View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2611_high_17 (Length: 245)
Name: NF2611_high_17
Description: NF2611
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2611_high_17 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 228; Significance: 1e-126; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 6 - 245
Target Start/End: Original strand, 42272307 - 42272546
Alignment:
| Q |
6 |
caaagggataaaggcctgacgacgtgtttgattcaaatatgggtcaccatagagcctctaagtaggaaaaaagagcccaaaactatttttaacccttcca |
105 |
Q |
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| T |
42272307 |
caaagggataaaggcatgacgacgtgtttgattcaaatatgggtcaccatagagcctctaagtaggaaaaaagagcccaaaactatttttaacccttcca |
42272406 |
T |
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| Q |
106 |
tatcaattgagcggtggtccgaatgaggcgttatgtaaagcacaaccgcctaacggcctcacgtccatgtggtgactccaaccacctaatttagaagtca |
205 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||| |
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| T |
42272407 |
tatcaattgagcggtggtccgaatgaggcgttatgtaaagcacaaccgcctaacggcctcacgtccatgtggcgactccaaccacctaatctagaagtca |
42272506 |
T |
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| Q |
206 |
ttctcctataaaaaggtacaaaagttagtctttgaataac |
245 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |
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| T |
42272507 |
ttctcctataaaaaggtacaaaagttagtctttgaataac |
42272546 |
T |
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