View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2610_low_7 (Length: 585)
Name: NF2610_low_7
Description: NF2610
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2610_low_7 |
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Alignment Details
Target: chr5 (Bit Score: 481; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 481; E-Value: 0
Query Start/End: Original strand, 1 - 568
Target Start/End: Complemental strand, 812274 - 811714
Alignment:
| Q |
1 |
aaaaatgtttgatcaccttcaaacaataagaaagagagagtgatcgacagatttatttatttaatatgttggtaatgaccaaatcatacatttgtgcttt |
100 |
Q |
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| T |
812274 |
aaaaatgtttgatcaccttcaaacaataagaaagagagagtgatcgacatatttatttatttaatatgttggtaatgaccaaatcatacatttgtgcttt |
812175 |
T |
|
| Q |
101 |
aatgaatggcttcttatattacagtttt-aataactaactttttggcatgaaattggatcctatcctatacttgctatgaaagacaacttgaagtcctat |
199 |
Q |
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| T |
812174 |
aatgaatggcttcttatattacagtttttaataactaactttttggcatgaaattggatcctat-----acttgctatgaaagacaacttgaagtcctat |
812080 |
T |
|
| Q |
200 |
tttattttcttatacataagtgttcactcctcatcaactttgtatttctgtaaggctagtttgttatattcactataaagtagctttcactatcaacctc |
299 |
Q |
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| T |
812079 |
tttattttcttatacgtaagtgttcactcctcatcaactttgtatttct--aaggctagtttgctatattcactataaagtagctttcactatcaacctc |
811982 |
T |
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| Q |
300 |
aataaggaagactaaggaacaacaaaaactaccatctcaacagcttcaaatagacatcttaccaataaaaagcttatccttacttctttaggnnnnnnnn |
399 |
Q |
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| T |
811981 |
aataaggaagactaaggaacaacaaaaactaccatctcaacagcttcaaatagacatcttaccaataaaaagcttatccttacttctttagg-aaaaaaa |
811883 |
T |
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| Q |
400 |
caaagaatatatatataggccaatgcattcttaccccactaccctactcagattttaaaaaattatgtacaaattaatggaaagcattaaagagaggaaa |
499 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
811882 |
caaagaatctatatataggccaatgcattcttaccccactaccctactcagattttaaaaaattatgtacaaattaatggaaagcattaaagagaggaaa |
811783 |
T |
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| Q |
500 |
aatgatggacttagtggatgctttataagacacaaatttcaaaagaagacaatcattctattctaatat |
568 |
Q |
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|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
811782 |
aaagatggacttagtggatgctttataagacacaaatttcaaaagaagacaatcattctattctaatat |
811714 |
T |
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