View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2611_low_13 (Length: 284)
Name: NF2611_low_13
Description: NF2611
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2611_low_13 |
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| [»] scaffold0209 (4 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 205; Significance: 1e-112; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 13 - 266
Target Start/End: Complemental strand, 177894 - 177641
Alignment:
| Q |
13 |
aatatcatgtcaacaaattgttcatggctgatatcaggaaacttcttttggtaacaatggcgaatatttttctcttcttgttccaggaaagctttgtagt |
112 |
Q |
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| T |
177894 |
aatatcatgtcaacaaattgttcatggctgatatcaggaaacttcttttggtaacaatggcgaatatttttctcttcttgttctaggaaagctttgtagt |
177795 |
T |
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| Q |
113 |
taattaaatcannnnnnncttctatgcgattccnnnnnnnntgaaaatatctttgtttatgctcttgcatttcctcaagttttttgttgttatggtggat |
212 |
Q |
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| T |
177794 |
taattaaatcatttttttcttctatgcgattccaaaaaaaatgaaaatatctttgtttatgctcttgcatttcctcaagttttttgttgttatggtggat |
177695 |
T |
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| Q |
213 |
aggtccaattgatatgagcagaggtgtatatgcctcttctttcccattcaaaag |
266 |
Q |
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| T |
177694 |
aggtccaattgatatgagcagaggtgtatatgcctcttctttcccattcaaaag |
177641 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 15 - 266
Target Start/End: Complemental strand, 606582 - 606331
Alignment:
| Q |
15 |
tatcatgtcaacaaattgttcatggctgatatcaggaaacttcttttggtaacaatggcgaatatttttctcttcttgttccaggaaagctttgtagtta |
114 |
Q |
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|||||| ||||||||||||| ||||| |||||| ||| | || |||||||| ||||||||||| | ||||||||||| ||||||| ||||||||| |
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| T |
606582 |
tatcatatcaacaaattgtttctggctaatatcaacaaaaattttctggtaacagtggcgaatattatgttcttcttgttcaaggaaagttttgtagttc |
606483 |
T |
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| Q |
115 |
attaaatcannnnnnncttctatgcgattccnnnnnnnntgaaaatatctttgtttatgctcttgcatttcctcaagttttttgttgttatggtggatag |
214 |
Q |
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| T |
606482 |
attaaatcacttttttggtctaggcgattccaaaagaaatgaaaatatctctgtttgtgttcttgcatatcctcatgtgttttgttgctatggtggatag |
606383 |
T |
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| Q |
215 |
gtccaattgatatgagcagaggtgtatatgcctcttctttcccattcaaaag |
266 |
Q |
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| T |
606382 |
gtccaattgatatgagtagaggtgtataatcttcttccttcacattcaaaag |
606331 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 15 - 266
Target Start/End: Original strand, 115895 - 116146
Alignment:
| Q |
15 |
tatcatgtcaacaaattgttcatggctgatatcaggaaacttcttttggtaacaatggcgaatatttttctcttcttgttccaggaaagctttgtagtta |
114 |
Q |
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| T |
115895 |
tatcatgtcaaccaattgctcactgttgatatctgtgaatttcttttggtaacatcggcgtattttttgctcttcttgttgaaggaaaactttgtagttc |
115994 |
T |
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| Q |
115 |
attaaatcannnnnnncttctatgcgattccnnnnnnnntgaaaatatctttgtttatgctcttgcatttcctcaagttttttgttgttatggtggatag |
214 |
Q |
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| T |
115995 |
atgaaatcacttttcttgtctaggcgattccaaaaataatggaaatatctatgtttgtactcttgcatttcctcaagtctttcgttgttatggtggatag |
116094 |
T |
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| Q |
215 |
gtccaattgatatgagcagaggtgtatatgcctcttctttcccattcaaaag |
266 |
Q |
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| T |
116095 |
gtccaatagatatgattagaggtgtataagcctcctctttcacattcaaaag |
116146 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0209 (Bit Score: 49; Significance: 4e-19; HSPs: 4)
Name: scaffold0209
Description:
Target: scaffold0209; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 154 - 245
Target Start/End: Original strand, 10426 - 10520
Alignment:
| Q |
154 |
tgaaaatatctttgtttatgctcttgcatttcctcaagttttttgt---tgttatggtggataggtccaattgatatgagcagaggtgtatatgc |
245 |
Q |
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| T |
10426 |
tgaaaatacctatgtttgtattcttgcatttcctcaagttttttgttgttgttatggtggataggaccaatggatatcagcagaggtgtatatgc |
10520 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0209; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 154 - 245
Target Start/End: Original strand, 23880 - 23974
Alignment:
| Q |
154 |
tgaaaatatctttgtttatgctcttgcatttcctcaagttttttgt---tgttatggtggataggtccaattgatatgagcagaggtgtatatgc |
245 |
Q |
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| T |
23880 |
tgaaaatacctatgtttgtattcttgcatttcctcaagttttttgttgttgttatggtggataggaccaatggatatcagcagaggtgtatatgc |
23974 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0209; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 15 - 123
Target Start/End: Original strand, 10287 - 10395
Alignment:
| Q |
15 |
tatcatgtcaacaaattgttcatggctgatatcaggaaacttcttttggtaacaatggcgaatatttttctcttcttgttccaggaaagctttgtagtta |
114 |
Q |
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| T |
10287 |
tatcatatcaaccatttgttcattgctgatatcatagaacttcttttggtaacatcggcgtatattctgatcttcttgttgaagaaattctttgtagttc |
10386 |
T |
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| Q |
115 |
attaaatca |
123 |
Q |
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| T |
10387 |
atcaaatca |
10395 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0209; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 15 - 123
Target Start/End: Original strand, 23741 - 23849
Alignment:
| Q |
15 |
tatcatgtcaacaaattgttcatggctgatatcaggaaacttcttttggtaacaatggcgaatatttttctcttcttgttccaggaaagctttgtagtta |
114 |
Q |
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| T |
23741 |
tatcatatcaaccatttgttcattgctgatatcatagaacttcttttggtaacatcggcgtatattctgatcttcttgttgaagaaattctttgtagttc |
23840 |
T |
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| Q |
115 |
attaaatca |
123 |
Q |
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| T |
23841 |
atcaaatca |
23849 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 44; Significance: 4e-16; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 175 - 266
Target Start/End: Original strand, 37438676 - 37438767
Alignment:
| Q |
175 |
tcttgcatttcctcaagttttttgttgttatggtggataggtccaattgatatgagcagaggtgtatatgcctcttctttcccattcaaaag |
266 |
Q |
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||||| |||||||||||||||||||||||||||||||| | | ||||||||| || ||| ||||||| ||||||||||| | |||||||| |
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| T |
37438676 |
tcttgtatttcctcaagttttttgttgttatggtggattgatacaattgatacaagtagaagtgtataatcctcttctttcaccttcaaaag |
37438767 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 55 - 123
Target Start/End: Original strand, 37438567 - 37438635
Alignment:
| Q |
55 |
ttcttttggtaacaatggcgaatatttttctcttcttgttccaggaaagctttgtagttaattaaatca |
123 |
Q |
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| T |
37438567 |
ttcttttggtaacatcggcgtatattttgctcttcttgttcaacgaaggttttgcagttcattaaatca |
37438635 |
T |
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