View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2611_high_5 (Length: 438)
Name: NF2611_high_5
Description: NF2611
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2611_high_5 |
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| [»] scaffold0301 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 367; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 367; E-Value: 0
Query Start/End: Original strand, 11 - 425
Target Start/End: Original strand, 38739138 - 38739551
Alignment:
| Q |
11 |
cataggagaagaaaaggaatagaatgaagggtccttattatgatcaattagatgaagaaattccaccgtcaaaaagaaaagaaaattcccaagcggttat |
110 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
38739138 |
cataggagaagaaaaggaatagaatgaagggtccttattatgatcaattagatgaagaaattccaccgtcaaaaagataagaaaattcccaagcggttat |
38739237 |
T |
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| Q |
111 |
atttaacttttctgttatttaaaaaatttacaagtgggatgagtaggacnnnnnnnnntcacaagagtttgtaggataaaaaatttacaagtattttcgt |
210 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
38739238 |
atttaacttttctgttatttaaaaaatttacaagtgggatgagtaggacaaaaaaaa-tcacaagagtttgtaggataaaaaatttacaagtattttcgt |
38739336 |
T |
|
| Q |
211 |
tgaatttgcacgacaagtttatcgtgcgatatagcacttctctagtccaatattgtagtatacatatttagattggtgtgagagttgaatatagttacaa |
310 |
Q |
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||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
38739337 |
tgaatttgcgcgataagtttatcgtgcgatatagcacttctctagtccaatattgtagtatacatatttagattggtgtgagagctgaatatagttacaa |
38739436 |
T |
|
| Q |
311 |
aaaaggaaagttgaatataaagaggcaatacatgacaataaggaatagacagcaaaagatcaaatcgagagacaaatgtgatatatgaaaggatggttac |
410 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38739437 |
aaaaggaaagttgaatataaagaggcaatacatgacaataaggaatagacagcaaaagatcaaatcgagagacaaatgtgatatatgaaaggatggttac |
38739536 |
T |
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| Q |
411 |
tttggagtatatatt |
425 |
Q |
| |
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||||||||||||||| |
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| T |
38739537 |
tttggagtatatatt |
38739551 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 11 - 252
Target Start/End: Original strand, 38151679 - 38151918
Alignment:
| Q |
11 |
cataggagaagaaaaggaatagaatgaagggtccttattatgatcaattagatgaagaaattccaccgtcaaaaagaaaagaaaattcccaagcggttat |
110 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38151679 |
cataggagaagaaaatgaatagaatgaagggtccttattatgatcaattagatgaagaaattccaccgtcaaaaagaaaagaaaattcccaagcggttat |
38151778 |
T |
|
| Q |
111 |
atttaacttttctgttatttaaaaaatttacaagtgggatgagtaggacnnnnnnnnntcacaagagtttgtaggataaaaaatttacaagtattttcgt |
210 |
Q |
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| T |
38151779 |
a-ttaacttttctgttatttaaaaaatttacaagtgggatgagtaggac-aaaataaatcacaagagtttgtaggataaaaaatttacaagtattttcgt |
38151876 |
T |
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| Q |
211 |
tgaatttgcacgacaagtttatcgtgcgatatagcacttctc |
252 |
Q |
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||||||||| |||||||||||||||||||||||||||||||| |
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| T |
38151877 |
tgaatttgcgcgacaagtttatcgtgcgatatagcacttctc |
38151918 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 325 - 391
Target Start/End: Original strand, 38744120 - 38744186
Alignment:
| Q |
325 |
atataaagaggcaatacatgacaataaggaatagacagcaaaagatcaaatcgagagacaaatgtga |
391 |
Q |
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|||||||||||||||| | |||||||||||| ||||||||||||| |||| ||||||||||||||| |
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| T |
38744120 |
atataaagaggcaatagaggacaataaggaactgacagcaaaagataaaattgagagacaaatgtga |
38744186 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 182; Significance: 3e-98; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 182; E-Value: 3e-98
Query Start/End: Original strand, 11 - 252
Target Start/End: Original strand, 29059461 - 29059701
Alignment:
| Q |
11 |
cataggagaagaaaaggaatagaatgaagggtccttattatgatcaattagatgaagaaattccaccgtcaaaaagaaaagaaaattcccaagcggttat |
110 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
29059461 |
cataagagaagaaaaggaatagaatgaagggtccttattatgatcaattagatgaagaaattccaccgtcaaaaagaaaagaaaattctcaagcggttat |
29059560 |
T |
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| Q |
111 |
atttaacttttctgttatttaaaaaatttacaagtgggatgagtaggacnnnnnnnnntcacaagagtttgtaggataaaaaatttacaagtattttcgt |
210 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||| | ||||||||||||| |||||||||||||||| |
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| T |
29059561 |
atttaacttttctgttatttaaaaaatttacaagtgggaagagtaggac-aaaaaaaatcacaagagctcgtaggataaaaaaattacaagtattttcgt |
29059659 |
T |
|
| Q |
211 |
tgaatttgcacgacaagtttatcgtgcgatatagcacttctc |
252 |
Q |
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||||||||| |||||||||||||||||||||||||||||||| |
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| T |
29059660 |
tgaatttgcgcgacaagtttatcgtgcgatatagcacttctc |
29059701 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0301 (Bit Score: 178; Significance: 7e-96; HSPs: 1)
Name: scaffold0301
Description:
Target: scaffold0301; HSP #1
Raw Score: 178; E-Value: 7e-96
Query Start/End: Original strand, 11 - 252
Target Start/End: Original strand, 8611 - 8851
Alignment:
| Q |
11 |
cataggagaagaaaaggaatagaatgaagggtccttattatgatcaattagatgaagaaattccaccgtcaaaaagaaaagaaaattcccaagcggttat |
110 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
8611 |
cataagagaagaaaaggaatagaatgaagggtccttattatgatcaactagatgaagaaattccaccgtcaaaaagaaaagaaaattctcaagcggttat |
8710 |
T |
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| Q |
111 |
atttaacttttctgttatttaaaaaatttacaagtgggatgagtaggacnnnnnnnnntcacaagagtttgtaggataaaaaatttacaagtattttcgt |
210 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||| | |||||||||||||||||||||||||||||| |
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| T |
8711 |
atttaacttttctgttatttaaaaaatttacaagtgggaagagtaggac-aaaaaaaatcacaagagctcgtaggataaaaaatttacaagtattttcgt |
8809 |
T |
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| Q |
211 |
tgaatttgcacgacaagtttatcgtgcgatatagcacttctc |
252 |
Q |
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||||||||| |||||||||||||||||||||||||| ||||| |
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| T |
8810 |
tgaatttgcgcgacaagtttatcgtgcgatatagcatttctc |
8851 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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