View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2611_low_11 (Length: 305)

Name: NF2611_low_11
Description: NF2611
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2611_low_11
NF2611_low_11
[»] chr8 (5 HSPs)
chr8 (18-302)||(11544589-11544873)
chr8 (57-188)||(11563776-11563908)
chr8 (29-275)||(22688996-22689245)
chr8 (102-302)||(22655715-22655915)
chr8 (18-72)||(11563678-11563732)
[»] chr2 (1 HSPs)
chr2 (21-279)||(39191294-39191552)
[»] chr3 (19 HSPs)
chr3 (32-278)||(24839303-24839549)
chr3 (33-302)||(19956603-19956872)
chr3 (112-302)||(26653667-26653857)
chr3 (33-278)||(19858615-19858860)
chr3 (108-277)||(19838937-19839106)
chr3 (31-302)||(19819079-19819350)
chr3 (118-278)||(20015616-20015776)
chr3 (31-278)||(26647547-26647794)
chr3 (30-280)||(19832411-19832661)
chr3 (33-261)||(19854060-19854288)
chr3 (102-275)||(19951670-19951843)
chr3 (169-277)||(20036069-20036177)
chr3 (147-296)||(19812808-19812957)
chr3 (169-278)||(19944260-19944369)
chr3 (143-275)||(20033774-20033906)
chr3 (169-302)||(20046639-20046772)
chr3 (108-260)||(19849557-19849709)
chr3 (29-259)||(19990087-19990317)
chr3 (32-136)||(19948509-19948613)
[»] chr5 (4 HSPs)
chr5 (121-278)||(9815577-9815734)
chr5 (121-278)||(26354345-26354502)
chr5 (18-100)||(16793979-16794061)
chr5 (112-261)||(38434998-38435147)
[»] chr1 (2 HSPs)
chr1 (102-275)||(1717766-1717939)
chr1 (171-278)||(38483516-38483621)
[»] chr7 (1 HSPs)
chr7 (171-260)||(12581822-12581911)
[»] chr4 (1 HSPs)
chr4 (208-248)||(6397284-6397324)


Alignment Details
Target: chr8 (Bit Score: 249; Significance: 1e-138; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 18 - 302
Target Start/End: Complemental strand, 11544873 - 11544589
Alignment:
Q  18 acctgcacttctcttccaccacgttgcataacgtgtggtaacaccggcatcaaaaaatctagatggaatgaataaacttgcattagataagggtctgcag 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  11544873 acctgcacttctcttccaccacgttgcataacgtgtggtaacaccggcatcaaaaaatctagatggaatgaataaacttgcatcagataagggtctgcag 11544774  T
Q  118 taatttttccaagcaatggtttcattctcattgaatctaggcacacaagctggaacatcttgatccattctaaattgcatagcaactctatgtggaagat 217  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  11544773 taatttttccaagcaatggtttcattctcattgaatctaggcacacaagctggaacatcttgatccattccaaattgcatagcaactctatgtggaagat 11544674  T
Q  218 attgctcaatagaatcaaatccaactagctcggaaactctcaaggacataacaaatgagagaacattgttatccaaatccttctt 302  Q
    ||||||||||||| ||||| ||||||||||||||||||||||| ||||||||||||||||||   || |||||||||||||||||    
T  11544673 attgctcaatagactcaaaaccaactagctcggaaactctcaatgacataacaaatgagagattttttttatccaaatccttctt 11544589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 57 - 188
Target Start/End: Original strand, 11563776 - 11563908
Alignment:
Q  57 aacaccggcatcaaaaa-atctagatggaatgaataaacttgcattagataagggtctgcagtaatttttccaagcaatggtttcattctcattgaatct 155  Q
    |||||||||||||| |  ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11563776 aacaccggcatcaatatcatctagatggaatgaataaacttgcatcagataagggtctgcagtaatttttccaagcaatggtttcattctcattgaatct 11563875  T
Q  156 aggcacacaagctggaacatcttgatccattct 188  Q
    |||||||||||||||||||||||||||||||||    
T  11563876 aggcacacaagctggaacatcttgatccattct 11563908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 29 - 275
Target Start/End: Original strand, 22688996 - 22689245
Alignment:
Q  29 tcttccaccacgttgcataacgtgtggtaacaccggcatcaaaaaatctagatggaa--tga-ataaacttgcattagataagggtctgcagtaattttt 125  Q
    ||||||||||| |||||||||  ||||||||||| || |  |||||||| |||||||  | | ||||||||| || ||| || |||||||| |||||||     
T  22688996 tcttccaccactttgcataacaagtggtaacaccagccttgaaaaatctggatggaaaataatataaacttgtatcagaaaaaggtctgcaataattttc 22689095  T
Q  126 ccaagcaatggtttcattctcattgaatctaggcacacaagctggaacatcttgatccattctaaattgcatagcaactctatgtggaagatattgctca 225  Q
    |||||||||||  | | |||   |||||||||  ||| || | ||||||||||||||||||| ||| ||| |||||||||||||||| |||||||||||     
T  22689096 ccaagcaatggcattagtctttctgaatctagagacataaccaggaacatcttgatccattccaaactgcctagcaactctatgtggtagatattgctct 22689195  T
Q  226 atagaatcaaatccaactagctcggaaactctcaaggacataacaaatga 275  Q
    ||||| ||||||||||||||||| |||||||||||| | |||||||||||    
T  22689196 atagactcaaatccaactagctcagaaactctcaagcatataacaaatga 22689245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 102 - 302
Target Start/End: Original strand, 22655715 - 22655915
Alignment:
Q  102 agataagggtctgcagtaatttttccaagcaatggtttcattctcattgaatctaggcacacaagctggaacatcttgatccattctaaattgcatagca 201  Q
    ||||| |||||||||||| |||||||||||||||  || | |||||||||| ||||  ||| || | |||||||||||||| |||| ||||||||||| |    
T  22655715 agatatgggtctgcagtagtttttccaagcaatgtatttagtctcattgaacctagctacataacccggaacatcttgatcaattccaaattgcatagaa 22655814  T
Q  202 actctatgtggaagatattgctcaatagaatcaaatccaactagctcggaaactctcaaggacataacaaatgagagaacattgttatccaaatccttct 301  Q
    |||||| ||||||||||||  || ||||| ||||||||||| ||||| ||||| |||||  | | ||||||||||||||  ||  |||||||||||||||    
T  22655815 actctacgtggaagatatttttctatagactcaaatccaacaagctcagaaaccctcaaacatacaacaaatgagagaatttttgtatccaaatccttct 22655914  T
Q  302 t 302  Q
    |    
T  22655915 t 22655915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 18 - 72
Target Start/End: Original strand, 11563678 - 11563732
Alignment:
Q  18 acctgcacttctcttccaccacgttgcataacgtgtggtaacaccggcatcaaaa 72  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  11563678 acctgcacttctcttccaccatgttgcataacgtgtggtaacaccggcatcaaaa 11563732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 211; Significance: 1e-115; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 21 - 279
Target Start/End: Original strand, 39191294 - 39191552
Alignment:
Q  21 tgcacttctcttccaccacgttgcataacgtgtggtaacaccggcatcaaaaaatctagatggaatgaataaacttgcattagataagggtctgcagtaa 120  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||  | |||||||||||||||||||    
T  39191294 tgcacttctcttcaaccacgttgcataacgtgtggtaacaccggcatcaaaaaatctagatggaatgtataaacttgtttcagataagggtctgcagtaa 39191393  T
Q  121 tttttccaagcaatggtttcattctcattgaatctaggcacacaagctggaacatcttgatccattctaaattgcatagcaactctatgtggaagatatt 220  Q
    ||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  39191394 tttttccaagcaatggtttcagtctcattgaatctaggcacacaatctggaacatcttgatccattccaaattgcatagcaactctatgtggaagatatt 39191493  T
Q  221 gctcaatagaatcaaatccaactagctcggaaactctcaaggacataacaaatgagaga 279  Q
    |||||||||| ||||| ||||||||||| ||||||||||| ||||||||||||||||||    
T  39191494 gctcaatagactcaaaaccaactagctccgaaactctcaatgacataacaaatgagaga 39191552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 119; Significance: 8e-61; HSPs: 19)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 119; E-Value: 8e-61
Query Start/End: Original strand, 32 - 278
Target Start/End: Original strand, 24839303 - 24839549
Alignment:
Q  32 tccaccacgttgcataacgtgtggtaacaccggcatcaaaaaatctagatggaatgaataaacttgcattagataagggtctgcagtaatttttccaagc 131  Q
    |||||||| |||| ||||||| ||||| ||| || |||||| ||||||||||||   ||||||||| || ||||||||||||| ||||||||||||||||    
T  24839303 tccaccactttgcgtaacgtgaggtaataccagcctcaaaatatctagatggaaaatataaacttgtatcagataagggtctggagtaatttttccaagc 24839402  T
Q  132 aatggtttcattctcattgaatctaggcacacaagctggaacatcttgatccattctaaattgcatagcaactctatgtggaagatattgctcaatagaa 231  Q
    ||||| || | ||||||||| ||||| |||| || | |||||||||||||| | ||  ||||||||||||||||||||||| |||||||| || |||||     
T  24839403 aatggctttagtctcattgagtctagacacataaccaggaacatcttgatcaaatccgaattgcatagcaactctatgtggtagatattgttctatagac 24839502  T
Q  232 tcaaatccaactagctcggaaactctcaaggacataacaaatgagag 278  Q
    ||||||||||||||||| |||||||||||| | ||||||||||||||    
T  24839503 tcaaatccaactagctcagaaactctcaagaatataacaaatgagag 24839549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 33 - 302
Target Start/End: Complemental strand, 19956872 - 19956603
Alignment:
Q  33 ccaccacgttgcataacgtgtggtaacaccggcatcaaaaaatctagatggaatgaataaacttgcattagataagggtctgcagtaatttttccaagca 132  Q
    ||||||| |||||||||||||||||||| | || ||||| ||||| | |||||   | ||  ||  || | ||| |||||||||||| ||||||||||||    
T  19956872 ccaccaccttgcataacgtgtggtaacatctgcctcaaataatcttggtggaaaatacaagtttttatcatatatgggtctgcagtagtttttccaagca 19956773  T
Q  133 atggtttcattctcattgaatctaggcacacaagctggaacatcttgatccattctaaattgcatagcaactctatgtggaagatattgctcaatagaat 232  Q
    |||  || | |||||||||| ||||  ||| || | |||||||||||||| |||| |||||||||||||||||||||||||||||||||||| ||||| |    
T  19956772 atgtatttagtctcattgaacctagctacataacccggaacatcttgatcaattccaaattgcatagcaactctatgtggaagatattgctctatagact 19956673  T
Q  233 caaatccaactagctcggaaactctcaaggacataacaaatgagagaacattgttatccaaatccttctt 302  Q
    |||||||||| |||||||||||||||||| | ||||||||||||| ||  ||  ||||||||||||||||    
T  19956672 caaatccaaccagctcggaaactctcaagcatataacaaatgagataatttttgtatccaaatccttctt 19956603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 112 - 302
Target Start/End: Complemental strand, 26653857 - 26653667
Alignment:
Q  112 ctgcagtaatttttccaagcaatggtttcattctcattgaatctaggcacacaagctggaacatcttgatccattctaaattgcatagcaactctatgtg 211  Q
    |||||||| |||| ||||||||||  || | |||||||||| |||| |||| ||  |||||||||||| || |||| |||||||||||||||||||||||    
T  26653857 ctgcagtagttttcccaagcaatgtatttagtctcattgaacctagccacataacttggaacatcttggtcaattccaaattgcatagcaactctatgtg 26653758  T
Q  212 gaagatattgctcaatagaatcaaatccaactagctcggaaactctcaaggacataacaaatgagagaacattgttatccaaatccttctt 302  Q
    ||||||||||||||||||| ||||||||||||||||| | |||||||||| | |||||||||||||| |  ||  ||||||||||||||||    
T  26653757 gaagatattgctcaatagactcaaatccaactagctcagcaactctcaagcatataacaaatgagagcatgtttgtatccaaatccttctt 26653667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 33 - 278
Target Start/End: Complemental strand, 19858860 - 19858615
Alignment:
Q  33 ccaccacgttgcataacgtgtggtaacaccggcatcaaaaaatctagatggaatgaataaacttgcattagataagggtctgcagtaatttttccaagca 132  Q
    ||||||| ||||||||| |||| ||| | |||| ||||||||||||||| ||| | ||||||||| || | | ||||||||| |||||||||||||||||    
T  19858860 ccaccactttgcataacatgtgataatatcggcctcaaaaaatctagattgaaagtataaacttgtatcataaaagggtctggagtaatttttccaagca 19858761  T
Q  133 atggtttcattctcattgaatctaggcacacaagctggaacatcttgatccattctaaattgcatagcaactctatgtggaagatattgctcaatagaat 232  Q
    |||  || |   ||||||||||||| |||| || | |||||||||||||| | |  |||||||||||||||||||||||| ||||||||||| ||| | |    
T  19858760 atgacttgagattcattgaatctagacacataaccaggaacatcttgatcaaattcaaattgcatagcaactctatgtggtagatattgctctataaact 19858661  T
Q  233 caaatccaactagctcggaaactctcaaggacataacaaatgagag 278  Q
    |||| ||||||||||| |||||||||||  | |||| |||||||||    
T  19858660 caaacccaactagctcagaaactctcaaacatataataaatgagag 19858615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 108 - 277
Target Start/End: Complemental strand, 19839106 - 19838937
Alignment:
Q  108 gggtctgcagtaatttttccaagcaatggtttcattctcattgaatctaggcacacaagctggaacatcttgatccattctaaattgcatagcaactcta 207  Q
    ||||||||| || |||||||||||||||  || | || ||||||| |||| |||| || |||||||||||||||||||||  ||||||||||||||||||    
T  19839106 gggtctgcaatagtttttccaagcaatgtatttagtcacattgaacctagccacataacctggaacatcttgatccattccgaattgcatagcaactcta 19839007  T
Q  208 tgtggaagatattgctcaatagaatcaaatccaactagctcggaaactctcaaggacataacaaatgaga 277  Q
    ||||||||||||||||| ||||| ||||||||||| |||||||||||||| | | | |||||||||||||    
T  19839006 tgtggaagatattgctctatagactcaaatccaacaagctcggaaactctaaggcatataacaaatgaga 19838937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 31 - 302
Target Start/End: Complemental strand, 19819350 - 19819079
Alignment:
Q  31 ttccaccacgttgcataacgtgtggtaacaccggcatcaaaaaatctagatggaatgaataaacttgcattagataagggtctgcagtaatttttccaag 130  Q
    ||||||||| |||||||||||||||||||| | || ||||| ||||| | |||||   | ||  ||  || |||||  || |||||||| ||||||||||    
T  19819350 ttccaccaccttgcataacgtgtggtaacatctgcctcaaataatcttggtggaaaatacaagtttttatcagatattggcctgcagtagtttttccaag 19819251  T
Q  131 caatggtttcattctcattgaatctaggcacacaagctggaacatcttgatccattctaaattgcatagcaactctatgtggaagatattgctcaataga 230  Q
    |||||  || | |||||||||| |||| |||| || | |||||||||||||| |||| ||| |||||||||||||||||||||||||||||||| || ||    
T  19819250 caatgtatttagtctcattgaacctagccacataaccaggaacatcttgatcaattccaaactgcatagcaactctatgtggaagatattgctctatgga 19819151  T
Q  231 atcaaatccaactagctcggaaactctcaaggacataacaaatgagagaacattgttatccaaatccttctt 302  Q
     ||||| ||||| ||||| |||||||||||  | ||||||||||||||||  ||  ||||||||||| ||||    
T  19819150 ctcaaaaccaacaagctcagaaactctcaaacatataacaaatgagagaatttttgtatccaaatccatctt 19819079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 118 - 278
Target Start/End: Original strand, 20015616 - 20015776
Alignment:
Q  118 taatttttccaagcaatggtttcattctcattgaatctaggcacacaagctggaacatcttgatccattctaaattgcatagcaactctatgtggaagat 217  Q
    |||| |||||||||| || ||| | ||||||||||||||||||||  | ||||||||||||||||||||| |||||||||||||||||| ||||| | ||    
T  20015616 taatatttccaagcagtgattttagtctcattgaatctaggcacatcacctggaacatcttgatccattccaaattgcatagcaactctgtgtggcaaat 20015715  T
Q  218 attgctcaatagaatcaaatccaactagctcggaaactctcaaggacataacaaatgagag 278  Q
    | ||||| ||||| ||||||||||| |||||||||||||| ||| | ||||||||||||||    
T  20015716 actgctctatagagtcaaatccaacaagctcggaaactcttaagcatataacaaatgagag 20015776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 31 - 278
Target Start/End: Complemental strand, 26647794 - 26647547
Alignment:
Q  31 ttccaccacgttgcataacgtgtggtaacaccggcatcaaaaaatctagatggaatgaataaacttgcattagataagggtctgcagtaatttttccaag 130  Q
    ||||||||| |||||||||| || |||||| | || ||||||||||| ||||| |   | |||||   || ||||| | |||| ||||| ||||||||||    
T  26647794 ttccaccaccttgcataacgggtagtaacatctgcctcaaaaaatctcgatgggaaatacaaactcctatcagatatgcgtctacagtagtttttccaag 26647695  T
Q  131 caatggtttcattctcattgaatctaggcacacaagctggaacatcttgatccattctaaattgcatagcaactctatgtggaagatattgctcaataga 230  Q
    |||||  || | |||||||||||| |||||||  |   ||||||||||||||||||| |||||||||||||||||||||||| ||||| || || |||||    
T  26647694 caatgtctttagtctcattgaatcgaggcacatcactcggaacatcttgatccattccaaattgcatagcaactctatgtggcagatactgttctataga 26647595  T
Q  231 atcaaatccaactagctcggaaactctcaaggacataacaaatgagag 278  Q
     || |||||||| ||||| |||||||||||| | ||||||||||||||    
T  26647594 gtcgaatccaacaagctcagaaactctcaagcatataacaaatgagag 26647547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 30 - 280
Target Start/End: Complemental strand, 19832661 - 19832411
Alignment:
Q  30 cttccaccacgttgcataacgtgtggtaacaccggcatcaaaaaatctagatggaatgaataaacttgcattagataagggtctgcagtaatttttccaa 129  Q
    |||||||||| |||||||||||||||||||| | || ||||| ||||| | |||||   | ||  ||  || |||||  || |||||||| |||||||||    
T  19832661 cttccaccaccttgcataacgtgtggtaacatctgcctcaaataatcttggtggaaaatacaagtttttatcagatattggcctgcagtagtttttccaa 19832562  T
Q  130 gcaatggtttcattctcattgaatctaggcacacaagctggaacatcttgatccattctaaattgcatagcaactctatgtggaagatattgctcaatag 229  Q
    ||||||  || | |||||||||| |||| |||| || | |||||||||||||| |||| ||  |||||||||||||||||||||||||||||||| || |    
T  19832561 gcaatgtatttagtctcattgaacctagccacataaccaggaacatcttgatcaattccaatctgcatagcaactctatgtggaagatattgctctatgg 19832462  T
Q  230 aatcaaatccaactagctcggaaactctcaaggacataacaaatgagagaa 280  Q
    | ||||| ||||| ||||| |||||||||||  | ||||||||||||||||    
T  19832461 actcaaaaccaacaagctcagaaactctcaaacatataacaaatgagagaa 19832411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 33 - 261
Target Start/End: Complemental strand, 19854288 - 19854060
Alignment:
Q  33 ccaccacgttgcataacgtgtggtaacaccggcatcaaaaaatctagatggaatgaataaacttgcattagataagggtctgcagtaatttttccaagca 132  Q
    ||||||| || ||||||  ||||||||||| || | |||| | ||||||||||   ||||||||| || |||||||||||||  |||||||||||| |||    
T  19854288 ccaccacttttcataacaagtggtaacaccagctttaaaagacctagatggaaaatataaacttgtatcagataagggtctggtgtaatttttccatgca 19854189  T
Q  133 atggtttcattctcattgaatctaggcacacaagctggaacatcttgatccattctaaattgcatagcaactctatgtggaagatattgctcaatagaat 232  Q
    |||  || | ||||||||| ||| | |||| || | |||||||||||||| | || ||||||| |||||||||||||||| ||||||||||| ||| | |    
T  19854188 atgacttgagtctcattgagtctggacacataaccaggaacatcttgatcaaatccaaattgcctagcaactctatgtggtagatattgctctataaact 19854089  T
Q  233 caaatccaactagctcggaaactctcaag 261  Q
    |||| ||||||||||| ||||||||||||    
T  19854088 caaacccaactagctcagaaactctcaag 19854060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 102 - 275
Target Start/End: Complemental strand, 19951843 - 19951670
Alignment:
Q  102 agataagggtctgcagtaatttttccaagcaatggtttcattctcattgaatctaggcacacaagctggaacatcttgatccattctaaattgcatagca 201  Q
    ||||| ||| |||||||| ||||||||||||||   || | | | |||||| ||||||||| ||   ||||||||||||||||||  |||||||||||||    
T  19951843 agatatgggcctgcagtagtttttccaagcaatcactttagttttattgaacctaggcacataactcggaacatcttgatccattgcaaattgcatagca 19951744  T
Q  202 actctatgtggaagatattgctcaatagaatcaaatccaactagctcggaaactctcaaggacataacaaatga 275  Q
    ||||||||||||||||||||||| ||||| || |  ||||||||||| |||||||||||| | |||||||||||    
T  19951743 actctatgtggaagatattgctctatagagtcgataccaactagctcagaaactctcaagcatataacaaatga 19951670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 169 - 277
Target Start/End: Original strand, 20036069 - 20036177
Alignment:
Q  169 ggaacatcttgatccattctaaattgcatagcaactctatgtggaagatattgctcaatagaatcaaatccaactagctcggaaactctcaaggacataa 268  Q
    |||||||||||||| |||| |||||||||||||||||||||||||||||||||||| ||||| ||||||||||| ||||| ||||| |||||| | ||||    
T  20036069 ggaacatcttgatcaattccaaattgcatagcaactctatgtggaagatattgctctatagactcaaatccaaccagctcagaaaccctcaagcatataa 20036168  T
Q  269 caaatgaga 277  Q
    |||||||||    
T  20036169 caaatgaga 20036177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 147 - 296
Target Start/End: Complemental strand, 19812957 - 19812808
Alignment:
Q  147 attgaatctaggcacacaagctggaacatcttgatccattctaaattgcatagcaactctatgtggaagatattgctcaatagaatcaaatccaactagc 246  Q
    |||||| ||||||||| ||  ||||||||||||||| |||| |||||||||||||||||||||||||||||||||||| ||||| || |  |||||||||    
T  19812957 attgaacctaggcacataacttggaacatcttgatcaattccaaattgcatagcaactctatgtggaagatattgctctatagagtcgataccaactagc 19812858  T
Q  247 tcggaaactctcaaggacataacaaatgagagaacattgttatccaaatc 296  Q
    || |||  ||||||| | |||||||||||||| |  |||||||| |||||    
T  19812857 tcagaacatctcaagcatataacaaatgagagcattttgttatctaaatc 19812808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 169 - 278
Target Start/End: Complemental strand, 19944369 - 19944260
Alignment:
Q  169 ggaacatcttgatccattctaaattgcatagcaactctatgtggaagatattgctcaatagaatcaaatccaactagctcggaaactctcaaggacataa 268  Q
    |||||||||||||| | ||  ||||||||||||||||||| ||| |||||||| || ||||| |||||||||||||||||||||||||||||| | ||||    
T  19944369 ggaacatcttgatcaaatccgaattgcatagcaactctatatggtagatattgttctatagactcaaatccaactagctcggaaactctcaagaatataa 19944270  T
Q  269 caaatgagag 278  Q
    ||||||||||    
T  19944269 caaatgagag 19944260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 143 - 275
Target Start/End: Original strand, 20033774 - 20033906
Alignment:
Q  143 tctcattgaatctaggcacacaagctggaacatcttgatccattctaaattgcatagcaactctatgtggaagatattgctcaatagaatcaaatccaac 242  Q
    |||| ||||| ||||||||| ||  |||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||| || |  |||||    
T  20033774 tctcgttgaacctaggcacataacttggaacatcttgatccattccaaattgcatagcaactctatgtggaagatattgctctatagagtcgataccaac 20033873  T
Q  243 tagctcggaaactctcaaggacataacaaatga 275  Q
    | |||| || ||||||| | | |||||||||||    
T  20033874 ttgctcagacactctcatgcatataacaaatga 20033906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 169 - 302
Target Start/End: Complemental strand, 20046772 - 20046639
Alignment:
Q  169 ggaacatcttgatccattctaaattgcatagcaactctatgtggaagatattgctcaatagaatcaaatccaactagctcggaaactctcaaggacataa 268  Q
    ||||||||||| || | || ||||||||||| |||||||||||||||||| ||||| ||||| ||||||||||| ||||| |||||||||| | | |||     
T  20046772 ggaacatcttggtcaagtccaaattgcatagaaactctatgtggaagatactgctctatagactcaaatccaacaagctcagaaactctcaggcatatag 20046673  T
Q  269 caaatgagagaacattgttatccaaatccttctt 302  Q
     |||||| || |  || |||||||||||||||||    
T  20046672 aaaatgaaagtatttttttatccaaatccttctt 20046639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 108 - 260
Target Start/End: Complemental strand, 19849709 - 19849557
Alignment:
Q  108 gggtctgcagtaatttttccaagcaatggtttcattctcattgaatctaggcacacaagctggaacatcttgatccattctaaattgcatagcaactcta 207  Q
    ||||||||| || |||| ||||||||||  || | | ||||| || || |||||| ||  ||||||||||||||||||||  ||||||| ||  ||||||    
T  19849709 gggtctgcaatagttttgccaagcaatgtctttagtatcatttaacctcggcacataacttggaacatcttgatccattccgaattgcaaagagactcta 19849610  T
Q  208 tgtggaagatattgctcaatagaatcaaatccaactagctcggaaactctcaa 260  Q
    ||||| ||||||||||| ||||| ||||||||||  ||||| |||||||||||    
T  19849609 tgtgggagatattgctctatagactcaaatccaatgagctcagaaactctcaa 19849557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 29 - 259
Target Start/End: Complemental strand, 19990317 - 19990087
Alignment:
Q  29 tcttccaccacgttgcataacgtgtggtaacaccggcatcaaaaaatctagatggaatgaataaacttg--cattagataagggtctgcagtaatttttc 126  Q
    |||||||||||  ||||||||| ||||||||| | || ||||| || || |||||||  |||| || ||  ||| ||||| ||| |||  ||| |||| |    
T  19990317 tcttccaccactctgcataacgagtggtaacatctgcctcaaacaacctcgatggaa--aatacacatgttcatcagatatgggcctgttgtagttttcc 19990220  T
Q  127 caagcaatggtttcattctcattgaatctaggcacacaagctggaacatcttgatccattctaaattgcatagcaactctatgtggaagatattgctcaa 226  Q
    |||||||  | |||| |||||||||| ||||||||  ||  ||||| |||||||||||||| |||||||| ||||||||||||||| ||||||||  | |    
T  19990219 caagcaacagattcagtctcattgaacctaggcacgtaacttggaatatcttgatccattccaaattgcaaagcaactctatgtgggagatattgaacta 19990120  T
Q  227 tagaatcaaatccaactagctcggaaactctca 259  Q
     | | |||| |||||| ||||| ||||||||||    
T  19990119 caaagtcaattccaacaagctcagaaactctca 19990087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 32 - 136
Target Start/End: Complemental strand, 19948613 - 19948509
Alignment:
Q  32 tccaccacgttgcataacgtgtggtaacaccggcatcaaaaaatctagatggaatgaataaacttgcattagataagggtctgcagtaatttttccaagc 131  Q
    |||||||| |||||||||| | ||||| ||| || ||||||||| |||||||||   ||||||||  || ||||||||||||| ||||||||||||||||    
T  19948613 tccaccactttgcataacgcgcggtaataccagcctcaaaaaatttagatggaaaatataaacttctatcagataagggtctggagtaatttttccaagc 19948514  T
Q  132 aatgg 136  Q
    |||||    
T  19948513 aatgg 19948509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 86; Significance: 4e-41; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 121 - 278
Target Start/End: Complemental strand, 9815734 - 9815577
Alignment:
Q  121 tttttccaagcaatggtttcattctcattgaatctaggcacacaagctggaacatcttgatccattctaaattgcatagcaactctatgtggaagatatt 220  Q
    ||||||||||| |||  || | |||||||||||||||||||| ||| |||||||||||||||||||  |||||||||||||||||||||||| | ||| |    
T  9815734 tttttccaagccatgagtttagtctcattgaatctaggcacataagttggaacatcttgatccatttcaaattgcatagcaactctatgtggcaaatact 9815635  T
Q  221 gctcaatagaatcaaatccaactagctcggaaactctcaaggacataacaaatgagag 278  Q
    |||| ||||| || |||||||| |||||||||||||||||| | ||||||||||||||    
T  9815634 gctctatagagtcgaatccaacaagctcggaaactctcaagcatataacaaatgagag 9815577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 121 - 278
Target Start/End: Original strand, 26354345 - 26354502
Alignment:
Q  121 tttttccaagcaatggtttcattctcattgaatctaggcacacaagctggaacatcttgatccattctaaattgcatagcaactctatgtggaagatatt 220  Q
    |||||||||||||||  || | ||||||| |||||||||||| ||  |||||||||||||||||||| |||||||||||||||||||||||| | ||| |    
T  26354345 tttttccaagcaatgaatttagtctcattaaatctaggcacataacttggaacatcttgatccattccaaattgcatagcaactctatgtggcaaatact 26354444  T
Q  221 gctcaatagaatcaaatccaactagctcggaaactctcaaggacataacaaatgagag 278  Q
    |||| ||||| ||||||||||| ||||| |||||||||| | | ||||||||||||||    
T  26354445 gctctatagagtcaaatccaacaagctcagaaactctcaggcatataacaaatgagag 26354502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 18 - 100
Target Start/End: Complemental strand, 16794061 - 16793979
Alignment:
Q  18 acctgcacttctcttccaccacgttgcataacgtgtggtaacaccggcatcaaaaaatctagatggaatgaataaacttgcat 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||    
T  16794061 acctgcacttctcttccaccacgttgcataacgtgtggtaacaccggcataaaaaaatgtagatggaatgaataaacttgcat 16793979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 112 - 261
Target Start/End: Original strand, 38434998 - 38435147
Alignment:
Q  112 ctgcagtaatttttccaagcaatggtttcattctcattgaatctaggcacacaagctggaacatcttgatccattctaaattgcatagcaactctatgtg 211  Q
    |||| ||| |||||| ||||||| | || | ||||||| || ||| ||||| ||  ||||||||||||||| |||||||||| ||||||| |||||||||    
T  38434998 ctgcggtagtttttctaagcaattgatttagtctcatttaacctaagcacataacttggaacatcttgatcaattctaaattacatagcatctctatgtg 38435097  T
Q  212 gaagatattgctcaatagaatcaaatccaactagctcggaaactctcaag 261  Q
    | |||||||| |||||||| |||||||||| ||||| |||||||||||||    
T  38435098 gtagatattgttcaatagagtcaaatccaattagctaggaaactctcaag 38435147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 82; Significance: 1e-38; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 102 - 275
Target Start/End: Complemental strand, 1717939 - 1717766
Alignment:
Q  102 agataagggtctgcagtaatttttccaagcaatggtttcattctcattgaatctaggcacacaagctggaacatcttgatccattctaaattgcatagca 201  Q
    ||||| ||| |||||||| | |||||||||||||| || |  |||||||||||||||||||  |  |||||||||||||||||||| |||||||||||||    
T  1717939 agatatgggcctgcagtagtgtttccaagcaatggatttagcctcattgaatctaggcacatcacttggaacatcttgatccattccaaattgcatagca 1717840  T
Q  202 actctatgtggaagatattgctcaatagaatcaaatccaactagctcggaaactctcaaggacataacaaatga 275  Q
    ||||||||||| ||||| ||||| ||||| ||||||||||| || || || ||||||||| | |||||||||||    
T  1717839 actctatgtggcagatactgctctatagagtcaaatccaacaagttcagatactctcaagcatataacaaatga 1717766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 171 - 278
Target Start/End: Complemental strand, 38483621 - 38483516
Alignment:
Q  171 aacatcttgatccattctaaattgcatagcaactctatgtggaagatattgctcaatagaatcaaatccaactagctcggaaactctcaaggacataaca 270  Q
    |||||||| |||||| | |||||||||||||||||||||   ||  || ||||| ||||  ||||||| ||| |||||  ||||||||||| | ||||||    
T  38483621 aacatcttaatccataccaaattgcatagcaactctatgacaaa--tactgctctatagtctcaaatctaacaagctcaaaaactctcaagcatataaca 38483524  T
Q  271 aatgagag 278  Q
    ||||||||    
T  38483523 aatgagag 38483516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 171 - 260
Target Start/End: Complemental strand, 12581911 - 12581822
Alignment:
Q  171 aacatcttgatccattctaaattgcatagcaactctatgtggaagatattgctcaatagaatcaaatccaactagctcggaaactctcaa 260  Q
    |||||||||||| |||| ||||||||||  |||| ||||| ||||| || |||| ||| | ||||||||||  ||||  |||||||||||    
T  12581911 aacatcttgatcaattccaaattgcataaaaactgtatgtcgaagacatagctctatatactcaaatccaataagcttagaaactctcaa 12581822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 208 - 248
Target Start/End: Original strand, 6397284 - 6397324
Alignment:
Q  208 tgtggaagatattgctcaatagaatcaaatccaactagctc 248  Q
    ||||||||||||||||| ||||| ||||||||||| |||||    
T  6397284 tgtggaagatattgctctatagactcaaatccaacaagctc 6397324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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