View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2611_high_19 (Length: 238)
Name: NF2611_high_19
Description: NF2611
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2611_high_19 |
 | |
|
| [»] chr3 (2 HSPs) |
| |
|
Alignment Details
Target: chr3 (Bit Score: 184; Significance: 1e-99; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 18 - 238
Target Start/End: Complemental strand, 31085384 - 31085164
Alignment:
| Q |
18 |
cttactaaggtgatgcatgaagacctcaaaactgcagcaaaggatgtaaactattgggcaggaacaacaaccttgatgcctctaataggtggatttcttg |
117 |
Q |
| |
|
||||||||||||||||||||||| || ||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31085384 |
cttactaaggtgatgcatgaagatcttaaaactgcagcaaagaatgtaaactattggtcaggaacaacaaccttgatgcctctaataggtggatttcttg |
31085285 |
T |
|
| Q |
118 |
ctgatgcttacattggtcgatttcctatggtcctattttcttccctggtctacctcatggtaaatcttttatgtataaatattgtgcannnnnnncttaa |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
31085284 |
ctgatgcttacattggtcgatttcctatggtcctattttcttccctggtctacctcatggtaaatcttttatgtataaatattgtgcatttttttcttaa |
31085185 |
T |
|
| Q |
218 |
aaattggaaatgggagaaatt |
238 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
31085184 |
aaattggaaatgggagaaatt |
31085164 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 139; E-Value: 7e-73
Query Start/End: Original strand, 21 - 187
Target Start/End: Complemental strand, 31068084 - 31067918
Alignment:
| Q |
21 |
actaaggtgatgcatgaagacctcaaaactgcagcaaaggatgtaaactattgggcaggaacaacaaccttgatgcctctaataggtggatttcttgctg |
120 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
31068084 |
actaaggtgatgcatgaagacctcaaaactgcagcaaaggatgtaaactattggtcaggaacaacaaccttgatgcctctaattggtggatttcttgctg |
31067985 |
T |
|
| Q |
121 |
atgcttacattggtcgatttcctatggtcctattttcttccctggtctacctcatggtaaatctttt |
187 |
Q |
| |
|
||||||||| |||||||||||||||| |||||||||||||||| |||||||| ||||||||||||| |
|
|
| T |
31067984 |
atgcttacactggtcgatttcctatgatcctattttcttccctcgtctaccttttggtaaatctttt |
31067918 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University