View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2610_low_9 (Length: 544)
Name: NF2610_low_9
Description: NF2610
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2610_low_9 |
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Alignment Details
Target: chr1 (Bit Score: 471; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 471; E-Value: 0
Query Start/End: Original strand, 19 - 533
Target Start/End: Complemental strand, 52625280 - 52624767
Alignment:
| Q |
19 |
ccaaaagcttctttctcttctctttttggtaccaattccctaaccctaaaaactacttttagcttatttcaaacttataagtgcttaattaattaagatt |
118 |
Q |
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| T |
52625280 |
ccaaaagcttctttctcttctctttttggtaccaattccctaaccctaaaaactacttttagcttatgtcaaacttattagtgcttaattaattaagatt |
52625181 |
T |
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| Q |
119 |
tctgttttaaggttgtgttgccgtatctgaaatcgaagctacattcaatctacaataaagaaagggaagcaagaattcaggccactctttggggagatga |
218 |
Q |
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|||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
52625180 |
tctgttttaaggttgttttgccgtatctgaaatcgaagctgcattcaatctacaataaagaaagggaagcaagaattcaggccactatttggggagatga |
52625081 |
T |
|
| Q |
219 |
aaatgaatcatataccttcaatgctcgtgcctccgttacaacactcatcacaaaaagatttcagaaaattgtaggattatgttacccattgttgcatgct |
318 |
Q |
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| T |
52625080 |
aaatgaatcatataccttcaatgctcgtgcctccgttacaacactcatcacaaaaagatttcagaaaattgtaggattatgttacccattgttgcatgct |
52624981 |
T |
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| Q |
319 |
ggtactgaaggtatgtgtttcttttacattttatcttccttcattttgatagcacgctagttttcagataaatgtcaatccacttcattttcaagacttc |
418 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
52624980 |
ggtactgaaggtatgtgtttcttttaca-tttatcttccttcattttgatagcactctagttttcatataaatgtcaatccacttcattttcaagacttc |
52624882 |
T |
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| Q |
419 |
attgttttcttcatgtttgtatttacatgcaggcttccaattcgcataccagatgttatacctattggatgctactgggtactactcactagcgctgcac |
518 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
52624881 |
attgttttcttcatgtttgtatttacatgcaggcttccaattcgcataccagttgttatacctattggatgctactgggtactactcattagcgctgcac |
52624782 |
T |
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| Q |
519 |
gcacttgggattcat |
533 |
Q |
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||||||||||||||| |
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| T |
52624781 |
gcacttgggattcat |
52624767 |
T |
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