||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||| ||||  | ||         |||||||||| || |||||    
T  34599773 cagggccggcccatagcccgtcgaggctgggcgacgacaccgggcctccaattttttggggcccaatttttt---tttattatatgtaagccacgaaaat 34599677  T
Q  398 aatggttatatatctattaaaagcatattaattcaatttggacagcttgctttagtggcgtgttcactttttgttgagtgtgaggtcatgtgttcaagac 497  Q
    ||||||||||||||||||||||||| |||||||||||||| |||||||| |||||||| |||  |||||||||||||||||||||| |||||||||||||    
T  34599676 aatggttatatatctattaaaagcaaattaattcaatttgtacagcttgttttagtggtgtggccactttttgttgagtgtgaggttatgtgttcaagac 34599577  T
Q  498 ccaccaaagtgtg 510  Q
    |||||||||||||    
T  34599576 ccaccaaagtgtg 34599564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 118; E-Value: 7e-60
Query Start/End: Original strand, 298 - 510
Target Start/End: Complemental strand, 45463753 - 45463540
Alignment:
Q  298 cagggccggcccatagtccgtcgaggctgggcgacgacaccaggcctccaattttttggggtccaaaata-ttannnnnnnnatatgtaagctacaaaaa 396  Q
    |||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||| |||||||| ||         |||||||||  || ||||    
T  45463753 cagggccggcccatagcccgtcgaggctgggcgacgacaccgggcctccaattttttggggcccaaaataattttttttttaatatgtaagacacgaaaa 45463654  T
Q  397 taatggttatatatctattaaaagcatattaattcaatttggacagcttgctttagtggcgtgttcactttttgttgagtgtgaggtcatgtgttcaaga 496  Q
    ||||| |||||||||||||||||||| ||| ||| |||||| |||||||||||||||||| ||  || ||||||||||||||||||||||||||||||||    
T  45463653 taatgattatatatctattaaaagcaaatttatttaatttgtacagcttgctttagtggcatggccattttttgttgagtgtgaggtcatgtgttcaaga 45463554  T
Q  497 cccaccaaagtgtg 510  Q
    ||||||||||||||    
T  45463553 cccaccaaagtgtg 45463540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 113; E-Value: 6e-57
Query Start/End: Original strand, 298 - 510
Target Start/End: Complemental strand, 5003658 - 5003447
Alignment:
Q  298 cagggccggcccatagtccgtcgaggctgggcgacgacaccaggcctccaattttttggggtccaaaatattannnnnnnnatatgtaagctacaaaaat 397  Q
    |||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||| | ||||||||         |||||||||  |  |||||    
T  5003658 cagggccggcccatagcccgtcgaggctgggcgacgacaccgggcctccaattttttggggcctaaaatatt-ttttttttatatgtaagacatgaaaat 5003560  T
Q  398 aatggttatatatctattaaaagcatattaattcaatttggacagcttgctttagtggcgtgttcactttttgttgagtgtgaggtcatgtgttcaagac 497  Q
    ||||||||||||||||||||||||| |||  || |||||| ||||||||||||||||||||   || |||||||||||||||||||||||||||||||||    
T  5003559 aatggttatatatctattaaaagcaaattttttgaatttgtacagcttgctttagtggcgtcgccattttttgttgagtgtgaggtcatgtgttcaagac 5003460  T
Q  498 ccaccaaagtgtg 510  Q
    |||||||||||||    
T  5003459 ccaccaaagtgtg 5003447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 113; E-Value: 6e-57
Query Start/End: Original strand, 298 - 510
Target Start/End: Complemental strand, 25459677 - 25459470
Alignment:
Q  298 cagggccggcccatagtccgtcgaggctgggcgacgacaccaggcctccaattttttggggtccaaaatattannnnnnnnatatgtaagctacaaaaat 397  Q
    |||||||||||||||| |||||||||||||||||||||| | ||||||||||||||||||| ||||| | ||         |||||||||| || |||||    
T  25459677 cagggccggcccatagcccgtcgaggctgggcgacgacatcgggcctccaattttttggggcccaaattttt-----ttttatatgtaagccacgaaaat 25459583  T
Q  398 aatggttatatatctattaaaagcatattaattcaatttggacagcttgctttagtggcgtgttcactttttgttgagtgtgaggtcatgtgttcaagac 497  Q
    ||||||||||||||||||||||||| ||||||||||| || | ||||||||||||||| |||  ||||||||| ||||||||||||||||||||||||||    
T  25459582 aatggttatatatctattaaaagcaaattaattcaatctgtatagcttgctttagtggtgtgaccactttttgatgagtgtgaggtcatgtgttcaagac 25459483  T
Q  498 ccaccaaagtgtg 510  Q
    |||| ||||||||    
T  25459482 ccacaaaagtgtg 25459470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 109; E-Value: 2e-54
Query Start/End: Original strand, 301 - 505
Target Start/End: Original strand, 16492421 - 16492623
Alignment:
Q  301 ggccggcccatagtccgtcgaggctgggcgacgacaccaggcctccaattttttggggtccaaaatattannnnnnnnatatgtaagctacaaaaataat 400  Q
    ||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||| ||||||||||         |||||||||  || ||||||||    
T  16492421 ggccggcccatagcccgtcgaggctgggcgacgacaccgggcctccaattttttggggcccaaaatatt--tttttttatatgtaagacacgaaaataat 16492518  T
Q  401 ggttatatatctattaaaagcatattaattcaatttggacagcttgctttagtggcgtgttcactttttgttgagtgtgaggtcatgtgttcaagaccca 500  Q
    | |||||||||||||||||||| ||| ||||||| |  ||||||||||| |||||| ||  |||||||||||||||||||||||||||||||||||||||    
T  16492519 gattatatatctattaaaagcaaatttattcaatctatacagcttgcttcagtggcatggccactttttgttgagtgtgaggtcatgtgttcaagaccca 16492618  T
Q  501 ccaaa 505  Q
    |||||    
T  16492619 ccaaa 16492623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 297 - 510
Target Start/End: Complemental strand, 15382012 - 15381805
Alignment:
Q  297 ccagggccggcccatagtccgtcgaggctgggcgacgacaccaggcctccaattttttggggtccaaaatattannnnnnnnatatgtaagctacaaaaa 396  Q
    ||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||| ||||  | ||         |||||||||| || ||||    
T  15382012 ccagggccggcccatagcccgtcgaggctgggcgacgacaccgggcctccaattttttggggcccaatttttt------tttatatgtaagccacgaaaa 15381919  T
Q  397 taatggttatatatctattaaaagcatattaattcaatttggacagcttgctttagtggcgtgttcactttttgttgagtgtgaggtcatgtgttcaaga 496  Q
    |||||||||||||| ||||||||||  ||||||| ||| || |||||||||||||||||| ||   |||||||| |||||||||||||||||||||||||    
T  15381918 taatggttatatatttattaaaagcgaattaatttaatctgtacagcttgctttagtggcatggctactttttgatgagtgtgaggtcatgtgttcaaga 15381819  T
Q  497 cccaccaaagtgtg 510  Q
    ||||| ||||||||    
T  15381818 cccacaaaagtgtg 15381805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 93; E-Value: 6e-45
Query Start/End: Original strand, 298 - 509
Target Start/End: Complemental strand, 12131579 - 12131369
Alignment:
Q  298 cagggccggcccatagtccgtcgaggctgggcgacgacaccaggcctccaattttttggggtccaaaatattannnnnnnnatatgtaagctacaaaaat 397  Q
    |||||||||||||||| |||||||||||||||||||||||| ||||||||||| ||||||| | ||||||||         ||||| |||  || |||||    
T  12131579 cagggccggcccatagcccgtcgaggctgggcgacgacaccgggcctccaattatttggggcctaaaatatt--tttttttatatgcaagacacgaaaat 12131482  T
Q  398 aatggttatatatctattaaaagcatattaattcaatttggacagcttgctttagtggcgtgttcacttttt-gttgagtgtgaggtcatgtgttcaaga 496  Q
    ||||||||||||||||||||||||| |||| ||  ||||| ||| ||||||| |||||| ||  |||||||| ||| |||||||||||||||||||||||    
T  12131481 aatggttatatatctattaaaagcaaattattttgatttgtacaccttgcttgagtggcatggccacttttttgttaagtgtgaggtcatgtgttcaaga 12131382  T
Q  497 cccaccaaagtgt 509  Q
    |||||||||||||    
T  12131381 cccaccaaagtgt 12131369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 302 - 509
Target Start/End: Original strand, 38903352 - 38903559
Alignment:
Q  302 gccggcccatagtccgtcgaggctgggcgacgacaccaggcctccaattttttggggtccaaaatattannnnnnnnatatgtaagctacaaaaataatg 401  Q
    |||||||||||| |||||||||||||||||||||||| | ||||||||| ||||||| ||||||||||         |||||||||  |  | |||| ||    
T  38903352 gccggcccatagcccgtcgaggctgggcgacgacaccggacctccaattatttggggcccaaaatatt-ttttttttatatgtaagacatgacaatagtg 38903450  T
Q  402 gttatatatctattaaaagcatattaattcaatttggacagcttgctttagtggcgtgttcac-tttttgttgagtgtgaggtcatgtgttcaagaccca 500  Q
    |||||||||||||||||||||  ||| ||   |||  ||| ||||||| |||||  |   ||| ||||||||||||||||||||| ||||||||||||||    
T  38903451 gttatatatctattaaaagcaagttatttttgtttatacaccttgcttgagtggtattgccacttttttgttgagtgtgaggtcaagtgttcaagaccca 38903550  T
Q  501 ccaaagtgt 509  Q
    |||||||||    
T  38903551 ccaaagtgt 38903559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 298 - 358
Target Start/End: Complemental strand, 38033699 - 38033639
Alignment:
Q  298 cagggccggcccatagtccgtcgaggctgggcgacgacaccaggcctccaattttttgggg 358  Q
    |||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||    
T  38033699 cagggccggcccatagcccgtcgaggctgggcgacgacaccgggcctccaattttttgggg 38033639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 379 - 422
Target Start/End: Complemental strand, 38033621 - 38033578
Alignment:
Q  379 atatgtaagctacaaaaataatggttatatatctattaaaagca 422  Q
    |||||||||| || |||||||| |||||||||||||||||||||    
T  38033621 atatgtaagccacgaaaataatagttatatatctattaaaagca 38033578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0208 (Bit Score: 97; Significance: 2e-47; HSPs: 1)
Name: scaffold0208
Description:

Target: scaffold0208; HSP #1
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 298 - 510
Target Start/End: Complemental strand, 3121 - 2910
Alignment:
Q  298 cagggccggcccatagtccgtcgaggctgggcgacgacaccaggcctccaattttttggggtccaaaatattannnnnnnnatatgtaagctacaaaaat 397  Q
    ||||||||| |||||| |||||||||||||||||||||||| |||||| || ||||||||| ||||||||||         |||||||||  || |||||    
T  3121 cagggccggtccatagcccgtcgaggctgggcgacgacaccgggcctctaaatttttggggcccaaaatatttttttttttatatgtaagacacgaaaat 3022  T
Q  398 aatggttatatatctattaaaagcatattaattcaatttggacagcttgctttagtggcgtgttcactttttgttgagtgtgaggtcatgtgttcaagac 497  Q
    |||| |||||||||||||||||||| |||||||| || |   ||| ||| ||||||||||||  ||||||||||||||||||||||||||||||||| ||    
T  3021 aatgattatatatctattaaaagcaaattaattctatctatgcagtttgttttagtggcgtggccactttttgttgagtgtgaggtcatgtgttcaa-ac 2923  T
Q  498 ccaccaaagtgtg 510  Q
    |||||||||||||    
T  2922 ccaccaaagtgtg 2910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0054 (Bit Score: 96; Significance: 9e-47; HSPs: 1)
Name: scaffold0054
Description:

Target: scaffold0054; HSP #1
Raw Score: 96; E-Value: 9e-47
Query Start/End: Original strand, 295 - 510
Target Start/End: Original strand, 30368 - 30582
Alignment:
Q  295 aaccagggccggcccatagtccgtcgaggctgggcgacgacaccaggcctccaattttttggggtccaaaatattannnnnnnnatatgtaagctacaaa 394  Q
    ||||||||||||||||||| ||||||||||||| |||||||||| | |||||||||||||||||||||||||| |         |||||||||  |  ||    
T  30368 aaccagggccggcccatagcccgtcgaggctggacgacgacaccggacctccaattttttggggtccaaaataat-ttctttttatatgtaagacatgaa 30466  T
Q  395 aataatggttatatatctattaaaagcatattaattcaatttggacagcttgctttagtggcgtgttcactttttgttgagtgtgaggtcatgtgttcaa 494  Q
    ||||||| ||||||||||||||||| || ||| ||| |||||| |||||||||||||||||| ||  || |||||||  |||||||||||||||||||||    
T  30467 aataatgattatatatctattaaaaacaaatttatttaatttgtacagcttgctttagtggcatggccattttttgtgaagtgtgaggtcatgtgttcaa 30566  T
Q  495 gacccaccaaagtgtg 510  Q
    |||||| |||||||||    
T  30567 gacccatcaaagtgtg 30582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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